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Clonal somatic copy number altered driver events inform drug sensitivity in high-grade serous ovarian cancer.

This dataset consists of shallow whole genome sequencing data and amplicon sequencing data for 26 ovarian cancer patients (21 high-grade serous ovarian cancer, 4 low-grade serous ovarian cancer and 1 clear cell ovarian cancer). The data are provided as single end FASTQ files for the shallow whole genome sequencing data (31 libraries) and paired end FASTQ files for the amplicon sequencing data (98 libraries).

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Data Access policy - Brenton Lab

Data Access Request Form – Brenton Lab, CRUK-CI, University of Cambridge, UK These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE of The Old Schools, Trinity Lane, Cambridge CB2 1TN, United Kingdom and the Cambridge University Hospitals NHS Foundation Trust of Addenbrooke’s Hospital, Cambridge, CB2 0QQ; represented by staff of the Brenton Group at the Cancer Research UK Cambridge Institute, and contactable by email at james.brenton@cruk.cam.ac.uk or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number, hospital number or NHS number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. 2. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. 3. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. 4. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 5. You agree to acknowledge in any Publication based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. 6. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 7. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. 8. You recognise that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. 9. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 10. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 11. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. 12. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organisational measures against the unauthorised or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A 1.1 You acknowledge and agree that the Data is pseudonymised Data and that You will become the Data Controller on receipt of such Data. 1.2 You will only process the Data for the purpose of carrying out the Project. 1.3 You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. 1.4 The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. 1.5 You agree that You shall not analyse or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. 1.6 You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data.   Schedule B Name of the applicant and co-applicant(s), including affiliations, titles and contact details. For dataset deposited at EGA, applicants must have registered accounts at EGA. Student applicants must include their supervisors as a co-applicant. Name of Registered User Email Job Title Supervisor* Title of Project (in less than 30 words) Data Requested (please indicate relevant publication(s) describing the data, accession number(s) and/or relevant links to data, and [where relevant] details of and links to the respective Data Access Committee(s) (DAC)) Research Project: Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data and include key references. Brief description of the infrastructure and experience for handling the requested data securely Signature of authorized signatory of User Institution Signature: Name: Title: Date: Signature of Principal Investigator I confirm that I have read and understood the TERMS AND CONDITIONS as set forth in this DATA ACCESS REQUEST FORM. Signature: Name: Title: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006143680 1649675161970 124.3 MB
EGAF00006143681 1649675102257 142.1 MB
EGAF00006143682 1649675291285 177.1 MB
EGAF00006143683 1649675221269 205.7 MB
EGAF00006143684 1649675161970 129.3 MB
EGAF00006143685 1649675102257 147.1 MB
EGAF00006143686 1649675291285 531.8 MB
EGAF00006143687 1649675161970 128.5 MB
EGAF00006143688 1649675102257 144.6 MB
EGAF00006143689 1649675161970 102.3 MB
EGAF00006143690 1649675221269 115.8 MB
EGAF00006143691 1649675102257 111.7 MB
EGAF00006143692 1649675161970 123.6 MB
EGAF00006143693 1649675291285 144.8 MB
EGAF00006143694 1649675043649 171.0 MB
EGAF00006143695 1649675043649 128.2 MB
EGAF00006143696 1649675043649 145.0 MB
EGAF00006143697 1649675221269 124.4 MB
EGAF00006143698 1649675043649 141.9 MB
EGAF00006143699 1649675043649 194.0 MB
EGAF00006143700 1649675043649 220.8 MB
EGAF00006143701 1649675161970 241.0 MB
EGAF00006143702 1649675102257 274.1 MB
EGAF00006143703 1649674987460 56.8 MB
EGAF00006143704 1649674987461 62.9 MB
EGAF00006143705 1649675043649 167.4 MB
EGAF00006143706 1649675221269 185.8 MB
EGAF00006143707 1649675043649 50.6 MB
EGAF00006143708 1649674987461 57.2 MB
EGAF00006143709 1649675221269 176.1 MB
EGAF00006143710 1649675161970 198.3 MB
EGAF00006143711 1649675221269 163.6 MB
EGAF00006143712 1649675102257 185.2 MB
EGAF00006143713 1649675291285 150.6 MB
EGAF00006143714 1649675102257 175.5 MB
EGAF00006143715 1649675043649 199.7 MB
EGAF00006143716 1649675102257 230.9 MB
EGAF00006143717 1649674987460 126.2 MB
EGAF00006143718 1649675161970 140.9 MB
EGAF00006143719 1649675043649 159.0 MB
EGAF00006143720 1649675102257 178.6 MB
EGAF00006143721 1649675043649 123.3 MB
EGAF00006143722 1649675043649 138.6 MB
EGAF00006143723 1649675043649 150.1 MB
EGAF00006143724 1649675161970 174.8 MB
EGAF00006143725 1649675102257 71.9 MB
EGAF00006143726 1649675102257 79.3 MB
EGAF00006143727 1649675221269 211.3 MB
EGAF00006143728 1649675043649 245.3 MB
EGAF00006143729 1649675102257 198.2 MB
EGAF00006143730 1649675161970 229.3 MB
EGAF00006143731 1649675102257 188.0 MB
EGAF00006143732 1649675291285 210.9 MB
EGAF00006143733 1649675043649 110.2 MB
EGAF00006143734 1649675043649 120.0 MB
EGAF00006143735 1649675043649 115.5 MB
EGAF00006143736 1649675161970 131.0 MB
EGAF00006143737 1649674987460 24.1 MB
EGAF00006143738 1649675043649 26.5 MB
EGAF00006143739 1649675102257 132.2 MB
EGAF00006143740 1649675102257 148.8 MB
EGAF00006143741 1649675102257 134.9 MB
EGAF00006143742 1649674987460 152.8 MB
EGAF00006143743 1649675043649 143.1 MB
EGAF00006143744 1649675043649 159.7 MB
EGAF00006143745 1649675102257 123.4 MB
EGAF00006143746 1649675102257 138.6 MB
EGAF00006143747 1649675221269 172.8 MB
EGAF00006143748 1649675043649 191.7 MB
EGAF00006143749 1649675291285 609.1 MB
EGAF00006143750 1649675043649 144.1 MB
EGAF00006143751 1649674987460 162.5 MB
EGAF00006143752 1649675161970 503.0 MB
EGAF00006143753 1649674987460 134.7 MB
EGAF00006143754 1649674987460 156.3 MB
EGAF00006143755 1649675291285 799.7 MB
EGAF00006143756 1649675043649 123.2 MB
EGAF00006143757 1649675043649 139.6 MB
EGAF00006143758 1649675221269 129.7 MB
EGAF00006143759 1649674987460 147.0 MB
EGAF00006143760 1649675102257 174.2 MB
EGAF00006143761 1649675043649 201.6 MB
EGAF00006143762 1649675043649 155.1 MB
EGAF00006143763 1649674987460 180.2 MB
EGAF00006143764 1649675161970 134.9 MB
EGAF00006143765 1649675043649 154.2 MB
EGAF00006143766 1649675043649 154.5 MB
EGAF00006143767 1649675043649 171.3 MB
EGAF00006143768 1649674987460 99.0 MB
EGAF00006143769 1649674987460 110.6 MB
EGAF00006143770 1649675291285 451.4 MB
EGAF00006143771 1649674987460 140.2 MB
EGAF00006143772 1649674987460 157.7 MB
EGAF00006143773 1649675291285 552.0 MB
EGAF00006143774 1649675102257 376.3 MB
EGAF00006143775 1649675291285 618.9 MB
EGAF00006143776 1649675102257 126.2 MB
EGAF00006143777 1649674987460 147.7 MB
EGAF00006143778 1649675043649 42.9 MB
EGAF00006143779 1649674987460 43.9 MB
EGAF00006143780 1649674987460 78.1 MB
EGAF00006143781 1649674987460 90.2 MB
EGAF00006143782 1649675291285 145.5 MB
EGAF00006143783 1649675102257 166.1 MB
EGAF00006143784 1649675161970 454.5 MB
EGAF00006143785 1649675102257 151.0 MB
EGAF00006143786 1649675043649 170.6 MB
EGAF00006143787 1649675291285 665.8 MB
EGAF00006143788 1649674987460 142.9 MB
EGAF00006143789 1649675221269 160.3 MB
EGAF00006143790 1649675291285 628.1 MB
EGAF00006143791 1649675043649 117.7 MB
EGAF00006143792 1649675102257 133.2 MB
EGAF00006143793 1649675102257 156.1 MB
EGAF00006143794 1649675043649 178.1 MB
EGAF00006143795 1649675043649 153.7 MB
EGAF00006143796 1649674987460 172.6 MB
EGAF00006143797 1649675043649 151.6 MB
EGAF00006143798 1649675102257 166.4 MB
EGAF00006143799 1649674987460 126.9 MB
EGAF00006143800 1649674987460 148.0 MB
EGAF00006143801 1649675221269 190.4 MB
EGAF00006143802 1649675102257 213.4 MB
EGAF00006143803 1649675043649 204.8 MB
EGAF00006143804 1649675043649 230.3 MB
EGAF00006143805 1649675102257 277.9 MB
EGAF00006143806 1649675043649 660.7 MB
EGAF00006143807 1649675221269 148.7 MB
EGAF00006143808 1649675043649 166.6 MB
EGAF00006143809 1649675102257 154.1 MB
EGAF00006143810 1649675102257 173.0 MB
EGAF00006143811 1649675102257 38.2 MB
EGAF00006143812 1649674987461 39.4 MB
EGAF00006143813 1649675043649 254.2 MB
EGAF00006143814 1649675043649 176.7 MB
EGAF00006143815 1649675043649 202.1 MB
EGAF00006143816 1649675291285 766.2 MB
EGAF00006143817 1649675291285 675.6 MB
EGAF00006143818 1649675043649 44.1 MB
EGAF00006143819 1649675043649 48.2 MB
EGAF00006143820 1649675043649 48.6 MB
EGAF00006143821 1649675344355 635.5 MB
EGAF00006143822 1649674987460 121.5 MB
EGAF00006143823 1649675221269 141.7 MB
EGAF00006143824 1649675221269 144.9 MB
EGAF00006143825 1649675161970 153.5 MB
EGAF00006143826 1649674987460 38.8 MB
EGAF00006143827 1649675102257 43.1 MB
EGAF00006143828 1649675291285 788.2 MB
EGAF00006143829 1649675102257 182.3 MB
EGAF00006143830 1649675161970 205.4 MB
EGAF00006143831 1649675102257 174.1 MB
EGAF00006143832 1649675102257 193.7 MB
EGAF00006143833 1649675344355 808.2 MB
EGAF00006143834 1649675161970 323.0 MB
EGAF00006143835 1649675221269 244.6 MB
EGAF00006143836 1649675401377 906.4 MB
EGAF00006143837 1649675291285 673.8 MB
EGAF00006143838 1649675102257 126.5 MB
EGAF00006143839 1649675102257 143.8 MB
EGAF00006143840 1649675102257 119.1 MB
EGAF00006143841 1649675161970 135.1 MB
EGAF00006143842 1649675043649 134.1 MB
EGAF00006143843 1649675043649 152.3 MB
EGAF00006143844 1649675043649 120.4 MB
EGAF00006143845 1649675161970 132.8 MB
EGAF00006143846 1649675291285 551.5 MB
EGAF00006143847 1649675291285 547.6 MB
EGAF00006143848 1649675043649 123.2 MB
EGAF00006143849 1649675102257 141.4 MB
EGAF00006143850 1649675102257 166.1 MB
EGAF00006143851 1649675221269 189.3 MB
EGAF00006143852 1649675043649 112.2 MB
EGAF00006143853 1649675102257 130.7 MB
EGAF00006143854 1649675161970 115.1 MB
EGAF00006143855 1649675102257 129.6 MB
EGAF00006143856 1649674987460 127.5 MB
EGAF00006143857 1649675043649 143.4 MB
EGAF00006143858 1649675460021 148.6 MB
EGAF00006143859 1649675043649 172.2 MB
EGAF00006143860 1649674987460 45.2 MB
EGAF00006143861 1649675043649 47.2 MB
EGAF00006143862 1649675102257 208.7 MB
EGAF00006143863 1649675161970 237.9 MB
EGAF00006143864 1649675043649 79.1 MB
EGAF00006143865 1649674987460 82.9 MB
EGAF00006143866 1649675043649 676.9 MB
EGAF00006143867 1649674987460 112.8 MB
EGAF00006143868 1649675102257 122.4 MB
EGAF00006143869 1649675102257 176.1 MB
EGAF00006143870 1649675102257 203.3 MB
EGAF00006143871 1649675043649 220.4 MB
EGAF00006143872 1649675043649 247.5 MB
EGAF00006143873 1649675043649 139.6 MB
EGAF00006143874 1649675043649 160.4 MB
EGAF00006143875 1649675043649 230.1 MB
EGAF00006143876 1649675102257 262.4 MB
EGAF00006143877 1649675221269 187.0 MB
EGAF00006143878 1649675102257 213.4 MB
EGAF00006143879 1649675221269 170.6 MB
EGAF00006143880 1649675043649 185.1 MB
EGAF00006143881 1649675043649 174.2 MB
EGAF00006143882 1649675221269 194.6 MB
EGAF00006143883 1649675161970 139.1 MB
EGAF00006143884 1649675221269 157.6 MB
EGAF00006143885 1649675043649 151.6 MB
EGAF00006143886 1649675043649 169.1 MB
EGAF00006143887 1649675161970 195.5 MB
EGAF00006143888 1649675102257 225.4 MB
EGAF00006143889 1649675102257 208.9 MB
EGAF00006143890 1649675291285 238.6 MB
EGAF00006143891 1649675102257 464.5 MB
EGAF00006143892 1649675043649 200.0 MB
EGAF00006143893 1649675102257 227.5 MB
EGAF00006143894 1649675043649 160.2 MB
EGAF00006143895 1649675102257 187.0 MB
EGAF00006143896 1649675043649 155.8 MB
EGAF00006143897 1649675161970 180.1 MB
EGAF00006143898 1649675161970 664.8 MB
EGAF00006143899 1649675291285 503.2 MB
EGAF00006143900 1649675221269 619.5 MB
EGAF00006143901 1649675102257 196.5 MB
EGAF00006143902 1649675161970 222.2 MB
EGAF00006143903 1649675043649 99.8 MB
EGAF00006143904 1649675043649 109.1 MB
EGAF00006143905 1649675043649 119.6 MB
EGAF00006143906 1649675161970 135.8 MB
227 Files (46.7 GB)