Oropharyngeal Squamous Cell Carcinoma Mutanome
This dataset comprises genetic variation data (as somatic indels and snvs VCFs) of 38 OPSCC tumors. WES was done using NextSeq 500 System running in 150 cycles (2x 75bp paired-end) mode. Sequence information was converted to FASTQ format using bcl2fastq v2.20.0.422. VCFs were generated using the Strelka package.
- 1 sample
- DAC: EGAC00001002801
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- US DUO:0000026 (version: 2021-02-23)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
OPSCC Mutanome Data Policy
Data access policy 1. Applicants must be researchers who are affiliated with an academic institution. 2. Applicants and all collaborators of the applicant who work with the data must be named. 3. Applicant and all collaborators must adhere to this data confidentiality policy. 4. Data must not be shared with other parties. 5. Efforts to identify subjects may under no circumstances be pursued. 6. A short proposal of the research for which the data are going to be used must be shared. 7. Publications using the data must acknowledge and cite the original work linked to the data obtained. 8. When publishing data derived from the analysis of this dataset, sample IDs must remain pseudonymized. New pseudonyms, different from the ones used in the dataset, must be used (double pseudonymization e.g. sample 1, 2, 3…).
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001006477 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00006712274 | vcf | 48.5 kB | ||
EGAF00006712275 | vcf | 6.2 MB | ||
EGAF00006712276 | vcf | 43.8 kB | ||
EGAF00006712277 | vcf | 7.5 MB | ||
EGAF00006712278 | vcf | 40.5 kB | ||
EGAF00006712279 | vcf | 120.5 kB | ||
EGAF00006712280 | vcf | 49.5 kB | ||
EGAF00006712281 | vcf | 228.2 kB | ||
EGAF00006712282 | vcf | 43.5 kB | ||
EGAF00006712283 | vcf | 5.2 MB | ||
EGAF00006712284 | vcf | 45.6 kB | ||
EGAF00006712285 | vcf | 6.7 MB | ||
EGAF00006712286 | vcf | 42.7 kB | ||
EGAF00006712287 | vcf | 4.4 MB | ||
EGAF00006712288 | vcf | 42.2 kB | ||
EGAF00006712289 | vcf | 13.1 MB | ||
EGAF00006712290 | vcf | 42.5 kB | ||
EGAF00006712291 | vcf | 4.1 MB | ||
EGAF00006712292 | vcf | 42.5 kB | ||
EGAF00006712293 | vcf | 298.6 kB | ||
EGAF00006712294 | vcf | 43.0 kB | ||
EGAF00006712295 | vcf | 348.9 kB | ||
EGAF00006712296 | vcf | 42.1 kB | ||
EGAF00006712297 | vcf | 381.2 kB | ||
EGAF00006712298 | vcf | 42.9 kB | ||
EGAF00006712299 | vcf | 130.9 kB | ||
EGAF00006712300 | vcf | 45.8 kB | ||
EGAF00006712301 | vcf | 165.0 kB | ||
EGAF00006712302 | vcf | 42.4 kB | ||
EGAF00006712303 | vcf | 427.4 kB | ||
EGAF00006712304 | vcf | 41.8 kB | ||
EGAF00006712305 | vcf | 136.6 kB | ||
EGAF00006712306 | vcf | 40.5 kB | ||
EGAF00006712307 | vcf | 240.6 kB | ||
EGAF00006712308 | vcf | 40.8 kB | ||
EGAF00006712309 | vcf | 171.8 kB | ||
EGAF00006712310 | vcf | 42.9 kB | ||
EGAF00006712311 | vcf | 113.9 kB | ||
EGAF00006712312 | vcf | 39.8 kB | ||
EGAF00006712313 | vcf | 211.2 kB | ||
EGAF00006712314 | vcf | 43.4 kB | ||
EGAF00006712315 | vcf | 402.2 kB | ||
EGAF00006712316 | vcf | 41.6 kB | ||
EGAF00006712317 | vcf | 107.5 kB | ||
EGAF00006712318 | vcf | 41.6 kB | ||
EGAF00006712319 | vcf | 271.6 kB | ||
EGAF00006712320 | vcf | 42.4 kB | ||
EGAF00006712321 | vcf | 185.3 kB | ||
EGAF00006712322 | vcf | 43.1 kB | ||
EGAF00006712323 | vcf | 97.2 kB | ||
EGAF00006712324 | vcf | 40.8 kB | ||
EGAF00006712325 | vcf | 129.8 kB | ||
EGAF00006712326 | vcf | 40.0 kB | ||
EGAF00006712327 | vcf | 103.3 kB | ||
EGAF00006712328 | vcf | 42.6 kB | ||
EGAF00006712329 | vcf | 190.1 kB | ||
EGAF00006712330 | vcf | 42.1 kB | ||
EGAF00006712331 | vcf | 140.7 kB | ||
EGAF00006712332 | vcf | 41.8 kB | ||
EGAF00006712333 | vcf | 109.3 kB | ||
EGAF00006712334 | vcf | 43.4 kB | ||
EGAF00006712335 | vcf | 207.5 kB | ||
EGAF00006712336 | vcf | 44.2 kB | ||
EGAF00006712337 | vcf | 184.9 kB | ||
EGAF00006712338 | vcf | 43.7 kB | ||
EGAF00006712339 | vcf | 316.9 kB | ||
EGAF00006712340 | vcf | 41.6 kB | ||
EGAF00006712341 | vcf | 140.1 kB | ||
EGAF00006712342 | vcf | 48.6 kB | ||
EGAF00006712343 | vcf | 169.1 kB | ||
EGAF00006712344 | vcf | 42.7 kB | ||
EGAF00006712345 | vcf | 11.3 MB | ||
EGAF00006712346 | vcf | 41.4 kB | ||
EGAF00006712347 | vcf | 16.7 MB | ||
EGAF00006712348 | vcf | 46.9 kB | ||
EGAF00006712349 | vcf | 3.6 MB | ||
76 Files (86.2 MB) |