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Oesophageal adenocarcinoma scRNAseq from LUD2015-005 study (NCT02735239, EudraCT 2015-005298-19)

This dataset contains single-cell RNA-seq generated from the LUD2015-005 study (NCT02735239, EudraCT 2015-005298-19) and additional donors with Barrett's oesophagus using the 5' Single Cell Gene Expression assay from 10x Genomics. Samples were generated from oesophageal tumours, Barrett's oesophagus, and normal oesophagus and gastric tissues, with the aim of generating a reference atlas for cell types found in normal and disease-associated tissue states in the upper GI tract. This reference atlas was used as the basis for a deconvolution workflow to estimate the cell composition of bulk transcriptomes from these tissues, and to assess cell type-specific expression patterns of potential predictive biomarkers for immunochemotherapy regimens in this setting.

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OAC Immuno Trial LUD2015-005 Data Access Agreement

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007075690 1663032628439 489.2 MB
EGAF00007075691 1663033524553 1.3 GB
EGAF00007075692 1663032628440 491.6 MB
EGAF00007075693 1663033524553 1.3 GB
EGAF00007075694 1663033524553 499.4 MB
EGAF00007075695 1663037123490 1.3 GB
EGAF00007075696 1663032628440 499.0 MB
EGAF00007075697 1663034423616 1.3 GB
EGAF00007075698 1663035322523 516.4 MB
EGAF00007075699 1663034423616 1.4 GB
EGAF00007075700 1663032628440 517.6 MB
EGAF00007075701 1663034423616 1.4 GB
EGAF00007075702 1663032628440 527.3 MB
EGAF00007075703 1663033524553 1.4 GB
EGAF00007075704 1663033524553 525.5 MB
EGAF00007075705 1663034423616 1.4 GB
EGAF00007075706 1663032628440 119.5 MB
EGAF00007075707 1663032628440 345.7 MB
EGAF00007075708 1663032628440 119.9 MB
EGAF00007075709 1663033524553 347.6 MB
EGAF00007075710 1663032628440 121.8 MB
EGAF00007075711 1663032628440 353.5 MB
EGAF00007075712 1663032628440 121.8 MB
EGAF00007075713 1663033524553 353.0 MB
EGAF00007075714 1663032628440 460.9 MB
EGAF00007075715 1663033524553 1.2 GB
EGAF00007075716 1663032628440 463.1 MB
EGAF00007075717 1663034423616 1.2 GB
EGAF00007075718 1663033524553 470.5 MB
EGAF00007075719 1663033524553 1.3 GB
EGAF00007075720 1663032628440 470.3 MB
EGAF00007075721 1663033524553 1.3 GB
EGAF00007075722 1663032628440 410.4 MB
EGAF00007075723 1663033524553 1.1 GB
EGAF00007075724 1663032628440 409.3 MB
EGAF00007075725 1663033524553 1.1 GB
EGAF00007075726 1663032628440 411.3 MB
EGAF00007075727 1663033524553 1.1 GB
EGAF00007075728 1663032628440 419.1 MB
EGAF00007075729 1663034423616 1.2 GB
EGAF00007075730 1663032628440 445.6 MB
EGAF00007075731 1663034423616 1.2 GB
EGAF00007075732 1663032628440 441.1 MB
EGAF00007075733 1663034423616 1.2 GB
EGAF00007075734 1663032628440 448.2 MB
EGAF00007075735 1663033524553 1.2 GB
EGAF00007075736 1663032628440 451.2 MB
EGAF00007075737 1663033524553 1.2 GB
EGAF00007075738 1663032628440 278.3 MB
EGAF00007075739 1663032628440 740.9 MB
EGAF00007075740 1663032628439 277.1 MB
EGAF00007075741 1663032628439 734.6 MB
EGAF00007075742 1663032628439 278.9 MB
EGAF00007075743 1663034423616 741.0 MB
EGAF00007075744 1663032628439 283.7 MB
EGAF00007075745 1663032628440 751.2 MB
EGAF00007075746 1663032628440 375.5 MB
EGAF00007075747 1663033524553 991.2 MB
EGAF00007075748 1663032628439 371.3 MB
EGAF00007075749 1663034423616 974.8 MB
EGAF00007075750 1663032628439 377.3 MB
EGAF00007075751 1663033524553 991.4 MB
EGAF00007075752 1663032628440 379.6 MB
EGAF00007075753 1663033524553 994.8 MB
EGAF00007075754 1663032628440 190.3 MB
EGAF00007075755 1663032628440 558.3 MB
EGAF00007075756 1663032628440 191.4 MB
EGAF00007075757 1663032628440 561.7 MB
EGAF00007075758 1663033524553 194.5 MB
EGAF00007075759 1663034423616 571.3 MB
EGAF00007075760 1663032628440 194.3 MB
EGAF00007075761 1663032628440 569.5 MB
EGAF00007075762 1663032628440 560.0 MB
EGAF00007075763 1663034423616 1.4 GB
EGAF00007075764 1663032628440 562.5 MB
EGAF00007075765 1663034423616 1.4 GB
EGAF00007075766 1663033524553 572.6 MB
EGAF00007075767 1663033524553 1.5 GB
EGAF00007075768 1663032628440 571.3 MB
EGAF00007075769 1663033524553 1.5 GB
EGAF00007075770 1663032628440 182.1 MB
EGAF00007075771 1663032628440 437.6 MB
EGAF00007075772 1663032628439 182.1 MB
EGAF00007075773 1663032628440 436.5 MB
EGAF00007075774 1663032628440 185.6 MB
EGAF00007075775 1663032628440 445.1 MB
EGAF00007075776 1663032628440 184.6 MB
EGAF00007075777 1663032628440 442.5 MB
EGAF00007075778 1663032628440 189.1 MB
EGAF00007075779 1663032628440 475.1 MB
EGAF00007075780 1663032628439 191.5 MB
EGAF00007075781 1663032628439 480.2 MB
EGAF00007075782 1663032628439 195.5 MB
EGAF00007075783 1663032628439 490.1 MB
EGAF00007075784 1663032628439 194.7 MB
EGAF00007075785 1663032628439 487.7 MB
EGAF00007075786 1663032628439 304.0 MB
EGAF00007075787 1663033524553 795.7 MB
EGAF00007075788 1663032628439 301.7 MB
EGAF00007075789 1663032628439 785.7 MB
EGAF00007075790 1663032628439 303.7 MB
EGAF00007075791 1663032628439 792.0 MB
EGAF00007075792 1663033524553 309.1 MB
EGAF00007075793 1663032628439 803.8 MB
EGAF00007075794 1663032628439 459.6 MB
EGAF00007075795 1663034423616 1.2 GB
EGAF00007075796 1663033524553 457.3 MB
EGAF00007075797 1663033524553 1.2 GB
EGAF00007075798 1663034423616 454.5 MB
EGAF00007075799 1663034423616 1.2 GB
EGAF00007075800 1663032628440 466.6 MB
EGAF00007075801 1663035322523 1.2 GB
EGAF00007075802 1663032628440 76.2 MB
EGAF00007075803 1663032628439 202.8 MB
EGAF00007075804 1663032628440 75.9 MB
EGAF00007075805 1663032628440 200.8 MB
EGAF00007075806 1663032628439 76.3 MB
EGAF00007075807 1663032628439 202.4 MB
EGAF00007075808 1663032628439 77.8 MB
EGAF00007075809 1663032628439 205.5 MB
EGAF00007075810 1663032628439 234.3 MB
EGAF00007075811 1663032628439 629.3 MB
EGAF00007075812 1663032628439 231.9 MB
EGAF00007075813 1663032628439 617.9 MB
EGAF00007075814 1663032628439 233.6 MB
EGAF00007075815 1663032628439 624.1 MB
EGAF00007075816 1663032628439 237.4 MB
EGAF00007075817 1663032628439 631.4 MB
EGAF00007075818 1663032628440 119.5 MB
EGAF00007075819 1663033524553 313.6 MB
EGAF00007075820 1663032628440 118.9 MB
EGAF00007075821 1663032628439 310.0 MB
EGAF00007075822 1663032628439 118.1 MB
EGAF00007075823 1663032628439 308.2 MB
EGAF00007075824 1663032628439 121.3 MB
EGAF00007075825 1663032628439 315.6 MB
EGAF00007075826 1663032628440 243.8 MB
EGAF00007075827 1663032628440 617.0 MB
EGAF00007075828 1663032628440 242.1 MB
EGAF00007075829 1663032628440 609.2 MB
EGAF00007075830 1663032628439 243.8 MB
EGAF00007075831 1663032628439 614.5 MB
EGAF00007075832 1663032628440 247.7 MB
EGAF00007075833 1663032628440 622.6 MB
EGAF00007075834 1663032628440 40.2 MB
EGAF00007075835 1663032628440 94.3 MB
EGAF00007075836 1663032628440 39.7 MB
EGAF00007075837 1663032628439 93.0 MB
EGAF00007075838 1663032628439 40.1 MB
EGAF00007075839 1663032628440 93.9 MB
EGAF00007075840 1663032628440 40.8 MB
EGAF00007075841 1663031726237 95.5 MB
EGAF00007075842 1663032628439 129.9 MB
EGAF00007075843 1663032628440 302.1 MB
EGAF00007075844 1663031726237 129.0 MB
EGAF00007075845 1663032628440 299.3 MB
EGAF00007075846 1663031726237 128.2 MB
EGAF00007075847 1663032628440 297.5 MB
EGAF00007075848 1663032628440 131.6 MB
EGAF00007075849 1663032628440 305.5 MB
EGAF00007075850 1663032628440 276.0 MB
EGAF00007075851 1663032628439 725.9 MB
EGAF00007075852 1663032628439 274.0 MB
EGAF00007075853 1663032628440 715.5 MB
EGAF00007075854 1663032628440 275.8 MB
EGAF00007075855 1663032628440 721.1 MB
EGAF00007075856 1663032628440 280.5 MB
EGAF00007075857 1663032628440 731.2 MB
EGAF00007075858 1663031726237 114.0 MB
EGAF00007075859 1663032628440 293.5 MB
EGAF00007075860 1663032628440 113.6 MB
EGAF00007075861 1663031726237 290.5 MB
EGAF00007075862 1663031726237 112.9 MB
EGAF00007075863 1663032628440 288.8 MB
EGAF00007075864 1663031726237 115.9 MB
EGAF00007075865 1663032628440 295.7 MB
EGAF00007075866 1663032628440 455.3 MB
EGAF00007075867 1663035322523 1.2 GB
EGAF00007075868 1663032628440 461.6 MB
EGAF00007075869 1663033524553 1.2 GB
EGAF00007075870 1663032628440 463.2 MB
EGAF00007075871 1663033524553 1.2 GB
EGAF00007075872 1663032628440 469.3 MB
EGAF00007075873 1663033524553 1.3 GB
EGAF00007075874 1663031726237 289.1 MB
EGAF00007075875 1663032628440 775.9 MB
EGAF00007075876 1663032628440 294.6 MB
EGAF00007075877 1663032628440 787.9 MB
EGAF00007075878 1663032628440 295.7 MB
EGAF00007075879 1663032628440 791.2 MB
EGAF00007075880 1663031726237 295.2 MB
EGAF00007075881 1663032628440 788.2 MB
EGAF00007075882 1663032628440 302.9 MB
EGAF00007075883 1663032628440 780.5 MB
EGAF00007075884 1663031726237 308.5 MB
EGAF00007075885 1663032628440 790.7 MB
EGAF00007075886 1663032628440 309.5 MB
EGAF00007075887 1663032628440 793.3 MB
EGAF00007075888 1663031726237 309.9 MB
EGAF00007075889 1663032628439 791.8 MB
EGAF00007075890 1663033524553 583.6 MB
EGAF00007075891 1663033524553 1.5 GB
EGAF00007075892 1663032628439 592.8 MB
EGAF00007075893 1663034423616 1.5 GB
EGAF00007075894 1663032628440 594.7 MB
EGAF00007075895 1663033524553 1.5 GB
EGAF00007075896 1663034423616 604.2 MB
EGAF00007075897 1663034423616 1.5 GB
EGAF00007075898 1663031726237 265.4 MB
EGAF00007075899 1663032628440 673.2 MB
EGAF00007075900 1663032628440 269.5 MB
EGAF00007075901 1663032628440 676.6 MB
EGAF00007075902 1663032628440 270.7 MB
EGAF00007075903 1663032628440 680.6 MB
EGAF00007075904 1663031726237 271.6 MB
EGAF00007075905 1663032628440 680.6 MB
EGAF00007075906 1663031726237 105.6 MB
EGAF00007075907 1663031726237 278.0 MB
EGAF00007075908 1663031726237 105.1 MB
EGAF00007075909 1663031726237 275.2 MB
EGAF00007075910 1663031726237 105.7 MB
EGAF00007075911 1663031726237 277.5 MB
EGAF00007075912 1663031726237 107.6 MB
EGAF00007075913 1663031726237 281.6 MB
EGAF00007075914 1663034423616 483.3 MB
EGAF00007075915 1663033524553 1.3 GB
EGAF00007075916 1663032628440 489.8 MB
EGAF00007075917 1663033524553 1.3 GB
EGAF00007075918 1663032628440 491.9 MB
EGAF00007075919 1663033524553 1.3 GB
EGAF00007075920 1663033524553 499.4 MB
EGAF00007075921 1663033524553 1.3 GB
EGAF00007075922 1663032628439 313.5 MB
EGAF00007075923 1663035322523 814.9 MB
EGAF00007075924 1663031726237 313.2 MB
EGAF00007075925 1663032628439 813.7 MB
EGAF00007075926 1663032628440 319.3 MB
EGAF00007075927 1663032628440 829.5 MB
EGAF00007075928 1663032628440 317.4 MB
EGAF00007075929 1663032628439 823.2 MB
EGAF00007075930 1663032628439 343.3 MB
EGAF00007075931 1663033524553 953.9 MB
EGAF00007075932 1663031726237 342.7 MB
EGAF00007075933 1663033524553 945.6 MB
EGAF00007075934 1663031726237 343.8 MB
EGAF00007075935 1663033524553 950.5 MB
EGAF00007075936 1663031726237 351.0 MB
EGAF00007075937 1663034423616 966.5 MB
EGAF00007075938 1663031726237 149.7 MB
EGAF00007075939 1663031726237 406.7 MB
EGAF00007075940 1663031726237 149.5 MB
EGAF00007075941 1663031726237 402.5 MB
EGAF00007075942 1663031726237 148.4 MB
EGAF00007075943 1663032628439 399.1 MB
EGAF00007075944 1663031726237 152.5 MB
EGAF00007075945 1663032628439 409.0 MB
EGAF00007075946 1663031726237 345.8 MB
EGAF00007075947 1663032628440 932.4 MB
EGAF00007075948 1663032628439 344.7 MB
EGAF00007075949 1663032628439 919.9 MB
EGAF00007075950 1663031726237 341.2 MB
EGAF00007075951 1663033524553 910.3 MB
EGAF00007075952 1663032628440 347.3 MB
EGAF00007075953 1663032628440 923.6 MB
EGAF00007075954 1663031726237 184.1 MB
EGAF00007075955 1663032628440 517.5 MB
EGAF00007075956 1663031726237 180.3 MB
EGAF00007075957 1663031726237 504.8 MB
EGAF00007075958 1663031726237 183.4 MB
EGAF00007075959 1663032628440 512.3 MB
EGAF00007075960 1663032628440 183.5 MB
EGAF00007075961 1663031726237 510.7 MB
EGAF00007075962 1663031726237 226.3 MB
EGAF00007075963 1663032628440 587.5 MB
EGAF00007075964 1663031726237 222.6 MB
EGAF00007075965 1663032628440 576.1 MB
EGAF00007075966 1663031726237 232.4 MB
EGAF00007075967 1663032628439 600.7 MB
EGAF00007075968 1663031726237 224.5 MB
EGAF00007075969 1663032628439 580.5 MB
EGAF00007075970 1663031726237 456.7 MB
EGAF00007075971 1663034423616 1.1 GB
EGAF00007075972 1663032628440 463.8 MB
EGAF00007075973 1663034423616 1.1 GB
EGAF00007075974 1663031726237 464.8 MB
EGAF00007075975 1663034423616 1.2 GB
EGAF00007075976 1663031726237 472.0 MB
EGAF00007075977 1663033524553 1.2 GB
EGAF00007075978 1663032628440 385.5 MB
EGAF00007075979 1663033524553 977.8 MB
EGAF00007075980 1663031726237 391.4 MB
EGAF00007075981 1663032628440 983.0 MB
EGAF00007075982 1663031726237 392.7 MB
EGAF00007075983 1663033524553 987.5 MB
EGAF00007075984 1663032628439 398.8 MB
EGAF00007075985 1663033524553 999.8 MB
EGAF00007075986 1663032628439 200.6 MB
EGAF00007075987 1663031726237 578.5 MB
EGAF00007075988 1663031726237 196.5 MB
EGAF00007075989 1663031726237 564.5 MB
EGAF00007075990 1663031726237 199.6 MB
EGAF00007075991 1663032628439 571.9 MB
EGAF00007075992 1663031726237 199.7 MB
EGAF00007075993 1663031726237 570.4 MB
EGAF00007075994 1663031726237 15.7 MB
EGAF00007075995 1663031726237 41.2 MB
EGAF00007075996 1663031726237 15.4 MB
EGAF00007075997 1663031726237 40.3 MB
EGAF00007075998 1663031726237 16.0 MB
EGAF00007075999 1663031726237 41.8 MB
EGAF00007076000 1663031726237 15.5 MB
EGAF00007076001 1663031726237 40.5 MB
EGAF00007076002 1663031726237 198.5 MB
EGAF00007076003 1663032628439 533.5 MB
EGAF00007076004 1663031726237 194.5 MB
EGAF00007076005 1663034423616 521.5 MB
EGAF00007076006 1663031726237 197.4 MB
EGAF00007076007 1663031726237 527.6 MB
EGAF00007076008 1663031726237 197.7 MB
EGAF00007076009 1663031726237 527.1 MB
EGAF00007076010 1663031726237 895.4 MB
EGAF00007076011 1663031726237 2.3 GB
EGAF00007076012 1663032628440 880.0 MB
EGAF00007076013 1663034423616 2.2 GB
EGAF00007076014 1663033524553 919.4 MB
EGAF00007076015 1663035322523 2.3 GB
EGAF00007076016 1663033524553 886.4 MB
EGAF00007076017 1663033524553 2.2 GB
EGAF00007076018 1663031726237 41.2 MB
EGAF00007076019 1663031726237 107.5 MB
EGAF00007076020 1663031726237 40.9 MB
EGAF00007076021 1663031726237 106.5 MB
EGAF00007076022 1663031726237 41.2 MB
EGAF00007076023 1663032628440 107.5 MB
EGAF00007076024 1663031726237 42.0 MB
EGAF00007076025 1663032628440 109.1 MB
EGAF00007076026 1663031726237 200.9 MB
EGAF00007076027 1663031726237 531.0 MB
EGAF00007076028 1663031726237 199.1 MB
EGAF00007076029 1663031726237 522.2 MB
EGAF00007076030 1663031726237 200.5 MB
EGAF00007076031 1663031726237 527.4 MB
EGAF00007076032 1663031726237 203.8 MB
EGAF00007076033 1663032628440 534.1 MB
EGAF00007076034 1663031726237 107.4 MB
EGAF00007076035 1663031726237 277.6 MB
EGAF00007076036 1663031726237 106.8 MB
EGAF00007076037 1663032628440 274.5 MB
EGAF00007076038 1663031726237 106.3 MB
EGAF00007076039 1663031726237 273.5 MB
EGAF00007076040 1663031726237 109.0 MB
EGAF00007076041 1663031726237 279.8 MB
EGAF00007076042 1663031726237 43.0 MB
EGAF00007076043 1663031726237 106.4 MB
EGAF00007076044 1663031726237 42.9 MB
EGAF00007076045 1663031726237 105.9 MB
EGAF00007076046 1663031726237 43.1 MB
EGAF00007076047 1663031726237 106.6 MB
EGAF00007076048 1663031726237 44.1 MB
EGAF00007076049 1663031726237 108.7 MB
EGAF00007076050 1663031726237 120.3 MB
EGAF00007076051 1663031726237 299.8 MB
EGAF00007076052 1663031726237 119.2 MB
EGAF00007076053 1663031726237 296.3 MB
EGAF00007076054 1663031726237 120.0 MB
EGAF00007076055 1663031726237 298.8 MB
EGAF00007076056 1663031726237 122.2 MB
EGAF00007076057 1663031726237 303.4 MB
EGAF00007076058 1663031726237 59.5 MB
EGAF00007076059 1663030825288 145.5 MB
EGAF00007076060 1663030825288 59.1 MB
EGAF00007076061 1663031726237 144.2 MB
EGAF00007076062 1663030825288 58.7 MB
EGAF00007076063 1663030825288 143.2 MB
EGAF00007076064 1663031726237 60.5 MB
EGAF00007076065 1663031726237 147.3 MB
EGAF00007076066 1663030825288 200.7 MB
EGAF00007076067 1663031726237 537.5 MB
EGAF00007076068 1663031726237 196.0 MB
EGAF00007076069 1663031726237 523.9 MB
EGAF00007076070 1663031726237 198.9 MB
EGAF00007076071 1663031726237 530.2 MB
EGAF00007076072 1663030825287 199.2 MB
EGAF00007076073 1663030825288 529.7 MB
EGAF00007076074 1663030825288 395.5 MB
EGAF00007076075 1663031726237 982.4 MB
EGAF00007076076 1663031726237 387.2 MB
EGAF00007076077 1663033524553 960.4 MB
EGAF00007076078 1663031726237 404.3 MB
EGAF00007076079 1663031726237 1.0 GB
EGAF00007076080 1663031726237 390.5 MB
EGAF00007076081 1663033524553 967.9 MB
EGAF00007076082 1663031726237 364.4 MB
EGAF00007076083 1663033524553 885.0 MB
EGAF00007076084 1663031726237 358.5 MB
EGAF00007076085 1663031726237 868.7 MB
EGAF00007076086 1663031726237 364.8 MB
EGAF00007076087 1663030825288 883.4 MB
EGAF00007076088 1663032628440 366.6 MB
EGAF00007076089 1663031726237 886.3 MB
EGAF00007076090 1663031726237 164.3 MB
EGAF00007076091 1663032628440 429.4 MB
EGAF00007076092 1663031726237 163.8 MB
EGAF00007076093 1663031726237 426.2 MB
EGAF00007076094 1663030825288 165.4 MB
EGAF00007076095 1663030825288 429.8 MB
EGAF00007076096 1663030825288 165.3 MB
EGAF00007076097 1663031726237 428.8 MB
EGAF00007076098 1663030825288 170.0 MB
EGAF00007076099 1663031726237 449.6 MB
EGAF00007076100 1663030825288 167.6 MB
EGAF00007076101 1663030825288 440.9 MB
EGAF00007076102 1663031726237 172.2 MB
EGAF00007076103 1663030825288 453.0 MB
EGAF00007076104 1663030825287 169.4 MB
EGAF00007076105 1663031726237 444.5 MB
EGAF00007076106 1663030825288 333.9 MB
EGAF00007076107 1663030825288 874.1 MB
EGAF00007076108 1663030825288 332.5 MB
EGAF00007076109 1663031726237 866.7 MB
EGAF00007076110 1663030825287 336.5 MB
EGAF00007076111 1663031726237 875.6 MB
EGAF00007076112 1663031726237 335.9 MB
EGAF00007076113 1663033524553 872.2 MB
EGAF00007076114 1663031726237 355.4 MB
EGAF00007076115 1663030825288 941.5 MB
EGAF00007076116 1663031726237 350.3 MB
EGAF00007076117 1663034423616 922.9 MB
EGAF00007076118 1663031726237 360.0 MB
EGAF00007076119 1663030825288 948.9 MB
EGAF00007076120 1663032628440 353.8 MB
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784 Files (391.5 GB)