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WGS of tumor and blood control samples of neuroblastoma

high coverage whole genome sequencing of 38 samples was done on a patterned flowcell v.2.5 (150 bp paired end, HiSeq X Ten) with coverage of about 60x for the tumor and whole blood control samples. All tumors had a tumor cell content of ≥60%. Sequencing libraries were prepared using the Truseq DNA Nano kit (Illumina) according to the manufacturers’ instructions and size selected using SPRI beads (Beckman Coulter Genomics).

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007249811 1664519421281 39.8 GB
EGAF00007249812 1664550022534 48.6 GB
EGAF00007249813 1664561721055 38.7 GB
EGAF00007249814 1664537421233 45.8 GB
EGAF00007249815 1664536521745 38.6 GB
EGAF00007249816 1664525721183 42.0 GB
EGAF00007249817 1664519421281 37.5 GB
EGAF00007249818 1664540121346 42.4 GB
EGAF00007249819 1664511321644 38.6 GB
EGAF00007249820 1664558121203 44.2 GB
EGAF00007249821 1664543721343 38.2 GB
EGAF00007249822 1664558121203 44.6 GB
EGAF00007249823 1664557221418 38.9 GB
EGAF00007249824 1664554521310 41.7 GB
EGAF00007249825 1664554521310 46.4 GB
EGAF00007249826 1664551821194 45.1 GB
EGAF00007249827 1664527521484 36.6 GB
EGAF00007249828 1664559021130 40.6 GB
EGAF00007249829 1664544621561 36.4 GB
EGAF00007249830 1664551821194 39.7 GB
EGAF00007249831 1664554521310 39.0 GB
EGAF00007249832 1664557221418 42.0 GB
EGAF00007249833 1664555421102 39.3 GB
EGAF00007249834 1664559921113 42.6 GB
EGAF00007249835 1664498721665 38.2 GB
EGAF00007249836 1664508621214 41.9 GB
EGAF00007249837 1664531121125 36.8 GB
EGAF00007249838 1664511321644 40.7 GB
EGAF00007249839 1664497821591 40.9 GB
EGAF00007249840 1664532021374 43.7 GB
EGAF00007249841 1664552721406 39.5 GB
EGAF00007249842 1664547321456 43.4 GB
EGAF00007249843 1664505922339 39.6 GB
EGAF00007249844 1664544621561 42.1 GB
EGAF00007249845 1664541021230 39.2 GB
EGAF00007249846 1664550022534 42.0 GB
EGAF00007249847 1664537421233 41.0 GB
EGAF00007249848 1664535623212 43.6 GB
EGAF00007249849 1664521221311 39.3 GB
EGAF00007249850 1664552721406 43.6 GB
EGAF00007249851 1664523021241 38.6 GB
EGAF00007249852 1664535623212 43.5 GB
EGAF00007249853 1664552721406 39.1 GB
EGAF00007249854 1664563521027 42.1 GB
EGAF00007249855 1664547321456 40.0 GB
EGAF00007249856 1664559921113 42.9 GB
EGAF00007249857 1664513121122 41.4 GB
EGAF00007249858 1664552721406 45.8 GB
EGAF00007249859 1664543721343 41.3 GB
EGAF00007249860 1664511321644 44.2 GB
EGAF00007249861 1664519421281 37.0 GB
EGAF00007249862 1664518522154 40.9 GB
EGAF00007249863 1664510421299 37.3 GB
EGAF00007249864 1664523021241 41.5 GB
EGAF00007249865 1664534721855 38.8 GB
EGAF00007249866 1664534721855 40.7 GB
EGAF00007249867 1664550022534 38.7 GB
EGAF00007249868 1664546421088 40.1 GB
EGAF00007249869 1664535623212 39.6 GB
EGAF00007249870 1664517621243 42.4 GB
EGAF00007249871 1664537421233 40.6 GB
EGAF00007249872 1664547321456 43.5 GB
EGAF00007249873 1664523021241 41.1 GB
EGAF00007249874 1664549121318 43.9 GB
EGAF00007249875 1664511321644 41.2 GB
EGAF00007249876 1664548221198 44.3 GB
EGAF00007249877 1664546421088 39.7 GB
EGAF00007249878 1664540121346 46.6 GB
EGAF00007249879 1664519421281 37.0 GB
EGAF00007249880 1664539221330 40.1 GB
EGAF00007249881 1664540121346 39.7 GB
EGAF00007249882 1664532921122 44.4 GB
EGAF00007249883 1664547321456 39.4 GB
EGAF00007249884 1664520321117 42.7 GB
EGAF00007256293 1664946021209 41.1 GB
EGAF00007256294 1664942421299 43.6 GB
EGAF00007256295 1664946921168 39.4 GB
EGAF00007256296 1664964021147 46.4 GB
EGAF00007256297 1664946021209 37.5 GB
EGAF00007256298 1664952321106 41.5 GB
EGAF00007256299 1664937921223 40.4 GB
EGAF00007256300 1664959521146 42.2 GB
EGAF00007256301 1664947821049 41.1 GB
EGAF00007256302 1664946921168 43.5 GB
EGAF00007256303 1664943322687 41.0 GB
EGAF00007256304 1664937021165 43.5 GB
EGAF00007256305 1664944221121 41.6 GB
EGAF00007256306 1664944221121 43.9 GB
EGAF00007256307 1664950521543 41.6 GB
EGAF00007256308 1664952321106 44.0 GB
EGAF00007256309 1664955021319 41.0 GB
EGAF00007256310 1664940621231 45.6 GB
EGAF00007256311 1664953221185 41.4 GB
EGAF00007256312 1664946021209 45.3 GB
EGAF00007256313 1664946021209 42.4 GB
EGAF00007256314 1664940621231 42.8 GB
EGAF00007256315 1664942421299 42.2 GB
EGAF00007256316 1664955921135 42.9 GB
EGAF00007256317 1664953221185 37.9 GB
EGAF00007256318 1664933421437 41.4 GB
EGAF00007256319 1664934324465 38.2 GB
EGAF00007256320 1664952321106 42.0 GB
EGAF00007256321 1664938821410 38.7 GB
EGAF00007256322 1664964921184 43.2 GB
EGAF00007256323 1664950521543 38.6 GB
EGAF00007256324 1664939721229 43.5 GB
EGAF00007256325 1664949621181 41.2 GB
EGAF00007256326 1664967857225 44.5 GB
EGAF00007256327 1664945121176 39.2 GB
EGAF00007256328 1664955921135 42.6 GB
EGAF00007256329 1664945121176 40.7 GB
EGAF00007256330 1664945121176 42.7 GB
EGAF00007256331 1664952321106 37.5 GB
EGAF00007256332 1664962221070 41.3 GB
EGAF00007256333 1664938821410 37.2 GB
EGAF00007256334 1664962221070 41.3 GB
EGAF00007256335 1664963121224 35.8 GB
EGAF00007256336 1664939721229 40.3 GB
EGAF00007256337 1664958621215 35.8 GB
EGAF00007256338 1664964021147 39.9 GB
EGAF00007256339 1664962221070 40.5 GB
EGAF00007256340 1664941521164 42.6 GB
EGAF00007256341 1664939721229 40.7 GB
EGAF00007256342 1664950521543 42.3 GB
EGAF00007256343 1664946921168 39.0 GB
EGAF00007256344 1664939721229 41.3 GB
EGAF00007256345 1664944221121 39.0 GB
EGAF00007256346 1664946921168 41.3 GB
EGAF00007256347 1664957721272 40.8 GB
EGAF00007256348 1664970321198 44.7 GB
EGAF00007256349 1664936127363 35.5 GB
EGAF00007256350 1664943322687 39.3 GB
EGAF00007256351 1664937021165 35.8 GB
EGAF00007256352 1664965821080 39.6 GB
EGAF00007256353 1664960421163 40.5 GB
EGAF00007256354 1664970321198 44.5 GB
EGAF00007256355 1664963121223 40.7 GB
EGAF00007256356 1664941521164 44.4 GB
EGAF00007256357 1664954121375 37.5 GB
EGAF00007256358 1664944221121 41.5 GB
EGAF00007256359 1664960421163 37.6 GB
EGAF00007256360 1664937021165 41.9 GB
EGAF00007256361 1664960421163 40.1 GB
EGAF00007256362 1664964921184 41.6 GB
EGAF00007256363 1664953221185 40.5 GB
EGAF00007256364 1664939721229 41.8 GB
EGAF00007256365 1664945121176 39.2 GB
EGAF00007256366 1664966721067 40.9 GB
EGAF00007266543 1665405021397 41.3 GB
EGAF00007266544 1665405921163 42.2 GB
EGAF00007266545 1665405021397 40.7 GB
EGAF00007266546 1665408621012 45.5 GB
152 Files (6.2 TB)