DNA whole-exome sequencing data from patients with metastatic basal cell carcinoma
Whole-exome sequencing data in fastq format of matched tumour and germline DNA from 8 patients with metastatic basal cell carcinoma. Samples are labeled as Primary, Local or Metastasis: Primary: Sample was obtained from primary tumour. Local: Sample was obtained from local recurrence of primary tumour. Metastasis: Sample was obtained from a metastatic site. Germline: Sample was obtained from normal adjacent tissue. DNA was isolated from FFPE tissue sections of the tumor biopsies using the AllPrep DNA/RNA FFPE Kit (Qiagen) and quality controls conducted using the Qubit fluorometer (Thermo Fisher Scientific). Library preparation was performed using the Agilent SureSelect Human All Exon v7 XTHS2 probes and sequenced on a NovaSeq 6000 S2 2x100bp
- 19 samples
- DAC: EGAC00001002614
- Technology: Illumina NovaSeq 6000
Terms and conditions, as established by the Melanoma Institute Australia, that users wishing to access this dataset must agree to meet.
Data-Use Agreement Please read the following statements and if you accept the terms of the agreement, return a signed copy to the Melanoma Institute Australia (MIA) Research Committee Secretary at research@melanoma.org.au Purpose: This agreement has been established to outline your requirements under Australian Law (Privacy Act) and to comply with HREC Approvals, Research Code of Conduct and MIA Research Policy. It is of utmost importance to protect the identities of cancer patients. Every effort has been made to exclude identifying information on individual patients. Certain demographic information - such as sex, race, etc. - has been included for research purposes. All research results must be presented or published in a manner that ensures that no individual can be identified. In order for the MIA to provide access to this Research Data, it is necessary that you agree to the following provisions. 1 The research data will be stored safely and securely. The lead researcher of the project at the collaborating institution is responsible for ensuring the Research Data is stored safely and securely. 2 I will not use - or permit others to use - the data in any way other than for statistical reporting and analysis for the approved research purposes. I must notify the Melanoma Institute Australia Research Committee (MIARC) Secretary if I discover that there has been any other use of the data. 3 I will not present or publish data in which an individual patient can be identified. 4 I will not attempt either to perform data linkage - or permit others to link - the data with individually identified records in another database without a Specific Human Ethics approval for the linkage. 5 I will not attempt to learn the identity of any patient whose disease data is contained in the supplied file(s). 6 If I inadvertently discover the identity of any patient, then (a) I will make no use of this knowledge, (b) I will notify the MIARC Secretary of the incident, and (c) I will inform no one else of the discovered identity. 7 I will not release - or permit others to release - the data - in full or in part - to any other person except with the written approval of the MIA Research Committee. In particular, all members of a research team who have access to the data must sign to this data-use agreement. 8 I will use appropriate safeguards to prevent use or disclosure of the information other than as provided for by this data-use agreement. If accessing the data from a centralized location on a time sharing computer system or any shared network drives, I will not share my logon name or password with any other individuals. I will also not allow any other individuals to use my computer account after I have logged on with my logon name and password. 9 If I leave the organisation and would like to continue to work on the research project, I will contact research@melanoma.org.au to find out if this is possible. I will nominate how long I need access for and my supervisor will need to approve this. 10 Any publications which include the Research data will acknowledge the source of data as the Melanoma Research Database at Melanoma Institute Australia. All publications should acknowledge the University of Sydney, Melanoma Institute Australia and the Sydney Local Health District as owners of the database. Suggested wording - We would like to thank the University of Sydney, Melanoma Institute Australia and the Sydney Local Health District for the data they have provided for this research. 11 At the conclusion of the project I will ensure that after having met any archiving requirements the data is destroyed. 12 My signature indicates that I agree to comply with the above stated provisions. AGREEMENT TO TERMS OF RELEASE OF CONFIDENTIAL MELANOMA INSTITUTE RESEARCH DATA I, ________________[full name], hereby agree to the terms and conditions relating to the release of the confidential Melanoma Institute Research data for use in: Project Title: _____________________________________________________________________ Signature _____________________________________________________________________ Date
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006148 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00006134234 | fastq.gz | 3.8 GB | ||
| EGAF00006134235 | fastq.gz | 3.9 GB | ||
| EGAF00006134236 | fastq.gz | 3.9 GB | ||
| EGAF00006134237 | fastq.gz | 4.0 GB | ||
| EGAF00006134238 | fastq.gz | 4.0 GB | ||
| EGAF00006134239 | fastq.gz | 4.1 GB | ||
| EGAF00006134240 | fastq.gz | 5.2 GB | ||
| EGAF00006134241 | fastq.gz | 5.3 GB | ||
| EGAF00006134242 | fastq.gz | 4.0 GB | ||
| EGAF00006134243 | fastq.gz | 4.1 GB | ||
| EGAF00006134244 | fastq.gz | 4.6 GB | ||
| EGAF00006134245 | fastq.gz | 4.8 GB | ||
| EGAF00006134246 | fastq.gz | 3.9 GB | ||
| EGAF00006134247 | fastq.gz | 4.0 GB | ||
| EGAF00006134248 | fastq.gz | 3.8 GB | ||
| EGAF00006134249 | fastq.gz | 3.8 GB | ||
| EGAF00006134250 | fastq.gz | 4.0 GB | ||
| EGAF00006134251 | fastq.gz | 4.1 GB | ||
| EGAF00006134252 | fastq.gz | 4.3 GB | ||
| EGAF00006134253 | fastq.gz | 4.4 GB | ||
| EGAF00006134254 | fastq.gz | 4.4 GB | ||
| EGAF00006134255 | fastq.gz | 4.5 GB | ||
| EGAF00006134256 | fastq.gz | 4.5 GB | ||
| EGAF00006134257 | fastq.gz | 4.7 GB | ||
| EGAF00006134258 | fastq.gz | 3.5 GB | ||
| EGAF00006134259 | fastq.gz | 3.6 GB | ||
| EGAF00006134260 | fastq.gz | 5.2 GB | ||
| EGAF00006134261 | fastq.gz | 5.4 GB | ||
| EGAF00006134262 | fastq.gz | 4.1 GB | ||
| EGAF00006134263 | fastq.gz | 4.2 GB | ||
| EGAF00006134264 | fastq.gz | 4.6 GB | ||
| EGAF00006134265 | fastq.gz | 4.8 GB | ||
| EGAF00006134266 | fastq.gz | 4.5 GB | ||
| EGAF00006134267 | fastq.gz | 4.6 GB | ||
| EGAF00006134268 | fastq.gz | 5.1 GB | ||
| EGAF00006134269 | fastq.gz | 5.3 GB | ||
| EGAF00006134270 | fastq.gz | 4.6 GB | ||
| EGAF00006134271 | fastq.gz | 4.8 GB | ||
| EGAF00006134272 | fastq.gz | 5.3 GB | ||
| EGAF00006134273 | fastq.gz | 5.4 GB | ||
| EGAF00006134274 | fastq.gz | 4.0 GB | ||
| EGAF00006134275 | fastq.gz | 4.0 GB | ||
| EGAF00006134276 | fastq.gz | 3.9 GB | ||
| EGAF00006134277 | fastq.gz | 4.1 GB | ||
| EGAF00006134278 | fastq.gz | 4.7 GB | ||
| EGAF00006134279 | fastq.gz | 4.9 GB | ||
| EGAF00006134280 | fastq.gz | 3.8 GB | ||
| EGAF00006134281 | fastq.gz | 3.9 GB | ||
| EGAF00006134282 | fastq.gz | 3.8 GB | ||
| EGAF00006134283 | fastq.gz | 3.9 GB | ||
| EGAF00006134284 | fastq.gz | 4.6 GB | ||
| EGAF00006134285 | fastq.gz | 4.8 GB | ||
| EGAF00006134286 | fastq.gz | 4.5 GB | ||
| EGAF00006134287 | fastq.gz | 4.7 GB | ||
| EGAF00006134288 | fastq.gz | 3.9 GB | ||
| EGAF00006134289 | fastq.gz | 4.0 GB | ||
| EGAF00006134290 | fastq.gz | 4.4 GB | ||
| EGAF00006134291 | fastq.gz | 4.5 GB | ||
| EGAF00006134292 | fastq.gz | 4.4 GB | ||
| EGAF00006134293 | fastq.gz | 4.5 GB | ||
| EGAF00006134294 | fastq.gz | 4.5 GB | ||
| EGAF00006134295 | fastq.gz | 4.6 GB | ||
| EGAF00006134296 | fastq.gz | 3.5 GB | ||
| EGAF00006134297 | fastq.gz | 3.6 GB | ||
| EGAF00006134298 | fastq.gz | 4.7 GB | ||
| EGAF00006134299 | fastq.gz | 4.9 GB | ||
| EGAF00006134300 | fastq.gz | 3.9 GB | ||
| EGAF00006134301 | fastq.gz | 4.0 GB | ||
| EGAF00006134302 | fastq.gz | 4.3 GB | ||
| EGAF00006134303 | fastq.gz | 4.4 GB | ||
| EGAF00006134304 | fastq.gz | 4.4 GB | ||
| EGAF00006134305 | fastq.gz | 4.5 GB | ||
| EGAF00006134306 | fastq.gz | 4.6 GB | ||
| EGAF00006134307 | fastq.gz | 4.8 GB | ||
| EGAF00006134308 | fastq.gz | 4.7 GB | ||
| EGAF00006134309 | fastq.gz | 4.8 GB | ||
| 76 Files (333.0 GB) | ||||