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Garvan/St Vincent’s Prostate Cancer Tissue and Data

The cohort (n=53) consists of prostate cancer patients from Australia. For each patient, a pair of blood and tumour samples were collected. The sequencing data was mapped to hg38 reference. Blood BAMs are named with “-B” as suffix and tumour BAMs are named with “-T” as suffix.

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Garvan/St Vincent’s Prostate Cancer Tissue and Data policy

The Tissue/Data Access Committee (TDAC) consists of seven members, including researchers, pathologists, a consumer representative, and a data expert. The committee Manager will be the secretary to the committee and will be the contact person for receiving applications and distributing them to the committee. The committee will meet monthly (either in person or by zoom) to review the Tissue/Data Access application forms (circulated by email) to consider requests. Quorum for decision-making will be a minimum of 4 members and include at least one of the chief Investigators and one Garvan member. Decisions will be made by consensus. Any member of the Committee directly involved in the application, or having a COI with applicants, can provide a view on the application but will not vote or take part in decision-making. Application Procedures The TDAC will consider requests for biospecimens and/or clinical data from all researchers. Biospecimens and associated clinical data from the Database/Tissue Bank will only be released to researchers who can provide a statement of ethics approval from the Clinical Investigation I Human Research Ethics Committee of their host institution in order to safeguard patient rights. The following information will be requested in applications for Data/Tissue access: • The applicant's name, institution, email address and telephone number • The research question/hypotheses to be tested • List of biospecimens or clinical data required • Statistical justification for the number and types of cases required (where applicable) • Brief description of the technical approach (for biospecimen I TMA release) • Evidence of the proposed technical approach's prior successful use (where applicable) • HREC approval number (and copy of approval if requested) to conduct proposed research (external applicants) Before submitting a request/release form, applicants will be encouraged to confer with the Database/Tissue Bank Manager and/or authorized representative to discuss the appropriateness of the biospecimens and/or clinical data for the proposed study and the feasibility of the request. Decision-making The TDAC will make decisions on approval of access to tissue/data using the following criteria: 1. The availability of tissue 2. The track record of the applicants in the technical approach and likelihood of significant outcomes from the research proposed 3. Non-overlap with projects being undertaken by the Prostate Group (except with compelling justification) 4. Alignment of the research purpose with patient’s informed consent and ethics approval (eg restrictions as to commercial research, or other requirements needing additional approval) 5. Any other restrictions or conditions that may apply to the uses or disclosures of the relevant tissue/data The TDAC can impose certain restrictions on all approvals, and/or specific restrictions on particular approvals, as follows: 1. No transfer to third parties allowed (all) 2. Acknowledgment of the Database/Tissue Bank in publications/presentations (all) 3. A report of the results of the research to be provided to TDAC after completion (or when requested) 4. Researchers can freely utilize the tissue/data for non-commercial research, but not for commercial purposes without the approval of TDAC and Garvan’s BD office (all) 5. Approval will not be given that excludes other researchers from accessing tissue/data (all) 6. Approval might be time-limited exclusive rights for a particular research development (particular) After approval by the TDAC, the Database/Tissue Manager will organize for the data and/or biospecimens to be sent de-identified to the researchers. Responsibilities It is the responsibility of the applicants to: • Provide a research proposal that justifies the request for tissue and/or data (adequate preliminary data) • Consult with a researcher on the Tissue/Data Access Committee prior to making an application • Submit a request/release form to the delegated Manager of the Database/Tissue Bank. • Obtain appropriate HREC approval/authorization for the use of tissue/data. It is the responsibility of Tissue/Data Access Committee to: • Review applications and approve the release of tissue and/or data based on the scientific value of the research proposal and the availability of the resource • Coordinate pre-exit examination of biospecimens and/or clinical data • Coordinate biospecimen and/or clinical data release • Review the completed data and publication

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006473924 1657846823262 102.2 GB
EGAF00006473925 1658239221170 201.9 GB
EGAF00006473926 1657803621429 118.5 GB
EGAF00006473927 1658201424350 168.6 GB
EGAF00006473928 1657827055656 105.7 GB
EGAF00006473929 1658205025974 195.3 GB
EGAF00006473930 1657876524198 82.1 GB
EGAF00006473931 1657893621751 165.4 GB
EGAF00006473932 1657851326136 124.1 GB
EGAF00006473933 1658234721705 202.0 GB
EGAF00006473934 1657893621751 115.1 GB
EGAF00006473935 1658235621114 193.0 GB
EGAF00006473936 1657870221276 113.8 GB
EGAF00006473937 1657872021290 185.9 GB
EGAF00006473938 1658196921264 91.9 GB
EGAF00006473939 1658239221170 155.8 GB
EGAF00006473940 1657758621139 85.3 GB
EGAF00006473941 1658250921502 196.2 GB
EGAF00006473942 1657804521394 104.0 GB
EGAF00006473943 1658202322445 194.1 GB
EGAF00006473944 1657767621124 124.8 GB
EGAF00006473945 1657874722847 194.8 GB
EGAF00006473946 1658221221779 221.9 GB
EGAF00006473947 1658234721705 240.7 GB
EGAF00006473948 1657853121976 78.5 GB
EGAF00006473949 1657881923965 146.6 GB
EGAF00006473950 1657754121063 95.2 GB
EGAF00006473951 1657818021933 148.7 GB
EGAF00006473952 1657744221132 107.2 GB
EGAF00006473953 1658212221742 199.7 GB
EGAF00006473954 1657762221170 110.9 GB
EGAF00006473955 1658236521069 174.4 GB
EGAF00006473956 1657846823262 88.9 GB
EGAF00006473957 1658250921502 285.0 GB
EGAF00006473958 1657787424299 125.4 GB
EGAF00006473959 1657771221080 241.6 GB
EGAF00006473960 1657812621433 87.5 GB
EGAF00006473961 1657914323331 166.9 GB
EGAF00006473962 1657834236072 71.0 GB
EGAF00006473963 1658390421009 222.9 GB
EGAF00006473964 1657869321290 86.1 GB
EGAF00006473965 1658163621454 176.2 GB
EGAF00006473966 1657878325087 115.3 GB
EGAF00006473967 1658166322415 224.9 GB
EGAF00006473968 1657806321296 122.3 GB
EGAF00006473969 1658250921502 241.2 GB
EGAF00006473970 1657795521251 94.9 GB
EGAF00006473971 1658241021099 189.1 GB
EGAF00006473972 1657763121137 83.7 GB
EGAF00006473973 1658169030813 171.0 GB
EGAF00006473974 1657873823197 109.1 GB
EGAF00006473975 1658238321046 190.0 GB
EGAF00006473976 1657825288141 83.8 GB
EGAF00006473977 1657889121680 159.6 GB
EGAF00006473978 1657763121137 83.8 GB
EGAF00006473979 1657917922063 170.2 GB
EGAF00006473980 1658152821303 84.8 GB
EGAF00006473981 1657908921929 135.0 GB
EGAF00006473982 1657846823262 87.5 GB
EGAF00006473983 1657903525697 151.6 GB
EGAF00006473984 1657846823262 104.1 GB
EGAF00006473985 1657922424022 220.2 GB
EGAF00006473986 1657907127684 109.0 GB
EGAF00006473987 1657800021358 186.5 GB
EGAF00006473988 1658157321278 91.1 GB
EGAF00006473989 1658191522545 175.2 GB
EGAF00006473990 1657914323331 107.8 GB
EGAF00006473991 1657918823308 183.0 GB
EGAF00006473992 1657846823262 88.6 GB
EGAF00006473993 1657927827801 194.0 GB
EGAF00006473994 1658194222837 105.2 GB
EGAF00006473995 1657800021358 195.3 GB
EGAF00006473996 1657778422362 94.3 GB
EGAF00006473997 1657824343793 148.5 GB
EGAF00006473998 1658176242231 113.0 GB
EGAF00006473999 1658250921502 238.3 GB
EGAF00006474000 1658184325268 86.8 GB
EGAF00006474001 1657892721863 178.0 GB
EGAF00006474002 1657898126085 108.3 GB
EGAF00006474003 1658242821221 283.7 GB
EGAF00006474004 1657790124766 107.2 GB
EGAF00006474005 1657795521251 170.6 GB
EGAF00006474006 1657818922343 87.8 GB
EGAF00006474007 1657912527669 132.0 GB
EGAF00006474008 1657818922343 93.0 GB
EGAF00006474009 1658232025838 164.5 GB
EGAF00006474010 1657794621191 91.7 GB
EGAF00006474011 1657799121237 194.7 GB
EGAF00006474012 1657787424299 116.7 GB
EGAF00006474013 1658254521052 203.4 GB
EGAF00006474014 1657851326136 103.3 GB
EGAF00006474015 1657863921366 231.0 GB
EGAF00006474016 1657848622073 99.1 GB
EGAF00006474017 1657819822179 173.2 GB
EGAF00006474018 1658207727606 126.8 GB
EGAF00006474019 1658259921014 235.5 GB
EGAF00006474020 1658219421816 216.9 GB
EGAF00006474021 1658254521052 207.9 GB
EGAF00006474022 1657860321184 102.0 GB
EGAF00006474023 1657840413197 210.5 GB
EGAF00006474024 1657896324291 98.1 GB
EGAF00006474025 1658216721589 176.8 GB
EGAF00006474026 1657789223048 113.5 GB
EGAF00006474027 1658212221742 153.2 GB
EGAF00006474028 1658160921739 113.3 GB
EGAF00006474029 1658228652444 196.0 GB
106 Files (15.7 TB)