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Follicular lymphoma at diagnosis, treated in first line with immunochemotherapy

We performed targeted NGS in Follicular lymphoma samples at diagnosis. Explored clinico-genetic correlations and assessed four clinical or clinicogenetic risk models (FLIPI, FLIPI-2, PRIMA-IP or m7-FLIPI-molecular score) in patients with symptomatic FL who received frontline immunochemotherapy. Out of 191 patients with FL grade 1-3a, 109 were successfully genotyped. Treatment consisted on rituximab (R) plus CVP/CHOP (72.5%) or R-bendamustine (R-B) (27.5%).

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Data Access Policy for the data of the article: Prognostic scores for follicular lymphoma

DATA ACCESS AGREEMENT (DAA) These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project must be included in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Please ensure that a full postal address and a valid Institutional email address are included Name: Institution’s Legal Name: Institutional Postal Address: Institutional E-mail Address: Website of the Institution: 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in ANNEX II OF THE APPENDIX IV to protect these Data. The User Institution agrees that in handling this Data, the User Institution will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and of the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution shall only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to acknowledge the contribution of the Data Producers in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. The User Institution agrees to follow the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 11. The User Institution will notify FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES within 30 days of any changes or departures of Authorised Personnel. 12. The User Institution will notify FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES prior to any significant changes to the protocol for the Project. 13. The User Institution will notify FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES as soon as it becomes aware of a breach of the terms or conditions of this agreement. 14. FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 15. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 16. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 17. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 18. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Spain and shall be subject to the exclusive jurisdiction of the Spanish courts. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS Dataset reference The dataset EGAS00001006674 consists of 109 fastq files containing the results of targeted sequencing of Follicular lymphoma samples at diagnosis. We prepared the NGS libraries using the QIAseq Targeted DNA Custom Panel REF: CDHS-10683Z-2597. Name of project that created the dataset Follicular lymphoma at diagnosis, treated in first line with immunochemotherapy Names of other data producers/collaborators Joan Gibert Fernandez (jgibert@imim.es) Maria Concepcion Fernandez Rodriguez (mconcepcionfernandezrodriguez@psmar.cat) Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor or the User Institution) Details of dataset requested i.e., Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* APPENDIX III – PUBLICATION POLICY FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 12 months after these data were first made available on the relevant hosting database, unless FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (and its accession numbers) and acknowledge its use in a form agreed by the User Institution with FUNDACIÓ INSTITUT HOSPITAL DEL MAR D’INVESTIGACIONS MÈDIQUES.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007294396 1665705637937 176.3 MB
EGAF00007294397 1665705637937 194.7 MB
EGAF00007294398 1665705637937 200.9 MB
EGAF00007294399 1665705637937 219.7 MB
EGAF00007294400 1665705637937 216.5 MB
EGAF00007294401 1665705637937 236.0 MB
EGAF00007294402 1665705637937 494.8 MB
EGAF00007294403 1665705637937 531.5 MB
EGAF00007294404 1665706571774 705.5 MB
EGAF00007294405 1665707422916 763.4 MB
EGAF00007294406 1665705637937 558.5 MB
EGAF00007294407 1665705637937 603.9 MB
EGAF00007294408 1665706571774 237.1 MB
EGAF00007294409 1665705637937 260.7 MB
EGAF00007294410 1665705637937 662.9 MB
EGAF00007294411 1665706571774 720.1 MB
EGAF00007294412 1665705637937 318.2 MB
EGAF00007294413 1665705637937 351.3 MB
EGAF00007294414 1665705637937 197.5 MB
EGAF00007294415 1665705637937 234.4 MB
EGAF00007294416 1665707422916 857.8 MB
EGAF00007294417 1665707422916 933.0 MB
EGAF00007294418 1665706571774 363.1 MB
EGAF00007294419 1665705637937 402.2 MB
EGAF00007294420 1665705637937 505.6 MB
EGAF00007294421 1665705637937 552.7 MB
EGAF00007294422 1665705637937 772.4 MB
EGAF00007294423 1665707422916 836.7 MB
EGAF00007294424 1665705637937 172.6 MB
EGAF00007294425 1665705637937 192.4 MB
EGAF00007294426 1665706571774 749.7 MB
EGAF00007294427 1665705637937 834.2 MB
EGAF00007294428 1665706571774 256.2 MB
EGAF00007294429 1665705637937 279.7 MB
EGAF00007294430 1665705637937 305.1 MB
EGAF00007294431 1665706571774 333.4 MB
EGAF00007294432 1665705637937 981.7 MB
EGAF00007294433 1665707422916 1.1 GB
EGAF00007294434 1665705637937 204.1 MB
EGAF00007294435 1665705637937 224.3 MB
EGAF00007294436 1665705637937 355.8 MB
EGAF00007294437 1665705637937 389.4 MB
EGAF00007294438 1665706571774 518.1 MB
EGAF00007294439 1665706571774 565.6 MB
EGAF00007294440 1665706571774 264.3 MB
EGAF00007294441 1665705637937 289.5 MB
EGAF00007294442 1665705637937 461.4 MB
EGAF00007294443 1665705637937 501.8 MB
EGAF00007294444 1665705637937 93.9 MB
EGAF00007294445 1665705637937 103.2 MB
EGAF00007294446 1665705637937 350.7 MB
EGAF00007294447 1665705637937 388.6 MB
EGAF00007294448 1665705637937 261.2 MB
EGAF00007294449 1665705637937 286.8 MB
EGAF00007294450 1665707422916 1.7 GB
EGAF00007294451 1665707422916 1.9 GB
EGAF00007294452 1665705637937 203.1 MB
EGAF00007294453 1665705637937 226.3 MB
EGAF00007294454 1665705637937 423.2 MB
EGAF00007294455 1665705637937 469.6 MB
EGAF00007294456 1665708321485 1.3 GB
EGAF00007294457 1665708321485 1.4 GB
EGAF00007294458 1665705637937 226.2 MB
EGAF00007294459 1665705637937 249.0 MB
EGAF00007294460 1665705637937 96.8 MB
EGAF00007294461 1665705637937 108.1 MB
EGAF00007294462 1665705637937 457.6 MB
EGAF00007294463 1665705637937 512.6 MB
EGAF00007294464 1665705637937 247.0 MB
EGAF00007294465 1665705637937 273.2 MB
EGAF00007294466 1665707422916 840.9 MB
EGAF00007294467 1665708321485 928.8 MB
EGAF00007294468 1665705637937 101.4 MB
EGAF00007294469 1665705637937 116.1 MB
EGAF00007294470 1665705637937 272.2 MB
EGAF00007294471 1665705637937 298.7 MB
EGAF00007294472 1665705637937 292.0 MB
EGAF00007294473 1665705637937 317.3 MB
EGAF00007294474 1665705637937 149.8 MB
EGAF00007294475 1665705637937 160.0 MB
EGAF00007294476 1665705637937 526.4 MB
EGAF00007294477 1665705637937 583.1 MB
EGAF00007294478 1665705637937 196.8 MB
EGAF00007294479 1665705637937 215.9 MB
EGAF00007294480 1665705637937 216.1 MB
EGAF00007294481 1665705637937 239.4 MB
EGAF00007294482 1665705637937 402.3 MB
EGAF00007294483 1665705637937 445.1 MB
EGAF00007294484 1665705637937 445.6 MB
EGAF00007294485 1665705637937 488.9 MB
EGAF00007294486 1665705637937 194.6 MB
EGAF00007294487 1665705637937 213.4 MB
EGAF00007294488 1665705637937 333.8 MB
EGAF00007294489 1665705637937 368.0 MB
EGAF00007294490 1665705637937 255.8 MB
EGAF00007294491 1665705637937 285.2 MB
EGAF00007294492 1665708321485 5.3 GB
EGAF00007294493 1665707422916 5.8 GB
EGAF00007294494 1665705637937 690.8 MB
EGAF00007294495 1665705637937 727.3 MB
EGAF00007294496 1665705637937 843.5 MB
EGAF00007294497 1665705637937 961.6 MB
EGAF00007294498 1665706571774 550.3 MB
EGAF00007294499 1665705637937 601.6 MB
EGAF00007294500 1665705637937 898.3 MB
EGAF00007294501 1665705637937 988.3 MB
EGAF00007294502 1665705637937 1.0 GB
EGAF00007294503 1665707422916 1.1 GB
EGAF00007294504 1665705637937 959.6 MB
EGAF00007294505 1665705637937 1.1 GB
EGAF00007294506 1665706571774 862.5 MB
EGAF00007294507 1665706571774 965.8 MB
EGAF00007294508 1665705637937 1.0 GB
EGAF00007294509 1665707422916 1.1 GB
EGAF00007294510 1665705637937 873.1 MB
EGAF00007294511 1665705637937 945.5 MB
EGAF00007294512 1665705637937 785.9 MB
EGAF00007294513 1665708321485 881.8 MB
EGAF00007294514 1665705637937 643.7 MB
EGAF00007294515 1665706571774 715.7 MB
EGAF00007294516 1665705637937 880.0 MB
EGAF00007294517 1665706571774 999.4 MB
EGAF00007294518 1665705637937 678.2 MB
EGAF00007294519 1665705637937 744.4 MB
EGAF00007294520 1665705637937 657.5 MB
EGAF00007294521 1665705637937 759.1 MB
EGAF00007294522 1665705637937 869.0 MB
EGAF00007294523 1665707422916 953.0 MB
EGAF00007294524 1665706571774 775.5 MB
EGAF00007294525 1665705637937 854.6 MB
EGAF00007294526 1665705637937 669.2 MB
EGAF00007294527 1665705637937 734.9 MB
EGAF00007294528 1665705637937 947.2 MB
EGAF00007294529 1665707422916 1.0 GB
EGAF00007294530 1665706571774 846.2 MB
EGAF00007294531 1665706571774 975.5 MB
EGAF00007294532 1665706571774 967.8 MB
EGAF00007294533 1665707422916 1.1 GB
EGAF00007294534 1665705637937 689.2 MB
EGAF00007294535 1665705637937 760.4 MB
EGAF00007294536 1665705637937 507.4 MB
EGAF00007294537 1665706571774 555.8 MB
EGAF00007294538 1665705637937 965.7 MB
EGAF00007294539 1665706571774 1.0 GB
EGAF00007294540 1665706571774 2.0 GB
EGAF00007294541 1665706571774 2.2 GB
EGAF00007294542 1665708321485 878.9 MB
EGAF00007294543 1665705637937 989.0 MB
EGAF00007294544 1665707422916 1.1 GB
EGAF00007294545 1665707422916 1.2 GB
EGAF00007294546 1665705637937 925.3 MB
EGAF00007294547 1665705637937 1.0 GB
EGAF00007294548 1665705637937 820.2 MB
EGAF00007294549 1665705637937 922.2 MB
EGAF00007294550 1665705637937 251.9 MB
EGAF00007294551 1665705637937 278.2 MB
EGAF00007294552 1665705637937 250.9 MB
EGAF00007294553 1665705637937 273.8 MB
EGAF00007294554 1665705637937 140.1 MB
EGAF00007294555 1665705637937 158.6 MB
EGAF00007294556 1665705637937 786.6 MB
EGAF00007294557 1665705637937 881.5 MB
EGAF00007294558 1665705637937 272.7 MB
EGAF00007294559 1665705637937 314.0 MB
EGAF00007294560 1665705637937 175.5 MB
EGAF00007294561 1665705637937 192.6 MB
EGAF00007294562 1665705637937 304.1 MB
EGAF00007294563 1665705637937 350.0 MB
EGAF00007294564 1665705637937 763.2 MB
EGAF00007294565 1665705637937 876.8 MB
EGAF00007294566 1665706571774 640.8 MB
EGAF00007294567 1665705637937 742.5 MB
EGAF00007294568 1665705637937 205.8 MB
EGAF00007294569 1665705637937 232.5 MB
EGAF00007294570 1665705637937 240.8 MB
EGAF00007294571 1665705637937 284.2 MB
EGAF00007294572 1665705637937 21.3 MB
EGAF00007294573 1665705637937 23.9 MB
EGAF00007294574 1665705637937 534.7 MB
EGAF00007294575 1665706571774 569.6 MB
EGAF00007294576 1665705637937 691.6 MB
EGAF00007294577 1665705637937 798.1 MB
EGAF00007294578 1665706571774 738.7 MB
EGAF00007294579 1665705637937 817.9 MB
EGAF00007294580 1665705637937 580.6 MB
EGAF00007294581 1665705637937 650.2 MB
EGAF00007294582 1665705637937 553.3 MB
EGAF00007294583 1665706571774 632.4 MB
EGAF00007294584 1665705637937 507.7 MB
EGAF00007294585 1665705637937 586.3 MB
EGAF00007294586 1665705637937 510.5 MB
EGAF00007294587 1665705637937 587.4 MB
EGAF00007294588 1665705637937 419.8 MB
EGAF00007294589 1665705637937 480.7 MB
EGAF00007294590 1665705637937 281.9 MB
EGAF00007294591 1665705637937 296.2 MB
EGAF00007294592 1665705637937 537.8 MB
EGAF00007294593 1665705637937 607.9 MB
EGAF00007294594 1665705637937 365.9 MB
EGAF00007294595 1665705637937 414.2 MB
EGAF00007294596 1665705637937 485.6 MB
EGAF00007294597 1665706571774 533.7 MB
EGAF00007294598 1665705637937 476.1 MB
EGAF00007294599 1665705637937 527.0 MB
EGAF00007294600 1665705637937 425.7 MB
EGAF00007294601 1665705637937 478.9 MB
EGAF00007294602 1665705637937 353.8 MB
EGAF00007294603 1665705637937 397.7 MB
EGAF00007294604 1665705637937 448.9 MB
EGAF00007294605 1665705637937 502.4 MB
EGAF00007294606 1665707422916 2.6 GB
EGAF00007294607 1665705637937 2.9 GB
EGAF00007294608 1665705637937 111.0 MB
EGAF00007294609 1665705637937 125.3 MB
EGAF00007294610 1665705637937 380.4 MB
EGAF00007294611 1665705637937 435.6 MB
EGAF00007294612 1665705637937 749.7 MB
EGAF00007294613 1665706571774 816.5 MB
218 Files (138.1 GB)