Need Help?

Transcriptomic Profile of Colorectal Cancer Samples

Samples encompass primary colorectal tumors or metastasis of 75 patients, collected by Medical Pathologists from surgically removed specimens. Tissues were embedded in optimal cutting temperature (OCT) medium, snapshot frozen in liquid nitrogen within 40 minutes of collection and preserved at -80ºC. Samples were collected between June 2010 and October 2017 as part of a prospective biobanking project.

Request Access

Translational Oncology Instituto de Medicina Molecular DAC

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Instituto de Medicina Molecular João Lobo Antunes grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Instituto de Medicina Molecular João Lobo Antunes and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Instituto de Medicina Molecular João Lobo Antunes: iMM is a private non-profit research institute that nurtures innovative ideas in basic, clinical and translational biomedical research. Its mission is to improve human health through the study of disease mechanisms and the development of novel diagnostic tests and therapeutic approaches. iMM research expertise spans across broad research areas of Molecular and Cellular Biology; Development, Ageing and Cancer; Infection and Immunity; Neurosciences and Behavior. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees that it will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 8. The User Institution must ensure compliance with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (https://eur-lex.europa.eu/legal-content/EN/TXT/PDF/?uri=CELEX:32016R0679&from=EN). IN case of thirds countries, or other respective regulation with the 9. The User Institution agrees to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. You agree not to attempt to identify Data Subjects. 10. The User Institution agrees to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 8. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 9. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 10. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 11. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf). 12. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the Instituto de Medicina Molecular within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the Instituto de Medicina Molecular prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the Instituto de Medicina Molecular as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Instituto de Medicina Molecular may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the Instituto de Medicina Molecular. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Portugal and shall be subject to the exclusive jurisdiction of the Portuguese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005276 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007253091 fastq.gz 6.0 GB
EGAF00007253092 fastq.gz 6.1 GB
EGAF00007253093 fastq.gz 6.6 GB
EGAF00007253094 fastq.gz 6.8 GB
EGAF00007253095 fastq.gz 7.1 GB
EGAF00007253096 fastq.gz 7.2 GB
EGAF00007253097 fastq.gz 8.5 GB
EGAF00007253098 fastq.gz 8.9 GB
EGAF00007253099 fastq.gz 7.3 GB
EGAF00007253100 fastq.gz 7.5 GB
EGAF00007253101 fastq.gz 6.7 GB
EGAF00007253102 fastq.gz 6.8 GB
EGAF00007253103 fastq.gz 7.1 GB
EGAF00007253104 fastq.gz 7.2 GB
EGAF00007253105 fastq.gz 6.9 GB
EGAF00007253106 fastq.gz 7.2 GB
EGAF00007253107 fastq.gz 7.5 GB
EGAF00007253108 fastq.gz 7.7 GB
EGAF00007253109 fastq.gz 8.1 GB
EGAF00007253110 fastq.gz 8.3 GB
EGAF00007253111 fastq.gz 8.1 GB
EGAF00007253112 fastq.gz 8.3 GB
EGAF00007253113 fastq.gz 8.2 GB
EGAF00007253114 fastq.gz 8.5 GB
EGAF00007253115 fastq.gz 5.9 GB
EGAF00007253116 fastq.gz 6.1 GB
EGAF00007253117 fastq.gz 7.9 GB
EGAF00007253118 fastq.gz 8.0 GB
EGAF00007253119 fastq.gz 5.3 GB
EGAF00007253120 fastq.gz 5.3 GB
EGAF00007253121 fastq.gz 7.9 GB
EGAF00007253122 fastq.gz 8.0 GB
EGAF00007253123 fastq.gz 6.7 GB
EGAF00007253124 fastq.gz 6.8 GB
EGAF00007253125 fastq.gz 7.1 GB
EGAF00007253126 fastq.gz 7.4 GB
EGAF00007253127 fastq.gz 7.0 GB
EGAF00007253128 fastq.gz 7.1 GB
EGAF00007253129 fastq.gz 7.4 GB
EGAF00007253130 fastq.gz 7.6 GB
EGAF00007253131 fastq.gz 7.3 GB
EGAF00007253132 fastq.gz 7.6 GB
EGAF00007253133 fastq.gz 7.9 GB
EGAF00007253134 fastq.gz 8.2 GB
EGAF00007253135 fastq.gz 7.0 GB
EGAF00007253136 fastq.gz 7.2 GB
EGAF00007253137 fastq.gz 7.7 GB
EGAF00007253138 fastq.gz 8.0 GB
EGAF00007253139 fastq.gz 7.3 GB
EGAF00007253140 fastq.gz 7.5 GB
EGAF00007253141 fastq.gz 7.3 GB
EGAF00007253142 fastq.gz 7.5 GB
EGAF00007253143 fastq.gz 7.4 GB
EGAF00007253144 fastq.gz 7.7 GB
EGAF00007253145 fastq.gz 8.1 GB
EGAF00007253146 fastq.gz 8.3 GB
EGAF00007253147 fastq.gz 7.9 GB
EGAF00007253148 fastq.gz 8.2 GB
EGAF00007253149 fastq.gz 8.1 GB
EGAF00007253150 fastq.gz 8.3 GB
EGAF00007253151 fastq.gz 8.0 GB
EGAF00007253152 fastq.gz 8.2 GB
EGAF00007253153 fastq.gz 7.3 GB
EGAF00007253154 fastq.gz 7.5 GB
EGAF00007253155 fastq.gz 6.4 GB
EGAF00007253156 fastq.gz 6.5 GB
EGAF00007253157 fastq.gz 7.8 GB
EGAF00007253158 fastq.gz 8.0 GB
EGAF00007253159 fastq.gz 6.6 GB
EGAF00007253160 fastq.gz 6.7 GB
EGAF00007253161 fastq.gz 6.1 GB
EGAF00007253162 fastq.gz 6.1 GB
EGAF00007253163 fastq.gz 6.0 GB
EGAF00007253164 fastq.gz 6.3 GB
EGAF00007253165 fastq.gz 7.4 GB
EGAF00007253166 fastq.gz 7.7 GB
EGAF00007253167 fastq.gz 5.8 GB
EGAF00007253168 fastq.gz 5.9 GB
EGAF00007253169 fastq.gz 7.1 GB
EGAF00007253170 fastq.gz 7.4 GB
EGAF00007253171 fastq.gz 3.5 GB
EGAF00007253172 fastq.gz 3.6 GB
EGAF00007253173 fastq.gz 6.8 GB
EGAF00007253174 fastq.gz 6.9 GB
EGAF00007253175 fastq.gz 8.0 GB
EGAF00007253176 fastq.gz 8.3 GB
EGAF00007253177 fastq.gz 7.1 GB
EGAF00007253178 fastq.gz 7.4 GB
EGAF00007253179 fastq.gz 7.6 GB
EGAF00007253180 fastq.gz 7.8 GB
EGAF00007253181 fastq.gz 7.2 GB
EGAF00007253182 fastq.gz 7.4 GB
EGAF00007253183 fastq.gz 6.0 GB
EGAF00007253184 fastq.gz 6.1 GB
EGAF00007253185 fastq.gz 7.2 GB
EGAF00007253186 fastq.gz 7.4 GB
EGAF00007253187 fastq.gz 8.6 GB
EGAF00007253188 fastq.gz 8.8 GB
EGAF00007253189 fastq.gz 4.9 GB
EGAF00007253190 fastq.gz 5.1 GB
EGAF00007253191 fastq.gz 17.2 GB
EGAF00007253192 fastq.gz 18.1 GB
EGAF00007253193 fastq.gz 8.2 GB
EGAF00007253194 fastq.gz 8.4 GB
EGAF00007253195 fastq.gz 7.4 GB
EGAF00007253196 fastq.gz 7.5 GB
EGAF00007253197 fastq.gz 4.4 GB
EGAF00007253198 fastq.gz 4.6 GB
EGAF00007253199 fastq.gz 7.8 GB
EGAF00007253200 fastq.gz 7.9 GB
EGAF00007253201 fastq.gz 7.2 GB
EGAF00007253202 fastq.gz 7.6 GB
EGAF00007253203 fastq.gz 7.5 GB
EGAF00007253204 fastq.gz 7.7 GB
EGAF00007253205 fastq.gz 8.0 GB
EGAF00007253206 fastq.gz 8.1 GB
EGAF00007253207 fastq.gz 7.1 GB
EGAF00007253208 fastq.gz 7.3 GB
EGAF00007253209 fastq.gz 5.4 GB
EGAF00007253210 fastq.gz 5.5 GB
EGAF00007253211 fastq.gz 4.5 GB
EGAF00007253212 fastq.gz 4.7 GB
EGAF00007253213 fastq.gz 6.5 GB
EGAF00007253214 fastq.gz 6.7 GB
EGAF00007253215 fastq.gz 7.8 GB
EGAF00007253216 fastq.gz 8.0 GB
EGAF00007253217 fastq.gz 4.9 GB
EGAF00007253218 fastq.gz 5.1 GB
EGAF00007253219 fastq.gz 7.0 GB
EGAF00007253220 fastq.gz 7.4 GB
EGAF00007253221 fastq.gz 8.2 GB
EGAF00007253222 fastq.gz 8.4 GB
EGAF00007253223 fastq.gz 7.2 GB
EGAF00007253224 fastq.gz 7.4 GB
EGAF00007253225 fastq.gz 7.6 GB
EGAF00007253226 fastq.gz 7.7 GB
EGAF00007253227 fastq.gz 10.1 GB
EGAF00007253228 fastq.gz 10.4 GB
EGAF00007253229 fastq.gz 8.0 GB
EGAF00007253230 fastq.gz 8.2 GB
EGAF00007253231 fastq.gz 18.6 GB
EGAF00007253232 fastq.gz 19.4 GB
EGAF00007253233 fastq.gz 8.2 GB
EGAF00007253234 fastq.gz 8.5 GB
EGAF00007253235 fastq.gz 6.2 GB
EGAF00007253236 fastq.gz 6.4 GB
EGAF00007253237 fastq.gz 7.8 GB
EGAF00007253238 fastq.gz 8.1 GB
EGAF00007253239 fastq.gz 7.8 GB
EGAF00007253240 fastq.gz 8.1 GB
150 Files (1.1 TB)