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Transcriptomic Profile of Colorectal Cancer Samples

Samples encompass primary colorectal tumors or metastasis of 75 patients, collected by Medical Pathologists from surgically removed specimens. Tissues were embedded in optimal cutting temperature (OCT) medium, snapshot frozen in liquid nitrogen within 40 minutes of collection and preserved at -80ºC. Samples were collected between June 2010 and October 2017 as part of a prospective biobanking project.

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Translational Oncology Instituto de Medicina Molecular DAC

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Instituto de Medicina Molecular João Lobo Antunes grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Instituto de Medicina Molecular João Lobo Antunes and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Instituto de Medicina Molecular João Lobo Antunes: iMM is a private non-profit research institute that nurtures innovative ideas in basic, clinical and translational biomedical research. Its mission is to improve human health through the study of disease mechanisms and the development of novel diagnostic tests and therapeutic approaches. iMM research expertise spans across broad research areas of Molecular and Cellular Biology; Development, Ageing and Cancer; Infection and Immunity; Neurosciences and Behavior. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees that it will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 8. The User Institution must ensure compliance with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (https://eur-lex.europa.eu/legal-content/EN/TXT/PDF/?uri=CELEX:32016R0679&from=EN). IN case of thirds countries, or other respective regulation with the 9. The User Institution agrees to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. You agree not to attempt to identify Data Subjects. 10. The User Institution agrees to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 8. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 9. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 10. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 11. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf). 12. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the Instituto de Medicina Molecular within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the Instituto de Medicina Molecular prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the Instituto de Medicina Molecular as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Instituto de Medicina Molecular may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the Instituto de Medicina Molecular. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Portugal and shall be subject to the exclusive jurisdiction of the Portuguese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007253091 1664757922103 6.0 GB
EGAF00007253092 1664759721283 6.1 GB
EGAF00007253093 1664760621788 6.6 GB
EGAF00007253094 1664755221614 6.8 GB
EGAF00007253095 1664757021737 7.1 GB
EGAF00007253096 1664758821708 7.2 GB
EGAF00007253097 1664759721283 8.5 GB
EGAF00007253098 1664765121218 8.9 GB
EGAF00007253099 1664763321078 7.3 GB
EGAF00007253100 1664760621788 7.5 GB
EGAF00007253101 1664759721283 6.7 GB
EGAF00007253102 1664760621788 6.8 GB
EGAF00007253103 1664756121517 7.1 GB
EGAF00007253104 1664758821708 7.2 GB
EGAF00007253105 1664757922103 6.9 GB
EGAF00007253106 1664757922103 7.2 GB
EGAF00007253107 1664759721283 7.5 GB
EGAF00007253108 1664758821708 7.7 GB
EGAF00007253109 1664757021737 8.1 GB
EGAF00007253110 1664757021737 8.3 GB
EGAF00007253111 1664757021737 8.1 GB
EGAF00007253112 1664760621788 8.3 GB
EGAF00007253113 1664757922103 8.2 GB
EGAF00007253114 1664760621788 8.5 GB
EGAF00007253115 1664758821708 5.9 GB
EGAF00007253116 1664757922103 6.1 GB
EGAF00007253117 1664758821708 7.9 GB
EGAF00007253118 1664759721283 8.0 GB
EGAF00007253119 1664759721283 5.3 GB
EGAF00007253120 1664756121517 5.3 GB
EGAF00007253121 1664756121517 7.9 GB
EGAF00007253122 1664757021737 8.0 GB
EGAF00007253123 1664755221614 6.7 GB
EGAF00007253124 1664757021737 6.8 GB
EGAF00007253125 1664760621788 7.1 GB
EGAF00007253126 1664755221614 7.4 GB
EGAF00007253127 1664754321530 7.0 GB
EGAF00007253128 1664758821708 7.1 GB
EGAF00007253129 1664758821708 7.4 GB
EGAF00007253130 1664757021737 7.6 GB
EGAF00007253131 1664757922103 7.3 GB
EGAF00007253132 1664764221078 7.6 GB
EGAF00007253133 1664756121517 7.9 GB
EGAF00007253134 1664758821708 8.2 GB
EGAF00007253135 1664758821708 7.0 GB
EGAF00007253136 1664757021737 7.2 GB
EGAF00007253137 1664757922103 7.7 GB
EGAF00007253138 1664758821708 8.0 GB
EGAF00007253139 1664757922103 7.3 GB
EGAF00007253140 1664757021737 7.5 GB
EGAF00007253141 1664757021737 7.3 GB
EGAF00007253142 1664754321530 7.5 GB
EGAF00007253143 1664760621788 7.4 GB
EGAF00007253144 1664755221614 7.7 GB
EGAF00007253145 1664757922103 8.1 GB
EGAF00007253146 1664757922103 8.3 GB
EGAF00007253147 1664757922103 7.9 GB
EGAF00007253148 1664754321530 8.2 GB
EGAF00007253149 1664757021737 8.1 GB
EGAF00007253150 1664757021737 8.3 GB
EGAF00007253151 1664756121517 8.0 GB
EGAF00007253152 1664757021737 8.2 GB
EGAF00007253153 1664756121517 7.3 GB
EGAF00007253154 1664755221614 7.5 GB
EGAF00007253155 1664756121517 6.4 GB
EGAF00007253156 1664753421284 6.5 GB
EGAF00007253157 1664758821708 7.8 GB
EGAF00007253158 1664762421330 8.0 GB
EGAF00007253159 1664757922103 6.6 GB
EGAF00007253160 1664757922103 6.7 GB
EGAF00007253161 1664756121517 6.1 GB
EGAF00007253162 1664756121517 6.1 GB
EGAF00007253163 1664757021737 6.0 GB
EGAF00007253164 1664759721283 6.3 GB
EGAF00007253165 1664756121517 7.4 GB
EGAF00007253166 1664757922103 7.7 GB
EGAF00007253167 1664755221614 5.8 GB
EGAF00007253168 1664757021737 5.9 GB
EGAF00007253169 1664757922103 7.1 GB
EGAF00007253170 1664757021737 7.4 GB
EGAF00007253171 1664754321530 3.5 GB
EGAF00007253172 1664753421284 3.6 GB
EGAF00007253173 1664758821708 6.8 GB
EGAF00007253174 1664758821708 6.9 GB
EGAF00007253175 1664759721283 8.0 GB
EGAF00007253176 1664759721283 8.3 GB
EGAF00007253177 1664759721283 7.1 GB
EGAF00007253178 1664754321530 7.4 GB
EGAF00007253179 1664757922103 7.6 GB
EGAF00007253180 1664755221614 7.8 GB
EGAF00007253181 1664757922103 7.2 GB
EGAF00007253182 1664753421284 7.4 GB
EGAF00007253183 1664754321530 6.0 GB
EGAF00007253184 1664755221614 6.1 GB
EGAF00007253185 1664755221614 7.2 GB
EGAF00007253186 1664754321530 7.4 GB
EGAF00007253187 1664756121517 8.6 GB
EGAF00007253188 1664757922103 8.8 GB
EGAF00007253189 1664755221614 4.9 GB
EGAF00007253190 1664756121517 5.1 GB
EGAF00007253191 1664765121218 17.2 GB
EGAF00007253192 1664761521199 18.1 GB
EGAF00007253193 1664759721283 8.2 GB
EGAF00007253194 1664757922103 8.4 GB
EGAF00007253195 1664757922103 7.4 GB
EGAF00007253196 1664756121517 7.5 GB
EGAF00007253197 1664757021737 4.4 GB
EGAF00007253198 1664757922103 4.6 GB
EGAF00007253199 1664756121517 7.8 GB
EGAF00007253200 1664758821708 7.9 GB
EGAF00007253201 1664755221614 7.2 GB
EGAF00007253202 1664757021737 7.6 GB
EGAF00007253203 1664758821708 7.5 GB
EGAF00007253204 1664756121517 7.7 GB
EGAF00007253205 1664757922103 8.0 GB
EGAF00007253206 1664757922103 8.1 GB
EGAF00007253207 1664757021737 7.1 GB
EGAF00007253208 1664758821708 7.3 GB
EGAF00007253209 1664756121517 5.4 GB
EGAF00007253210 1664757922103 5.5 GB
EGAF00007253211 1664755221614 4.5 GB
EGAF00007253212 1664757021737 4.7 GB
EGAF00007253213 1664755221614 6.5 GB
EGAF00007253214 1664756121517 6.7 GB
EGAF00007253215 1664757021737 7.8 GB
EGAF00007253216 1664756121517 8.0 GB
EGAF00007253217 1664757021737 4.9 GB
EGAF00007253218 1664758821708 5.1 GB
EGAF00007253219 1664755221614 7.0 GB
EGAF00007253220 1664757922104 7.4 GB
EGAF00007253221 1664757021737 8.2 GB
EGAF00007253222 1664761521199 8.4 GB
EGAF00007253223 1664754321530 7.2 GB
EGAF00007253224 1664755221614 7.4 GB
EGAF00007253225 1664754321530 7.6 GB
EGAF00007253226 1664757021737 7.7 GB
EGAF00007253227 1664755221614 10.1 GB
EGAF00007253228 1664759721283 10.4 GB
EGAF00007253229 1664755221614 8.0 GB
EGAF00007253230 1664754321530 8.2 GB
EGAF00007253231 1664758821708 18.6 GB
EGAF00007253232 1664761521199 19.4 GB
EGAF00007253233 1664755221614 8.2 GB
EGAF00007253234 1664754321530 8.5 GB
EGAF00007253235 1664760621788 6.2 GB
EGAF00007253236 1664757922104 6.4 GB
EGAF00007253237 1664757922103 7.8 GB
EGAF00007253238 1664755221614 8.1 GB
EGAF00007253239 1664758821708 7.8 GB
EGAF00007253240 1664756121517 8.1 GB
150 Files (1.1 TB)