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MESA colorectal cancer cfDNA EM-seq dataset

This dataset contains the methylation sequencing data of 60 nonCancer and 70 colorectal cancer cfDNA samples. The methylation library is constructed by using NEBNext Enzymatic-seq Kit.

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MESA data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets generated by Dr. David J. Taggart (details of which are set out in Appendix I) at Helio Genomics, Irvine, CA 92618, USA. In signing this agreement the User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom Helio Genomics grants access to the Data. This includes the User, the individuals listed in Appendix II. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Dr David Taggart and the collaborators listed in Appendix I are responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data: <please insert>   1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries, only with written permission from Helio Genomics. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the Data Producers within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify the Data Producers prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the Data Producers as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Helio Genomics may terminate this agreement by written notice to the User Institution at any time. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will ensure that the Authorized Personnel comply with the terms of this agreement. 19. The User Institution warrants that it has obtained approval by the local institutional review board/research ethics committee (IRB/REC) before the Project commences. 20. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006623497 1659093324936 356.2 MB
EGAF00006623498 1659093324936 513.3 MB
EGAF00006623499 1659093324936 382.1 MB
EGAF00006623500 1659093324936 553.7 MB
EGAF00006623501 1659093324936 319.0 MB
EGAF00006623502 1659094224211 458.1 MB
EGAF00006623503 1659093324936 401.4 MB
EGAF00006623504 1659094224211 585.1 MB
EGAF00006623505 1659093324936 422.4 MB
EGAF00006623506 1659094224211 611.4 MB
EGAF00006623507 1659094224211 354.8 MB
EGAF00006623508 1659094224211 510.4 MB
EGAF00006623509 1659093324936 276.9 MB
EGAF00006623510 1659093324936 400.7 MB
EGAF00006623511 1659093324936 333.8 MB
EGAF00006623512 1659094224211 485.8 MB
EGAF00006623513 1659093324936 339.0 MB
EGAF00006623514 1659094224211 478.7 MB
EGAF00006623515 1659093324936 272.0 MB
EGAF00006623516 1659094224211 391.6 MB
EGAF00006623523 1659094224211 366.7 MB
EGAF00006623525 1659093324936 315.0 MB
EGAF00006623526 1659094224211 452.2 MB
EGAF00006623527 1659093324936 217.1 MB
EGAF00006623528 1659093324936 306.9 MB
EGAF00006623529 1659093324936 334.7 MB
EGAF00006623530 1659093324936 490.4 MB
EGAF00006623531 1659093324936 319.0 MB
EGAF00006623532 1659094224211 467.5 MB
EGAF00006623533 1659093324936 309.5 MB
EGAF00006623534 1659093324936 452.3 MB
EGAF00006623535 1659093324936 378.7 MB
EGAF00006623536 1659094224211 545.3 MB
EGAF00006623537 1659093324936 324.6 MB
EGAF00006623538 1659094224211 463.5 MB
EGAF00006623539 1659093324936 246.8 MB
EGAF00006623540 1659093324936 361.4 MB
EGAF00006623541 1659093324936 213.5 MB
EGAF00006623542 1659093324936 307.9 MB
EGAF00006623543 1659094224211 309.0 MB
EGAF00006623544 1659094224211 452.3 MB
EGAF00006623545 1659093324936 283.7 MB
EGAF00006623546 1659093324936 409.6 MB
EGAF00006623547 1659093324936 288.4 MB
EGAF00006623548 1659093324936 413.4 MB
EGAF00006623549 1659094224211 292.1 MB
EGAF00006623550 1659093324936 429.6 MB
EGAF00006623551 1659094224211 209.3 MB
EGAF00006623552 1659093324936 299.5 MB
EGAF00006623553 1659093324936 281.5 MB
EGAF00006623554 1659093324936 407.6 MB
EGAF00006623555 1659093324936 274.0 MB
EGAF00006623556 1659094224211 401.1 MB
EGAF00006623557 1659093324936 329.4 MB
EGAF00006623558 1659093324936 489.3 MB
EGAF00006623559 1659094224211 283.9 MB
EGAF00006623560 1659093324936 418.8 MB
EGAF00006623561 1659094224211 254.7 MB
EGAF00006623562 1659093324936 368.5 MB
EGAF00006623563 1659094224211 268.1 MB
EGAF00006623564 1659094224211 386.8 MB
EGAF00006623565 1659094224211 208.8 MB
EGAF00006623566 1659093324936 298.9 MB
EGAF00006623567 1659094224211 298.5 MB
EGAF00006623568 1659093324936 431.4 MB
EGAF00006623569 1659094224211 362.0 MB
EGAF00006623570 1659093324936 517.8 MB
EGAF00006623571 1659093324936 286.1 MB
EGAF00006623572 1659093324936 414.8 MB
EGAF00006623573 1659093324936 264.0 MB
EGAF00006623574 1659094224211 385.3 MB
EGAF00006623575 1659094224211 350.2 MB
EGAF00006623576 1659093324936 509.5 MB
EGAF00006623577 1659093324936 210.1 MB
EGAF00006623578 1659093324936 299.5 MB
EGAF00006623579 1659093324936 326.3 MB
EGAF00006623580 1659093324936 466.7 MB
EGAF00006623581 1659093324936 331.8 MB
EGAF00006623582 1659094224211 475.3 MB
EGAF00006623583 1659094224211 256.6 MB
EGAF00006623584 1659093324936 372.1 MB
EGAF00006623585 1659094224211 249.5 MB
EGAF00006623586 1659093324936 358.7 MB
EGAF00006623587 1659093324936 233.1 MB
EGAF00006623588 1659093324936 335.8 MB
EGAF00006623589 1659093324936 273.9 MB
EGAF00006623590 1659094224211 391.5 MB
EGAF00006623591 1659094224211 273.5 MB
EGAF00006623592 1659095123122 406.5 MB
EGAF00006623593 1659094224211 355.1 MB
EGAF00006623594 1659096048080 518.3 MB
EGAF00006623595 1659095123122 270.3 MB
EGAF00006623596 1659095123122 396.3 MB
EGAF00006623597 1659096048080 255.8 MB
EGAF00006623598 1659096048080 363.1 MB
EGAF00006623599 1659095123123 257.2 MB
EGAF00006623600 1659094224211 369.0 MB
EGAF00006623601 1659096048080 293.4 MB
EGAF00006623602 1659096048080 426.5 MB
EGAF00006623603 1659095123122 245.8 MB
EGAF00006623604 1659096048080 355.8 MB
EGAF00006623605 1659096048080 281.0 MB
EGAF00006623606 1659095123123 408.9 MB
EGAF00006623607 1659096048080 252.6 MB
EGAF00006623608 1659096048080 369.7 MB
EGAF00006623609 1659096048080 145.6 MB
EGAF00006623610 1659095123122 205.3 MB
EGAF00006623611 1659096048080 142.6 MB
EGAF00006623612 1659095123123 200.0 MB
EGAF00006623613 1659095123122 165.5 MB
EGAF00006623614 1659095123122 234.5 MB
EGAF00006623615 1659096048080 178.9 MB
EGAF00006623616 1659094224211 252.9 MB
EGAF00006623617 1659093324936 191.6 MB
EGAF00006623618 1659093324936 272.3 MB
EGAF00006623619 1659094224211 209.9 MB
EGAF00006623620 1659095123122 301.0 MB
EGAF00006623621 1659095123122 184.4 MB
EGAF00006623622 1659096048080 259.1 MB
EGAF00006623623 1659096048080 206.7 MB
EGAF00006623624 1659095123122 291.6 MB
EGAF00006623625 1659096048080 237.0 MB
EGAF00006623626 1659096048080 334.3 MB
EGAF00006623627 1659095123122 215.6 MB
EGAF00006623628 1659096048080 303.7 MB
EGAF00006623629 1659096048080 190.5 MB
EGAF00006623630 1659093324936 271.8 MB
EGAF00006623631 1659096048080 225.6 MB
EGAF00006623632 1659096048080 317.6 MB
EGAF00006623633 1659096929129 218.6 MB
EGAF00006623634 1659096048080 305.9 MB
EGAF00006623635 1659096048080 174.8 MB
EGAF00006623636 1659096048080 244.3 MB
EGAF00006623637 1659096929129 169.9 MB
EGAF00006623638 1659096048080 237.4 MB
EGAF00006623639 1659096929129 245.5 MB
EGAF00006623640 1659096048080 336.0 MB
EGAF00006623641 1659096048080 180.1 MB
EGAF00006623642 1659096048080 254.5 MB
EGAF00006623643 1659096929129 144.5 MB
EGAF00006623644 1659096929129 200.9 MB
EGAF00006623645 1659096929129 244.9 MB
EGAF00006623646 1659096929129 349.4 MB
EGAF00006623647 1659096929129 274.9 MB
EGAF00006623648 1659096048080 383.9 MB
EGAF00006623649 1659096929129 238.1 MB
EGAF00006623650 1659096929129 330.2 MB
EGAF00006623651 1659096929129 216.5 MB
EGAF00006623652 1659096929129 308.3 MB
EGAF00006623653 1659096929129 174.3 MB
EGAF00006623654 1659096929129 246.7 MB
EGAF00006623655 1659096929129 167.8 MB
EGAF00006623656 1659096929129 236.8 MB
EGAF00006623657 1659096929129 228.1 MB
EGAF00006623658 1659096929129 326.3 MB
EGAF00006623659 1659096929129 210.9 MB
EGAF00006623660 1659096929129 304.0 MB
EGAF00006623661 1659096929129 226.3 MB
EGAF00006623662 1659096929129 319.8 MB
EGAF00006623663 1659096929129 225.9 MB
EGAF00006623664 1659096929129 314.7 MB
EGAF00006623665 1659096929129 263.0 MB
EGAF00006623666 1659096929129 381.0 MB
EGAF00006623667 1659096929129 167.0 MB
EGAF00006623668 1659096929129 238.3 MB
EGAF00006623669 1659096929129 206.1 MB
EGAF00006623670 1659096929129 292.0 MB
EGAF00006623671 1659096929129 236.4 MB
EGAF00006623672 1659096929129 336.1 MB
EGAF00006623673 1659093324936 209.6 MB
EGAF00006623674 1659094224211 294.9 MB
EGAF00006623675 1659093324936 292.4 MB
EGAF00006623676 1659093324936 412.9 MB
EGAF00006623677 1659093324936 358.3 MB
EGAF00006623678 1659093324936 520.9 MB
EGAF00006623679 1659094224211 221.0 MB
EGAF00006623680 1659093324936 308.4 MB
EGAF00006623681 1659093324936 190.3 MB
EGAF00006623682 1659093324936 269.4 MB
EGAF00006623683 1659093324936 204.8 MB
EGAF00006623684 1659094224211 291.8 MB
EGAF00006623685 1659093324936 199.3 MB
EGAF00006623686 1659093324936 280.5 MB
EGAF00006623687 1659093324936 159.1 MB
EGAF00006623688 1659093324936 223.8 MB
EGAF00006623689 1659093324936 157.0 MB
EGAF00006623690 1659093324936 219.9 MB
EGAF00006623691 1659093324936 222.4 MB
EGAF00006623692 1659093324936 314.5 MB
EGAF00006623693 1659093324936 223.5 MB
EGAF00006623694 1659093324936 308.4 MB
EGAF00006623695 1659093324936 225.1 MB
EGAF00006623696 1659093324936 320.4 MB
EGAF00006623697 1659093324936 248.2 MB
EGAF00006623698 1659094224211 352.7 MB
EGAF00006623699 1659093324936 358.2 MB
EGAF00006623700 1659093324936 503.6 MB
EGAF00006623701 1659093324936 217.5 MB
EGAF00006623702 1659093324936 304.9 MB
EGAF00006623703 1659093324936 209.8 MB
EGAF00006623704 1659093324936 296.6 MB
EGAF00006623705 1659093324936 246.0 MB
EGAF00006623706 1659093324936 354.5 MB
EGAF00006623707 1659093324936 227.0 MB
EGAF00006623708 1659093324936 319.2 MB
EGAF00006623709 1659093324936 179.2 MB
EGAF00006623710 1659093324936 253.4 MB
EGAF00006623711 1659094224211 196.0 MB
EGAF00006623712 1659093324936 272.1 MB
EGAF00006623713 1659094224211 174.3 MB
EGAF00006623714 1659094224211 251.7 MB
EGAF00006623715 1659093324936 342.5 MB
EGAF00006623716 1659094224211 498.0 MB
EGAF00006623717 1659094224211 177.7 MB
EGAF00006623718 1659093324936 256.9 MB
EGAF00006623719 1659094224211 203.3 MB
EGAF00006623720 1659094224211 283.2 MB
EGAF00006623721 1659093324936 177.7 MB
EGAF00006623722 1659094224211 251.8 MB
EGAF00006623723 1659093324936 251.7 MB
EGAF00006623724 1659094224211 356.2 MB
EGAF00006623725 1659093324936 204.9 MB
EGAF00006623726 1659093324936 293.9 MB
EGAF00006623727 1659093324936 167.5 MB
EGAF00006623728 1659093324936 242.0 MB
EGAF00006623729 1659094224211 249.0 MB
EGAF00006623730 1659094224211 360.4 MB
EGAF00006623731 1659093324936 280.7 MB
EGAF00006623732 1659094224211 409.4 MB
EGAF00006623733 1659094224211 200.0 MB
EGAF00006623734 1659094224211 288.2 MB
EGAF00006623735 1659094224211 259.9 MB
EGAF00006623736 1659094224211 379.4 MB
EGAF00006623737 1659093324936 269.6 MB
EGAF00006623738 1659093324936 382.8 MB
EGAF00006623739 1659094224211 256.9 MB
EGAF00006623740 1659093324936 362.3 MB
EGAF00006623741 1659094224211 199.2 MB
EGAF00006623742 1659093324936 284.8 MB
EGAF00006623743 1659094224211 253.0 MB
EGAF00006623744 1659093324936 358.2 MB
EGAF00006623745 1659093324936 205.8 MB
EGAF00006623746 1659093324936 289.0 MB
EGAF00006623747 1659093324936 276.2 MB
EGAF00006623748 1659093324936 393.3 MB
EGAF00006623749 1659093324936 231.0 MB
EGAF00006623750 1659093324936 337.5 MB
EGAF00006623751 1659093324936 225.8 MB
EGAF00006623752 1659093324936 316.0 MB
EGAF00006623753 1659093324936 186.6 MB
EGAF00006623754 1659094224211 263.5 MB
EGAF00006623755 1659093324936 176.4 MB
EGAF00006623756 1659093324936 250.9 MB
253 Files (76.6 GB)