Bone marrow microenvironment of 6 newly diagnosed myeloma patients using 10X Genomics scRNA- and TCR-sequencing
10X Genomics scRNA- and TCR-sequencing (Chromium Next GEM Single Cell 5’ Reagent Kit v1.1) was performed on the plasma cell depleted mononuclear fraction of bone marrow aspirates from 6 patients with newly diagnosed multiple myeloma. Generated gene expression libraries were paired-end sequenced on the NovaSeq 6000 S2. Generated V(D)J libraries were paired-end sequenced on the NextSeq 550.
- DAC: EGAC00001000452
- Technologies: Illumina NovaSeq 6000, NextSeq 550
Data Transfer Agreement for the German Cancer Research Center
To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form to collect information about the request, which has to be filled and signed. Your request will be evaluated by the responsible Data Access Committee (DAC). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006090 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00006134000 | fastq.gz | 94.7 MB | ||
| EGAF00006134001 | fastq.gz | 89.1 MB | ||
| EGAF00006134002 | fastq.gz | 89.9 MB | ||
| EGAF00006134003 | fastq.gz | 82.7 MB | ||
| EGAF00006134004 | fastq.gz | 80.8 MB | ||
| EGAF00006134005 | fastq.gz | 75.7 MB | ||
| EGAF00006134012 | fastq.gz | 134.4 MB | ||
| EGAF00006134013 | fastq.gz | 130.1 MB | ||
| EGAF00006134026 | fastq.gz | 82.5 MB | ||
| EGAF00006134027 | fastq.gz | 79.5 MB | ||
| EGAF00006134034 | fastq.gz | 135.0 MB | ||
| EGAF00006134035 | fastq.gz | 121.7 MB | ||
| EGAF00006134038 | fastq.gz | 103.8 MB | ||
| EGAF00006134039 | fastq.gz | 97.1 MB | ||
| EGAF00006134040 | fastq.gz | 103.7 MB | ||
| EGAF00006134041 | fastq.gz | 96.9 MB | ||
| EGAF00006134042 | fastq.gz | 129.4 MB | ||
| EGAF00006134043 | fastq.gz | 120.4 MB | ||
| EGAF00006134052 | fastq.gz | 107.6 MB | ||
| EGAF00006134053 | fastq.gz | 100.2 MB | ||
| EGAF00006134056 | fastq.gz | 90.5 MB | ||
| EGAF00006134057 | fastq.gz | 81.5 MB | ||
| EGAF00006134062 | fastq.gz | 104.6 MB | ||
| EGAF00006134063 | fastq.gz | 96.6 MB | ||
| EGAF00006134064 | fastq.gz | 100.5 MB | ||
| EGAF00006134065 | fastq.gz | 90.5 MB | ||
| EGAF00006134072 | fastq.gz | 73.6 MB | ||
| EGAF00006134073 | fastq.gz | 68.9 MB | ||
| EGAF00006134078 | fastq.gz | 108.3 MB | ||
| EGAF00006134079 | fastq.gz | 103.7 MB | ||
| EGAF00006134082 | fastq.gz | 101.6 MB | ||
| EGAF00006134083 | fastq.gz | 97.1 MB | ||
| EGAF00006134092 | fastq.gz | 99.5 MB | ||
| EGAF00006134093 | fastq.gz | 91.2 MB | ||
| EGAF00006134094 | fastq.gz | 80.2 MB | ||
| EGAF00006134095 | fastq.gz | 73.9 MB | ||
| EGAF00006134096 | fastq.gz | 83.9 MB | ||
| EGAF00006134097 | fastq.gz | 76.5 MB | ||
| EGAF00006134144 | fastq.gz | 102.2 MB | ||
| EGAF00006134145 | fastq.gz | 95.5 MB | ||
| EGAF00006134146 | fastq.gz | 86.6 MB | ||
| EGAF00006134147 | fastq.gz | 80.6 MB | ||
| EGAF00006134148 | fastq.gz | 83.0 MB | ||
| EGAF00006134149 | fastq.gz | 76.3 MB | ||
| EGAF00006134164 | fastq.gz | 89.8 MB | ||
| EGAF00006134165 | fastq.gz | 81.2 MB | ||
| EGAF00006134172 | fastq.gz | 76.3 MB | ||
| EGAF00006134173 | fastq.gz | 71.6 MB | ||
| EGAF00006134320 | fastq.gz | 575.1 MB | ||
| EGAF00006134321 | fastq.gz | 1.5 GB | ||
| EGAF00006134322 | fastq.gz | 526.0 MB | ||
| EGAF00006134323 | fastq.gz | 1.3 GB | ||
| EGAF00006134326 | fastq.gz | 531.2 MB | ||
| EGAF00006134327 | fastq.gz | 1.3 GB | ||
| EGAF00006134350 | fastq.gz | 582.2 MB | ||
| EGAF00006134351 | fastq.gz | 1.5 GB | ||
| EGAF00006134362 | fastq.gz | 629.6 MB | ||
| EGAF00006134363 | fastq.gz | 1.6 GB | ||
| EGAF00006134364 | fastq.gz | 429.5 MB | ||
| EGAF00006134365 | fastq.gz | 1.1 GB | ||
| EGAF00006134406 | fastq.gz | 618.9 MB | ||
| EGAF00006134407 | fastq.gz | 1.6 GB | ||
| EGAF00006134408 | fastq.gz | 410.5 MB | ||
| EGAF00006134409 | fastq.gz | 1.0 GB | ||
| EGAF00006134418 | fastq.gz | 444.4 MB | ||
| EGAF00006134419 | fastq.gz | 1.1 GB | ||
| EGAF00006134440 | fastq.gz | 388.1 MB | ||
| EGAF00006134441 | fastq.gz | 960.9 MB | ||
| EGAF00006134442 | fastq.gz | 830.6 MB | ||
| EGAF00006134443 | fastq.gz | 2.1 GB | ||
| EGAF00006134448 | fastq.gz | 661.5 MB | ||
| EGAF00006134449 | fastq.gz | 1.7 GB | ||
| EGAF00006134462 | fastq.gz | 577.9 MB | ||
| EGAF00006134463 | fastq.gz | 1.5 GB | ||
| EGAF00006134466 | fastq.gz | 767.7 MB | ||
| EGAF00006134467 | fastq.gz | 2.0 GB | ||
| EGAF00006134492 | fastq.gz | 605.6 MB | ||
| EGAF00006134493 | fastq.gz | 1.5 GB | ||
| EGAF00006134496 | fastq.gz | 600.8 MB | ||
| EGAF00006134497 | fastq.gz | 1.5 GB | ||
| EGAF00006134502 | fastq.gz | 391.1 MB | ||
| EGAF00006134503 | fastq.gz | 966.7 MB | ||
| EGAF00006134508 | fastq.gz | 666.9 MB | ||
| EGAF00006134509 | fastq.gz | 1.7 GB | ||
| EGAF00006134510 | fastq.gz | 539.8 MB | ||
| EGAF00006134511 | fastq.gz | 1.4 GB | ||
| EGAF00006134518 | fastq.gz | 524.0 MB | ||
| EGAF00006134519 | fastq.gz | 1.3 GB | ||
| EGAF00006134520 | fastq.gz | 424.9 MB | ||
| EGAF00006134521 | fastq.gz | 1.1 GB | ||
| EGAF00006134532 | fastq.gz | 835.3 MB | ||
| EGAF00006134533 | fastq.gz | 2.1 GB | ||
| EGAF00006134550 | fastq.gz | 802.1 MB | ||
| EGAF00006134551 | fastq.gz | 2.0 GB | ||
| EGAF00006134552 | fastq.gz | 643.1 MB | ||
| EGAF00006134553 | fastq.gz | 1.6 GB | ||
| EGAF00006134592 | fastq.gz | 610.0 MB | ||
| EGAF00006134593 | fastq.gz | 1.6 GB | ||
| EGAF00006134594 | fastq.gz | 543.7 MB | ||
| EGAF00006134595 | fastq.gz | 1.4 GB | ||
| EGAF00006134650 | fastq.gz | 578.4 MB | ||
| EGAF00006134651 | fastq.gz | 1.5 GB | ||
| EGAF00006134652 | fastq.gz | 472.0 MB | ||
| EGAF00006134653 | fastq.gz | 1.2 GB | ||
| EGAF00006134676 | fastq.gz | 464.1 MB | ||
| EGAF00006134677 | fastq.gz | 1.2 GB | ||
| EGAF00006134680 | fastq.gz | 762.1 MB | ||
| EGAF00006134681 | fastq.gz | 1.9 GB | ||
| EGAF00006134732 | fastq.gz | 650.1 MB | ||
| EGAF00006134733 | fastq.gz | 1.7 GB | ||
| EGAF00006134736 | fastq.gz | 810.4 MB | ||
| EGAF00006134737 | fastq.gz | 2.1 GB | ||
| EGAF00006134740 | fastq.gz | 528.1 MB | ||
| EGAF00006134741 | fastq.gz | 1.3 GB | ||
| EGAF00006134750 | fastq.gz | 527.1 MB | ||
| EGAF00006134751 | fastq.gz | 1.3 GB | ||
| EGAF00006134752 | fastq.gz | 521.4 MB | ||
| EGAF00006134753 | fastq.gz | 1.3 GB | ||
| EGAF00006134758 | fastq.gz | 466.2 MB | ||
| EGAF00006134759 | fastq.gz | 1.1 GB | ||
| EGAF00006134760 | fastq.gz | 467.7 MB | ||
| EGAF00006134761 | fastq.gz | 1.2 GB | ||
| EGAF00006134762 | fastq.gz | 456.4 MB | ||
| EGAF00006134763 | fastq.gz | 1.1 GB | ||
| EGAF00006134768 | fastq.gz | 440.9 MB | ||
| EGAF00006134769 | fastq.gz | 1.1 GB | ||
| EGAF00006134830 | fastq.gz | 612.4 MB | ||
| EGAF00006134831 | fastq.gz | 1.5 GB | ||
| EGAF00006134832 | fastq.gz | 406.3 MB | ||
| EGAF00006134833 | fastq.gz | 1.0 GB | ||
| EGAF00006134856 | fastq.gz | 646.2 MB | ||
| EGAF00006134857 | fastq.gz | 1.6 GB | ||
| EGAF00006134862 | fastq.gz | 606.3 MB | ||
| EGAF00006134863 | fastq.gz | 1.5 GB | ||
| EGAF00006134864 | fastq.gz | 636.0 MB | ||
| EGAF00006134865 | fastq.gz | 1.6 GB | ||
| EGAF00006134866 | fastq.gz | 453.2 MB | ||
| EGAF00006134867 | fastq.gz | 1.1 GB | ||
| EGAF00006134868 | fastq.gz | 462.5 MB | ||
| EGAF00006134869 | fastq.gz | 1.1 GB | ||
| EGAF00006134880 | fastq.gz | 468.1 MB | ||
| EGAF00006134881 | fastq.gz | 1.2 GB | ||
| EGAF00006134884 | fastq.gz | 640.0 MB | ||
| EGAF00006134885 | fastq.gz | 1.6 GB | ||
| 144 Files (100.4 GB) | ||||