Detection of cancer cell transcriptomes
Single cell transcriptomes, generated using chromium 10X 3' sequencing, for two tumour types (AT/RT, and Ewing's sarcoma). For each individual, tumour and normal whole genome sequencing was also obtained using Illumina short read sequencing to an average depth of 30X. These data were used to validate the accuracy of a method for identifying cancer cell transcriptomes based on the allelic shift produced by copy number changes.
- 15 samples
- DAC: EGAC00001000205
- Technologies: HiSeq X Ten, Illumina HiSeq 2500, Illumina HiSeq 4000, Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other | ||
| Transcriptome Analysis | ||
| Cancer Genomics | ||
| Cancer Genomics | ||
| Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004694957 | cram | 441.5 MB | ||
| EGAF00004855875 | cram | 7.6 GB | ||
| EGAF00004855878 | cram | 7.8 GB | ||
| EGAF00004855881 | cram | 7.4 GB | ||
| EGAF00004855884 | cram | 7.6 GB | ||
| EGAF00004855887 | cram | 7.5 GB | ||
| EGAF00005207128 | 1619138956834 | 1.4 GB | ||
| EGAF00005207129 | 1619138284886 | 1.8 GB | ||
| EGAF00005207130 | 1619141466186 | 2.0 GB | ||
| EGAF00005207131 | 1619139122955 | 1.7 GB | ||
| EGAF00005207132 | 1619140003086 | 1.8 GB | ||
| EGAF00005207133 | 1619141343157 | 1.8 GB | ||
| EGAF00005207134 | 1619137083682 | 1.5 GB | ||
| EGAF00005207135 | 1619140003086 | 2.0 GB | ||
| EGAF00005207136 | 1619139194320 | 2.1 GB | ||
| EGAF00005207137 | 1619138764124 | 633.4 MB | ||
| EGAF00005207138 | 1619139363435 | 1.8 GB | ||
| EGAF00005207139 | 1619137576006 | 2.0 GB | ||
| EGAF00005207140 | 1619137877960 | 1.3 GB | ||
| EGAF00005207141 | 1619138764124 | 1.6 GB | ||
| EGAF00005207142 | 1619137445394 | 1.8 GB | ||
| EGAF00005207143 | 1619137698360 | 1.5 GB | ||
| EGAF00005207144 | 1619137817065 | 1.7 GB | ||
| EGAF00005207145 | 1619137698360 | 1.6 GB | ||
| EGAF00005207146 | 1619138703240 | 1.4 GB | ||
| EGAF00005207147 | 1619138284886 | 1.8 GB | ||
| EGAF00005207148 | 1619140003086 | 1.9 GB | ||
| EGAF00005207149 | cram | 351.2 MB | ||
| EGAF00005207150 | 1619137636440 | 1.6 GB | ||
| EGAF00005207151 | 1619136418491 | 1.8 GB | ||
| EGAF00005207172 | 1619140515638 | 2.4 GB | ||
| EGAF00005207173 | 1619138419819 | 1.7 GB | ||
| EGAF00005207174 | 1619139317843 | 3.4 GB | ||
| EGAF00005207175 | 1619138119220 | 2.1 GB | ||
| EGAF00005207176 | 1619137759403 | 2.4 GB | ||
| EGAF00005207177 | 1619138419819 | 2.5 GB | ||
| EGAF00005207178 | 1619137576005 | 2.5 GB | ||
| EGAF00005207179 | 1619137636440 | 2.7 GB | ||
| EGAF00005207260 | cram | 4.9 GB | ||
| EGAF00005207261 | cram | 4.6 GB | ||
| EGAF00005207262 | cram | 4.1 GB | ||
| EGAF00005207263 | cram | 4.9 GB | ||
| EGAF00005207264 | 1619140818467 | 5.2 GB | ||
| EGAF00005207265 | 1619140874364 | 3.9 GB | ||
| EGAF00005207266 | 1619140003087 | 3.9 GB | ||
| EGAF00005207267 | 1619144102979 | 5.5 GB | ||
| EGAF00005207268 | 1619142797728 | 5.7 GB | ||
| EGAF00005207269 | cram | 6.4 GB | ||
| EGAF00005207270 | 1619141295800 | 4.0 GB | ||
| EGAF00005207271 | 1619131933621 | 5.8 GB | ||
| EGAF00005489102 | 1632920707941 | 15.9 GB | ||
| EGAF00005489103 | 1632940624951 | 23.6 GB | ||
| EGAF00005489104 | 1632923775196 | 14.1 GB | ||
| EGAF00005489105 | 1632917032250 | 16.7 GB | ||
| EGAF00005489111 | 1632919496687 | 16.0 GB | ||
| EGAF00005489112 | 1632924911406 | 23.7 GB | ||
| EGAF00005489113 | 1632926519742 | 14.1 GB | ||
| EGAF00005489114 | 1632950821670 | 16.7 GB | ||
| EGAF00006270023 | 1656501326153 | 315.0 MB | ||
| EGAF00006270024 | 1656501326153 | 369.0 MB | ||
| EGAF00006270025 | 1656501326153 | 431.5 MB | ||
| EGAF00006270026 | 1656501326153 | 424.4 MB | ||
| EGAF00006270027 | 1656501326153 | 311.3 MB | ||
| EGAF00006270028 | 1656501326153 | 364.5 MB | ||
| EGAF00006270029 | 1656501326153 | 426.7 MB | ||
| EGAF00006270030 | 1656501326153 | 419.9 MB | ||
| EGAF00006270031 | 1656501326153 | 312.1 MB | ||
| EGAF00006270032 | 1656501326153 | 365.3 MB | ||
| EGAF00006270033 | 1656501326153 | 427.7 MB | ||
| EGAF00006270034 | 1656501326153 | 420.1 MB | ||
| EGAF00006270035 | 1656501326153 | 310.9 MB | ||
| EGAF00006270036 | 1656502221208 | 363.9 MB | ||
| EGAF00006270037 | 1656501326153 | 426.4 MB | ||
| EGAF00006270038 | 1656502221208 | 418.7 MB | ||
| EGAF00006270039 | 1656501326153 | 309.0 MB | ||
| EGAF00006270040 | 1656501326153 | 361.9 MB | ||
| EGAF00006270041 | 1656502221208 | 424.1 MB | ||
| EGAF00006270042 | 1656501326153 | 416.3 MB | ||
| EGAF00006270043 | 1656501326153 | 310.9 MB | ||
| EGAF00006270044 | 1656501326153 | 363.7 MB | ||
| EGAF00006270045 | 1656501326153 | 426.7 MB | ||
| EGAF00006270046 | 1656501326153 | 418.5 MB | ||
| EGAF00006270047 | 1656501326153 | 307.4 MB | ||
| EGAF00006270048 | 1656501326153 | 359.9 MB | ||
| EGAF00006270049 | 1656501326153 | 421.6 MB | ||
| EGAF00006270050 | 1656501326153 | 414.7 MB | ||
| EGAF00006270051 | 1656501326153 | 308.5 MB | ||
| EGAF00006270052 | 1656502221208 | 360.8 MB | ||
| EGAF00006270053 | 1656502221208 | 422.9 MB | ||
| EGAF00006270054 | 1656501326153 | 415.3 MB | ||
| 90 Files (308.5 GB) | ||||