Fastq and reference alignment of 19 samples for defining structural variation associated with breast cancer susceptibility by long-read genome sequencing
Long-read genome sequencing performed on the Oxford Nanopore Technologies' PromethION to resolve variants underlying breast cancer susceptibility in sixteen individuals with pathogenic germline SVs in BRCA1, BRCA2, CHEK2 or PALB2.
- 16 samples
- DAC: EGAC00000000011
- Technology: PromethION
- RS DUO:0000012 (version: 2021-02-23)research specific restrictionsThis data use modifier indicates that use is limited to studies of a certain research type.
- RU DUO:0000014 (version: 2019-01-07)research use onlyThis data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
- TS DUO:0000025 (version: 2021-02-23)time limit on useThis data use modifier indicates that use is approved for a specific number of months.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005872 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00006127188 | fastq.gz | 68.9 GB | ||
| EGAF00006127189 | fastq.gz | 80.9 GB | ||
| EGAF00006127190 | fastq.gz | 95.9 GB | ||
| EGAF00006127191 | fastq.gz | 86.0 GB | ||
| EGAF00006127192 | fastq.gz | 57.3 GB | ||
| EGAF00006127193 | fastq.gz | 69.1 GB | ||
| EGAF00006127194 | fastq.gz | 50.6 GB | ||
| EGAF00006127195 | fastq.gz | 61.5 GB | ||
| EGAF00006127196 | fastq.gz | 42.3 GB | ||
| EGAF00006127197 | fastq.gz | 56.3 GB | ||
| EGAF00006127198 | fastq.gz | 75.3 GB | ||
| EGAF00006127199 | fastq.gz | 98.0 GB | ||
| EGAF00006127200 | fastq.gz | 117.3 GB | ||
| EGAF00006127201 | fastq.gz | 110.4 GB | ||
| EGAF00006127202 | fastq.gz | 89.5 GB | ||
| EGAF00006127203 | fastq.gz | 76.6 GB | ||
| EGAF00006127216 | bam | 104.7 GB | ||
| EGAF00006127217 | bam | 120.5 GB | ||
| EGAF00006127218 | bam | 143.7 GB | ||
| EGAF00006127219 | bam | 132.0 GB | ||
| EGAF00006127220 | bam | 89.3 GB | ||
| EGAF00006127221 | bam | 106.1 GB | ||
| EGAF00006127222 | bam | 74.5 GB | ||
| EGAF00006127223 | bam | 88.3 GB | ||
| EGAF00006127224 | bam | 64.6 GB | ||
| EGAF00006127225 | bam | 85.6 GB | ||
| EGAF00006127226 | bam | 115.5 GB | ||
| EGAF00006127227 | bam | 141.9 GB | ||
| EGAF00006127228 | bam | 173.6 GB | ||
| EGAF00006127229 | bam | 160.8 GB | ||
| EGAF00006127230 | bam | 133.0 GB | ||
| EGAF00006127231 | bam | 114.4 GB | ||
| EGAF00007920319 | bam | 46.0 GB | ||
| EGAF00007920320 | bam | 57.1 GB | ||
| EGAF00007920321 | bam | 42.9 GB | ||
| EGAF00007920322 | fastq.gz | 41.5 GB | ||
| EGAF00007920323 | fastq.gz | 49.9 GB | ||
| EGAF00007920324 | fastq.gz | 40.2 GB | ||
| 38 Files (3.4 TB) | ||||