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Southern African Prostate Cancer Study (SAPCS) Ethnic Disparity

The cohort (n=130) consists of prostate cancer patients from South Africa (n=123) and Brazil (n=7). For each patient, a pair of blood and tumour samples were collected. The sequencing data was mapped to hg38 reference. Blood BAMs are named with “-B” as suffix and tumour BAMs are named with “-T” as suffix.

Request Access

Genomic data of SAPCS

SAPCS Data Access Committee The SAPCS Data Access Committee (DAC) consists of eight members, including clinicians, pathologists, researchers, local community and consumer representatives. The SAPCS-DAC is under management of a manager. Members will meet monthly (by zoom, when required) to consider requests. Quorum for decision-making will be a minimum of five members and include at least two of the SAPCS Directors. Decisions will be made by consensus. Application Procedures The SAPCS-DAC will consider requests for published data from all researchers. Data will only be released to researchers who can provide a statement of ethics approval from the IRB I Human Research Ethics Committee (HREC) of their host institution to safeguard patient rights. Before submitting a request, applicants are encouraged to confer with the main contact Prof. Hayes to discuss the appropriateness of the data for the proposed study and the feasibility of the request. The following information will be requested in applications for Data access: (i) The applicant's name, institution, email address, (ii) The research question/hypotheses to be tested, (iii) List of data required, (iv) Statistical justification for the number and types of cases required (where applicable), (v) Brief description of the technical approach, (vi) Evidence of the proposed technical approach's prior successful use (where applicable), (vi) IRB/HREC approval number (and copy of approval if requested) to conduct proposed research (external applicants). Decision-making As all data has been generated through peer-reviewed funding mechanisms, research projects may well be underway to address relevant questions, as such, priority will need to be given to already funded SAPCS research efforts. The SAPCS-DAC will make decisions on approval of access to data using the following criteria: (i) The track record of the applicants in the technical approach and likelihood of significant outcomes from the research proposed. (ii) Non-overlap with projects being undertaken by the SAPCS team (except with compelling justification). (iii) Alignment of the research purpose with patient’s informed consent and ethics approval (e.g., restrictions as to commercial research, or other requirements needing additional approval). (iv) Any other restrictions or conditions that may apply to the use or disclosure of the relevant data. The SAPCS-DAC can impose certain restrictions on all approvals, and/or specific restrictions on approvals, as follows: (i) No transfer to third parties allowed (all). (ii) Acknowledgment of the SAPCS in publications/presentations (all). (iii) A report of the results of the research to be provided to DAC after completion (or when requested). (iv) Researchers cannot utilize the data for commercial purposes (all). (v) Approval will not be given that excludes other researchers from accessing data (all). (vi) Approval might be time-limited exclusive rights for a particular research development (particular). After approval by the DAC, the Database Manager will organize for the data to be sent de-identified to the researchers or allow access through an established database. Responsibilities It is the responsibility of the applicants to: (i) Provide a research proposal that justifies the request for data (adequate preliminary data); (ii) consult with a SAPCS Director prior to making an application; (iii) submit an email request to SAPCS-DAC Manager; (iv) obtain appropriate IRB/HREC approval for the use of the data; (v) appropriately acknowledge SAPCS in publications using relevant data. It is the responsibility of Data Access Committee to: (i) Review applications and approve the release of data based on the scientific value of the research proposal that is not in conflict with current SAPCS approved/funded studies; (ii) coordinate data release, (iii) review the completed data and publication.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006474030 1657799121237 121.7 GB
EGAF00006474031 1658225721050 198.8 GB
EGAF00006474032 1657790124766 93.8 GB
EGAF00006474033 1657876524198 124.8 GB
EGAF00006474034 1657840413197 108.5 GB
EGAF00006474035 1658256321039 198.2 GB
EGAF00006474036 1658167221915 77.7 GB
EGAF00006474037 1658196921264 160.9 GB
EGAF00006474038 1657893621751 114.3 GB
EGAF00006474039 1658187921531 214.5 GB
EGAF00006474040 1657845022913 95.4 GB
EGAF00006474041 1658161821105 236.4 GB
EGAF00006474042 1657805421284 86.1 GB
EGAF00006474043 1658244621042 181.4 GB
EGAF00006474044 1657909833986 113.9 GB
EGAF00006474045 1658240121086 209.9 GB
EGAF00006474046 1657813521423 90.6 GB
EGAF00006474047 1658222121571 226.8 GB
EGAF00006474048 1657817121521 104.5 GB
EGAF00006474049 1658202322445 215.0 GB
EGAF00006474050 1658210423237 81.6 GB
EGAF00006474051 1658215821925 192.4 GB
EGAF00006474052 1657859421834 76.6 GB
EGAF00006474053 1658204128488 208.0 GB
EGAF00006474054 1657890924275 97.1 GB
EGAF00006474055 1658172641011 196.2 GB
EGAF00006474056 1658210423237 100.1 GB
EGAF00006474057 1657904422416 170.9 GB
EGAF00006474058 1657898126085 103.8 GB
EGAF00006474059 1658198721627 210.2 GB
EGAF00006474060 1657810821585 95.2 GB
EGAF00006474061 1658234721705 199.7 GB
EGAF00006474062 1657845022913 92.0 GB
EGAF00006474063 1657902628000 167.5 GB
EGAF00006474064 1657917026328 107.3 GB
EGAF00006474065 1658167221915 217.4 GB
EGAF00006474066 1657804521394 99.7 GB
EGAF00006474067 1658207727606 165.4 GB
EGAF00006474068 1657831553393 98.1 GB
EGAF00006474069 1658200524163 168.2 GB
EGAF00006474070 1657845022913 98.3 GB
EGAF00006474071 1658249121155 186.0 GB
EGAF00006474072 1658209523337 94.3 GB
EGAF00006474073 1657925122741 180.6 GB
EGAF00006474074 1658204128488 90.9 GB
EGAF00006474075 1658158221206 183.5 GB
EGAF00006474076 1658222121571 95.7 GB
EGAF00006474077 1658155521284 149.0 GB
EGAF00006474078 1657827055656 81.7 GB
EGAF00006474079 1657870221276 158.9 GB
EGAF00006474080 1657840413197 97.6 GB
EGAF00006474081 1658224821038 172.0 GB
EGAF00006474082 1657843224486 107.5 GB
EGAF00006474083 1658238321046 209.8 GB
EGAF00006474084 1658223921046 121.3 GB
EGAF00006474085 1658204128488 204.2 GB
EGAF00006474086 1657770321554 74.3 GB
EGAF00006474087 1658203221980 169.7 GB
EGAF00006474088 1657772121168 89.5 GB
EGAF00006474089 1657844124943 187.7 GB
EGAF00006474090 1657860321185 82.3 GB
EGAF00006474091 1657801823951 161.2 GB
EGAF00006474092 1657760421082 67.0 GB
EGAF00006474093 1657782024378 144.0 GB
EGAF00006474094 1657761321058 75.8 GB
EGAF00006474095 1657794621191 178.1 GB
EGAF00006474096 1657767621124 82.7 GB
EGAF00006474097 1657820724803 206.4 GB
EGAF00006474098 1657762221170 99.2 GB
EGAF00006474099 1658233821731 172.4 GB
EGAF00006474100 1658216721589 93.8 GB
EGAF00006474101 1657832447765 181.7 GB
EGAF00006474102 1657753938590 72.2 GB
EGAF00006474103 1657742421149 73.0 GB
EGAF00006474104 1657746921074 92.4 GB
EGAF00006474105 1658165423247 203.8 GB
EGAF00006474106 1657800921367 108.2 GB
EGAF00006474107 1657773022264 171.7 GB
EGAF00006474108 1657776622416 111.1 GB
EGAF00006474109 1657837824467 173.7 GB
EGAF00006474110 1657807221420 110.9 GB
EGAF00006474111 1657870221276 175.1 GB
EGAF00006474112 1657744221132 95.0 GB
EGAF00006474113 1657822538118 162.5 GB
EGAF00006474114 1657732521311 82.5 GB
EGAF00006474115 1657845022913 175.8 GB
EGAF00006474116 1657812621433 88.8 GB
EGAF00006474117 1658245521026 185.7 GB
EGAF00006474118 1657780221101 80.2 GB
EGAF00006474119 1658206826042 171.4 GB
EGAF00006474120 1657836030131 97.3 GB
EGAF00006474121 1657828873242 151.7 GB
EGAF00006474122 1657764921203 96.2 GB
EGAF00006474123 1657901726271 149.4 GB
EGAF00006474124 1657806321295 92.2 GB
EGAF00006474125 1657756821064 184.9 GB
EGAF00006474126 1657888222225 85.8 GB
EGAF00006474127 1658196021312 210.4 GB
EGAF00006474128 1658155521284 112.7 GB
EGAF00006474129 1657907127684 189.4 GB
EGAF00006474130 1657869321290 101.0 GB
EGAF00006474131 1658241021099 193.1 GB
EGAF00006474132 1657850422306 72.9 GB
EGAF00006474133 1658237421397 196.5 GB
EGAF00006474134 1657851326136 79.1 GB
EGAF00006474135 1657821640272 143.3 GB
EGAF00006474136 1657797564559 84.0 GB
EGAF00006474137 1657886421558 175.4 GB
EGAF00006474138 1657757721142 100.2 GB
EGAF00006474139 1657787424299 183.6 GB
EGAF00006474140 1657735221190 100.4 GB
EGAF00006474141 1657765821070 161.0 GB
EGAF00006474142 1657863021173 81.6 GB
EGAF00006474143 1657737921114 167.7 GB
EGAF00006474144 1658152821303 86.5 GB
EGAF00006474145 1657840413197 150.4 GB
EGAF00006474146 1657836030131 112.8 GB
EGAF00006474147 1657835134885 197.0 GB
EGAF00006474148 1657883261067 104.0 GB
EGAF00006474149 1658241921131 204.4 GB
EGAF00006474150 1657791922593 117.2 GB
EGAF00006474151 1658242821221 239.4 GB
EGAF00006474152 1657875628358 96.6 GB
EGAF00006474153 1657817121521 196.9 GB
EGAF00006474154 1657749621177 100.3 GB
EGAF00006474155 1657895425846 185.2 GB
EGAF00006474156 1657793721155 83.6 GB
EGAF00006474157 1657810821585 156.3 GB
EGAF00006474158 1657811721564 87.6 GB
EGAF00006474159 1658166322415 157.5 GB
EGAF00006474160 1657836030131 101.7 GB
EGAF00006474161 1658209523337 196.0 GB
EGAF00006474162 1657740621129 91.0 GB
EGAF00006474163 1657740621129 180.5 GB
EGAF00006474164 1657783823492 88.2 GB
EGAF00006474165 1658185563958 198.3 GB
EGAF00006474166 1657845922955 103.0 GB
EGAF00006474167 1658228652444 194.4 GB
EGAF00006474168 1657892721863 97.2 GB
EGAF00006474169 1658169030813 182.0 GB
EGAF00006474170 1657804521394 91.6 GB
EGAF00006474171 1657820724803 199.2 GB
EGAF00006474172 1657764921203 114.1 GB
EGAF00006474173 1658237421397 157.7 GB
EGAF00006474174 1657826174536 91.8 GB
EGAF00006474175 1657836924761 197.3 GB
EGAF00006474176 1657728921128 93.9 GB
EGAF00006474177 1657915223719 188.7 GB
EGAF00006474178 1657726221136 83.4 GB
EGAF00006474179 1657776622416 174.0 GB
EGAF00006474180 1657732521311 90.4 GB
EGAF00006474181 1657845922955 142.4 GB
EGAF00006474182 1657741521079 96.0 GB
EGAF00006474183 1658180725568 164.7 GB
EGAF00006474184 1657782922684 108.8 GB
EGAF00006474185 1657798221124 193.9 GB
EGAF00006474186 1657734321125 80.0 GB
EGAF00006474187 1657738821131 143.7 GB
EGAF00006474188 1657762221170 84.4 GB
EGAF00006474189 1658184325269 168.6 GB
EGAF00006474190 1657733421158 78.5 GB
EGAF00006474191 1658185563958 247.6 GB
EGAF00006474192 1657772121168 110.4 GB
EGAF00006474193 1658204128488 210.7 GB
EGAF00006474194 1657827055656 107.9 GB
EGAF00006474195 1658174452857 150.9 GB
EGAF00006474196 1657787424299 115.0 GB
EGAF00006474197 1657904422416 166.2 GB
EGAF00006474198 1657780221101 80.4 GB
EGAF00006474199 1657895425846 151.2 GB
EGAF00006474200 1657766721050 92.5 GB
EGAF00006474201 1657787424299 142.7 GB
EGAF00006474202 1657755021113 124.1 GB
EGAF00006474203 1658199621235 251.6 GB
EGAF00006474204 1657890924275 86.5 GB
EGAF00006474205 1657745121116 158.4 GB
EGAF00006474206 1657782024378 113.5 GB
EGAF00006474207 1658389521075 231.6 GB
EGAF00006474208 1658233821731 100.4 GB
EGAF00006474209 1658217621792 201.3 GB
EGAF00006474210 1658228652444 112.2 GB
EGAF00006474211 1657835134885 215.8 GB
EGAF00006474212 1657829776065 124.8 GB
EGAF00006474213 1657840413197 192.0 GB
EGAF00006474214 1657926680541 117.6 GB
EGAF00006474215 1658195121230 204.5 GB
EGAF00006474216 1657800921367 111.3 GB
EGAF00006474217 1657854021422 165.1 GB
EGAF00006474218 1657875628358 130.7 GB
EGAF00006474219 1658163621454 204.9 GB
EGAF00006474220 1657735221190 100.7 GB
EGAF00006474221 1658208623018 199.1 GB
EGAF00006474222 1657783823492 94.0 GB
EGAF00006474223 1657877424152 185.7 GB
EGAF00006474224 1657811721564 97.6 GB
EGAF00006474225 1657861221216 160.9 GB
EGAF00006474226 1657773921596 81.3 GB
EGAF00006474227 1657862121304 187.9 GB
EGAF00006474228 1657820724803 99.7 GB
EGAF00006474229 1658178058305 163.2 GB
EGAF00006474230 1657816221480 99.0 GB
EGAF00006474231 1658224821038 189.8 GB
EGAF00006474232 1657906229648 117.0 GB
EGAF00006474233 1658245521026 223.8 GB
EGAF00006474234 1657885522711 132.7 GB
EGAF00006474235 1658173553863 227.3 GB
EGAF00006474236 1658233821731 98.8 GB
EGAF00006474237 1657841423478 185.8 GB
EGAF00006474238 1657873823197 86.3 GB
EGAF00006474239 1658207727606 188.4 GB
EGAF00006474240 1657885522711 124.4 GB
EGAF00006474241 1658195121230 190.7 GB
EGAF00006474242 1657906229648 174.3 GB
EGAF00006474243 1657758621139 200.2 GB
EGAF00006474244 1657735221190 95.2 GB
EGAF00006474245 1658194222837 265.4 GB
EGAF00006474246 1657806321295 119.4 GB
EGAF00006474247 1657865721186 242.3 GB
EGAF00006474248 1657773022264 104.0 GB
EGAF00006474249 1658261721016 218.5 GB
EGAF00006474250 1657862121304 112.8 GB
EGAF00006474251 1657899926355 248.4 GB
EGAF00006474252 1657764921203 115.5 GB
EGAF00006474253 1658187921531 196.0 GB
EGAF00006474254 1657745121116 106.6 GB
EGAF00006474255 1657845922955 234.1 GB
EGAF00006474256 1657776622416 87.2 GB
EGAF00006474257 1658206826042 183.1 GB
EGAF00006474258 1657831553394 101.0 GB
EGAF00006474259 1657790124766 201.9 GB
EGAF00006474260 1658198721627 88.7 GB
EGAF00006474261 1657838722696 252.9 GB
EGAF00006474262 1657873823197 109.5 GB
EGAF00006474263 1658250021118 204.2 GB
EGAF00006474264 1657873823197 97.0 GB
EGAF00006474265 1657753938590 140.1 GB
EGAF00006474266 1657763121137 93.3 GB
EGAF00006474267 1657758621139 152.6 GB
EGAF00006474268 1657869321290 97.5 GB
EGAF00006474269 1657845922955 176.3 GB
EGAF00006474270 1658177137792 129.6 GB
EGAF00006474271 1658248221219 242.8 GB
EGAF00006474272 1657774822048 99.5 GB
EGAF00006474273 1657922424022 164.7 GB
EGAF00006474274 1657826174536 94.4 GB
EGAF00006474275 1658195121230 182.8 GB
EGAF00006474276 1657830665373 97.1 GB
EGAF00006474277 1658177137792 163.8 GB
EGAF00006474278 1657762221170 85.2 GB
EGAF00006474279 1657755021113 209.4 GB
EGAF00006474280 1657773022264 121.4 GB
EGAF00006474281 1658187021495 208.4 GB
EGAF00006474282 1657868421200 80.6 GB
EGAF00006474283 1658242821221 156.0 GB
EGAF00006474284 1657881923965 92.7 GB
EGAF00006474285 1657806321295 175.2 GB
EGAF00006474286 1657804521394 143.1 GB
EGAF00006474287 1657836924761 162.5 GB
EGAF00006474288 1657780221101 106.6 GB
EGAF00006474289 1657750521095 250.0 GB
260 Files (37.2 TB)