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Oropharyngeal Squamous Cell Carcinoma Mutanome

This dataset comprises genetic variation data (as somatic indels and snvs VCFs) of 38 OPSCC tumors. WES was done using NextSeq 500 System running in 150 cycles (2x 75bp paired-end) mode. Sequence information was converted to FASTQ format using bcl2fastq v2.20.0.422. VCFs were generated using the Strelka package.

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OPSCC Mutanome Data Policy

Data access policy 1. Applicants must be researchers who are affiliated with an academic institution. 2. Applicants and all collaborators of the applicant who work with the data must be named. 3. Applicant and all collaborators must adhere to this data confidentiality policy. 4. Data must not be shared with other parties. 5. Efforts to identify subjects may under no circumstances be pursued. 6. A short proposal of the research for which the data are going to be used must be shared. 7. Publications using the data must acknowledge and cite the original work linked to the data obtained. 8. When publishing data derived from the analysis of this dataset, sample IDs must remain pseudonymized. New pseudonyms, different from the ones used in the dataset, must be used (double pseudonymization e.g. sample 1, 2, 3…).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006712275 1659698122603 6.2 MB
EGAF00006712276 1659698122603 43.8 kB
EGAF00006712277 1659698122603 7.5 MB
EGAF00006712278 1659698122603 40.5 kB
EGAF00006712279 1659698122603 120.5 kB
EGAF00006712280 1659698122603 49.5 kB
EGAF00006712281 1659698122603 228.2 kB
EGAF00006712282 1659698122603 43.5 kB
EGAF00006712283 1659698122603 5.2 MB
EGAF00006712284 1659698122603 45.6 kB
EGAF00006712285 1659698122603 6.7 MB
EGAF00006712286 1659698122603 42.7 kB
EGAF00006712287 1659698122603 4.4 MB
EGAF00006712288 1659698122603 42.2 kB
EGAF00006712289 1659698122603 13.1 MB
EGAF00006712290 1659698122603 42.5 kB
EGAF00006712291 1659698122603 4.1 MB
EGAF00006712292 1659698122603 42.5 kB
EGAF00006712293 1659698122603 298.6 kB
EGAF00006712294 1659698122603 43.0 kB
EGAF00006712295 1659698122603 348.9 kB
EGAF00006712296 1659698122603 42.1 kB
EGAF00006712297 1659698122603 381.2 kB
EGAF00006712298 1659698122603 42.9 kB
EGAF00006712299 1659698122603 130.9 kB
EGAF00006712300 1659698122603 45.8 kB
EGAF00006712301 1659698122603 165.0 kB
EGAF00006712302 1659698122603 42.4 kB
EGAF00006712303 1659698122603 427.4 kB
EGAF00006712305 1659698122603 136.6 kB
EGAF00006712306 1659698122603 40.5 kB
EGAF00006712307 1659698122603 240.6 kB
EGAF00006712308 1659698122603 40.8 kB
EGAF00006712309 1659698122603 171.8 kB
EGAF00006712310 1659698122603 42.9 kB
EGAF00006712311 1659698122603 113.9 kB
EGAF00006712312 1659698122603 39.8 kB
EGAF00006712314 1659698122603 43.4 kB
EGAF00006712315 1659698122603 402.2 kB
EGAF00006712316 1659698122603 41.6 kB
EGAF00006712317 1659698122603 107.5 kB
EGAF00006712318 1659698122603 41.6 kB
EGAF00006712319 1659698122603 271.6 kB
EGAF00006712320 1659698122603 42.4 kB
EGAF00006712321 1659698122603 185.3 kB
EGAF00006712322 1659698122603 43.1 kB
EGAF00006712323 1659698122603 97.2 kB
EGAF00006712324 1659698122603 40.8 kB
EGAF00006712325 1659698122603 129.8 kB
EGAF00006712326 1659698122603 40.0 kB
EGAF00006712327 1659698122603 103.3 kB
EGAF00006712328 1659698122603 42.6 kB
EGAF00006712329 1659698122603 190.1 kB
EGAF00006712330 1659698122603 42.1 kB
EGAF00006712331 1659698122603 140.7 kB
EGAF00006712332 1659698122603 41.8 kB
EGAF00006712333 1659698122603 109.3 kB
EGAF00006712334 1659698122603 43.4 kB
EGAF00006712335 1659698122603 207.5 kB
EGAF00006712336 1659698122603 44.2 kB
EGAF00006712338 1659698122603 43.7 kB
EGAF00006712339 1659698122603 316.9 kB
EGAF00006712340 1659698122603 41.6 kB
EGAF00006712341 1659698122603 140.1 kB
EGAF00006712342 1659698122603 48.6 kB
EGAF00006712343 1659698122603 169.1 kB
EGAF00006712344 1659698122603 42.7 kB
EGAF00006712345 1659698122603 11.3 MB
EGAF00006712346 1659698122603 41.4 kB
EGAF00006712347 1659698122603 16.7 MB
EGAF00006712348 1659698122603 46.9 kB
EGAF00006712349 1659698122603 3.6 MB
72 Files (85.7 MB)