Triple negative breast cancer matched patient and pdx dataset
PDX aCGH (txt), WES (fastq) and RNASeq (fastq) samples from mice treated with cisplatin. Primary samples and matched pdx samples from multiple passages. Models from the Marie Curie Instute (HBCx1, HBCx4B, HBCx8, HBCx10, HBCx12B, HBCx14, HBCx15, HBCx16, HBCx17, HBCx23, HBCx24, HBCx27, HBCx28, HBCx30, HBCx31, HBCx33, HBCx39, HBCx40, HBCx43, HBCx51, HBCx63, HBCx66, HBCx92, HBCx106) and the NKI (T127, T162, T241, T250, T283, T302, T336).
- 71 samples
- DAC: EGAC00001002749
- Technologies: Illumina HiSeq 2000, unspecified
NKI Data Access Policy
To request access to the TNBCpdx datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00006419146 | 1656674121596 | 2.0 GB | ||
| EGAF00006419147 | 1656674121596 | 2.1 GB | ||
| EGAF00006419148 | 1656674121596 | 1.9 GB | ||
| EGAF00006419149 | 1656674121596 | 1.9 GB | ||
| EGAF00006419150 | 1656674121595 | 2.3 GB | ||
| EGAF00006419151 | 1656674121595 | 2.3 GB | ||
| EGAF00006419152 | 1656674121596 | 2.8 GB | ||
| EGAF00006419153 | 1656674121596 | 2.8 GB | ||
| EGAF00006419154 | 1656674121595 | 2.7 GB | ||
| EGAF00006419155 | 1656674121595 | 2.7 GB | ||
| EGAF00006419156 | 1656674121595 | 3.2 GB | ||
| EGAF00006419157 | 1656674121595 | 3.2 GB | ||
| EGAF00006419158 | 1656674121595 | 5.6 GB | ||
| EGAF00006419159 | 1656674121595 | 6.0 GB | ||
| EGAF00006419160 | 1656674121595 | 751.9 MB | ||
| EGAF00006419161 | 1656674121595 | 734.8 MB | ||
| EGAF00006419162 | 1656674121595 | 762.3 MB | ||
| EGAF00006419163 | 1656674121596 | 753.9 MB | ||
| EGAF00006419164 | 1656674121595 | 848.7 MB | ||
| EGAF00006419165 | 1656674121595 | 843.7 MB | ||
| EGAF00006419166 | 1656674121595 | 771.0 MB | ||
| EGAF00006419167 | 1656674121595 | 749.4 MB | ||
| EGAF00006419168 | 1656674121595 | 765.2 MB | ||
| EGAF00006419169 | 1656674121595 | 742.9 MB | ||
| EGAF00006419170 | 1656674121595 | 717.7 MB | ||
| EGAF00006419171 | 1656674121595 | 702.5 MB | ||
| EGAF00006419172 | 1656674121595 | 493.2 MB | ||
| EGAF00006419173 | 1656674121595 | 479.3 MB | ||
| EGAF00006419174 | 1656674121595 | 490.1 MB | ||
| EGAF00006419175 | 1656674121595 | 475.8 MB | ||
| EGAF00006419176 | 1656674121595 | 459.3 MB | ||
| EGAF00006419177 | 1656674121595 | 449.5 MB | ||
| EGAF00006419178 | 1656674121595 | 856.4 MB | ||
| EGAF00006419179 | 1656674121595 | 852.7 MB | ||
| EGAF00006419180 | 1656674121595 | 938.0 MB | ||
| EGAF00006419181 | 1656674121595 | 935.3 MB | ||
| EGAF00006419182 | 1656674121595 | 996.9 MB | ||
| EGAF00006419183 | 1656674121595 | 997.3 MB | ||
| EGAF00006419184 | 1656674121595 | 414.4 MB | ||
| EGAF00006419185 | 1656674121595 | 414.5 MB | ||
| EGAF00006419186 | 1656674121595 | 420.7 MB | ||
| EGAF00006419187 | 1656674121595 | 418.8 MB | ||
| EGAF00006419188 | 1656674121595 | 398.5 MB | ||
| EGAF00006419189 | 1656674121595 | 397.8 MB | ||
| EGAF00006419190 | 1656674121595 | 766.4 MB | ||
| EGAF00006419191 | 1656674121595 | 764.2 MB | ||
| EGAF00006419192 | 1656674121596 | 838.1 MB | ||
| EGAF00006419193 | 1656674121596 | 837.0 MB | ||
| EGAF00006419194 | 1656674121595 | 889.9 MB | ||
| EGAF00006419195 | 1656674121596 | 891.9 MB | ||
| EGAF00006419196 | 1656674121596 | 1.1 GB | ||
| EGAF00006419197 | 1656674121595 | 1.1 GB | ||
| EGAF00006419198 | 1656674121595 | 1.1 GB | ||
| EGAF00006419199 | 1656674121595 | 1.1 GB | ||
| EGAF00006419200 | 1656674121595 | 1.1 GB | ||
| EGAF00006419201 | 1656674121595 | 1.1 GB | ||
| EGAF00006419202 | 1656674121595 | 3.0 GB | ||
| EGAF00006419203 | 1656674121595 | 3.1 GB | ||
| EGAF00006419204 | 1656674121595 | 3.0 GB | ||
| EGAF00006419205 | 1656674121595 | 3.1 GB | ||
| EGAF00006419206 | 1656674121595 | 2.0 GB | ||
| EGAF00006419207 | 1656674121595 | 2.1 GB | ||
| EGAF00006419208 | 1656674121595 | 2.0 GB | ||
| EGAF00006419209 | 1656674121595 | 2.1 GB | ||
| EGAF00006419210 | 1656674121595 | 4.0 GB | ||
| EGAF00006419211 | 1656674121595 | 4.2 GB | ||
| EGAF00006419212 | 1656674121595 | 19.7 MB | ||
| EGAF00006419213 | 1656674121595 | 19.7 MB | ||
| EGAF00006419214 | 1656674121595 | 19.7 MB | ||
| EGAF00006419215 | 1656674121595 | 19.7 MB | ||
| EGAF00006419216 | 1656674121595 | 19.7 MB | ||
| EGAF00006419217 | 1656674121595 | 19.7 MB | ||
| EGAF00006419218 | 1656674121595 | 19.7 MB | ||
| EGAF00006419219 | 1656674121595 | 19.7 MB | ||
| EGAF00006419220 | 1656674121595 | 19.7 MB | ||
| EGAF00006419221 | 1656674121595 | 19.7 MB | ||
| EGAF00006419222 | 1656674121595 | 19.6 MB | ||
| EGAF00006419223 | 1656674121595 | 19.7 MB | ||
| EGAF00006419224 | 1656674121595 | 19.7 MB | ||
| EGAF00006419225 | 1656674121595 | 19.7 MB | ||
| EGAF00006419226 | 1656674121595 | 19.7 MB | ||
| EGAF00006419227 | 1656674121595 | 19.7 MB | ||
| EGAF00006419228 | 1656674121595 | 19.7 MB | ||
| EGAF00006419229 | 1656674121595 | 19.7 MB | ||
| EGAF00006419230 | 1656674121595 | 19.7 MB | ||
| EGAF00006419231 | 1656674121595 | 19.7 MB | ||
| EGAF00006419232 | 1656674121595 | 19.7 MB | ||
| EGAF00006419233 | 1656674121595 | 19.7 MB | ||
| EGAF00006419234 | 1656674121595 | 19.7 MB | ||
| EGAF00006419235 | 1656674121595 | 19.7 MB | ||
| EGAF00006419236 | 1656674121595 | 19.7 MB | ||
| EGAF00006419237 | 1656674121595 | 19.7 MB | ||
| EGAF00006419238 | 1656674121595 | 19.7 MB | ||
| EGAF00006419239 | 1656674121595 | 19.7 MB | ||
| EGAF00006419240 | 1656674121596 | 19.7 MB | ||
| EGAF00006419241 | 1656674121596 | 19.7 MB | ||
| EGAF00006419242 | 1656674121596 | 19.7 MB | ||
| EGAF00006419243 | 1656674121596 | 19.7 MB | ||
| EGAF00006419244 | 1656674121595 | 19.7 MB | ||
| EGAF00006419245 | 1656674121595 | 19.7 MB | ||
| EGAF00006419246 | 1656674121595 | 19.7 MB | ||
| EGAF00006419247 | 1656674121595 | 19.7 MB | ||
| EGAF00006419248 | 1656674121595 | 19.7 MB | ||
| EGAF00006419249 | 1656674121595 | 19.5 MB | ||
| EGAF00006419250 | 1656674121595 | 19.5 MB | ||
| EGAF00006419251 | 1656674121595 | 19.5 MB | ||
| EGAF00006419252 | 1656674121595 | 19.5 MB | ||
| EGAF00006419253 | 1656674121595 | 19.5 MB | ||
| EGAF00006419254 | 1656674121595 | 19.5 MB | ||
| EGAF00006419255 | 1656674121595 | 19.6 MB | ||
| EGAF00006419256 | 1656674121595 | 19.6 MB | ||
| EGAF00006419257 | 1656674121595 | 19.6 MB | ||
| EGAF00006419258 | 1656674121595 | 19.5 MB | ||
| EGAF00006419259 | 1656674121595 | 19.5 MB | ||
| EGAF00006419260 | 1656674121595 | 19.6 MB | ||
| EGAF00006419261 | 1656674121596 | 19.6 MB | ||
| EGAF00006419262 | 1656674121596 | 19.6 MB | ||
| EGAF00006419263 | 1656674121595 | 19.6 MB | ||
| EGAF00006419264 | 1656674121596 | 19.6 MB | ||
| EGAF00006419265 | 1656674121596 | 19.6 MB | ||
| EGAF00006419266 | 1656674121596 | 19.6 MB | ||
| EGAF00006419267 | 1656674121596 | 19.6 MB | ||
| EGAF00006419268 | 1656674121596 | 19.6 MB | ||
| EGAF00006419269 | 1656674121596 | 19.6 MB | ||
| EGAF00006419270 | 1656674121595 | 19.6 MB | ||
| EGAF00006419271 | 1656674121595 | 19.7 MB | ||
| EGAF00006419272 | 1656674121596 | 19.7 MB | ||
| EGAF00006419273 | 1656674121596 | 19.7 MB | ||
| EGAF00006419274 | 1656674121596 | 19.6 MB | ||
| EGAF00006419275 | 1656674121596 | 19.6 MB | ||
| EGAF00006419276 | 1656674121596 | 19.6 MB | ||
| EGAF00006419277 | 1656674121596 | 19.6 MB | ||
| EGAF00006419278 | 1656674121596 | 19.7 MB | ||
| EGAF00006419279 | 1656674121596 | 19.6 MB | ||
| EGAF00006419280 | 1656674121596 | 19.6 MB | ||
| EGAF00006419281 | 1656674121596 | 19.6 MB | ||
| EGAF00006419282 | 1656674121596 | 19.6 MB | ||
| EGAF00006419283 | 1656674121596 | 19.6 MB | ||
| 138 Files (102.9 GB) | ||||