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Lung cancer and non-cancerous plasma cfDNA samples

The dataset contains 90 lung cancer and 5 non-cancerous lung lesion plasma cfDNA samples collected in EDTA blood collection tubes. Shallow WGS was performed on an Illumina Novaseq S4 PE150bp. Samples are provided as raw reads without any prior processing.

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DAP for FMseq_EGA_004

Data Access Policy Form – Mouliere Lab, Vrije University Medical Center Amsterdam These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. The current text is just the first part of the DAP. Please download and fill in the full version from the link provided! Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: The Amsterdam University Medical Center, location VUmc, De Boelelaan 1118, 1081 HZ Amsterdam; represented by Florent C. Mouliere, and contactable by email at f.mouliere@amsterdamumc.nl or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number or hospital number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of the Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree to acknowledge in any Publication and Communications based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. You recognize that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organizational measures against the unauthorized or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A You acknowledge and agree that the Data is pseudonymized Data and that You will become the Data Controller on receipt of such Data. You will only process the Data for the purpose of carrying out the Project. You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. You agree that You shall not analyze or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data. Schedule B For schedule B please download the full version of this DAP from the link provided.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006131805 1647951360978 4.2 GB
EGAF00006131806 1647937320680 4.3 GB
EGAF00006131807 1647937501063 3.4 GB
EGAF00006131808 1647939676661 3.5 GB
EGAF00006131809 1647937629037 3.8 GB
EGAF00006131810 1647937320680 4.0 GB
EGAF00006131811 1647951600362 3.1 GB
EGAF00006131812 1647939780276 3.2 GB
EGAF00006131813 1647938174277 5.2 GB
EGAF00006131814 1647940980691 5.3 GB
EGAF00006131815 1647951420390 3.8 GB
EGAF00006131816 1647951301043 3.9 GB
EGAF00006131817 1647938520998 7.3 GB
EGAF00006131818 1647937987744 7.4 GB
EGAF00006131819 1647951960458 12.6 GB
EGAF00006131820 1647941820698 13.2 GB
EGAF00006131821 1647937924239 3.8 GB
EGAF00006131822 1647937924239 3.9 GB
EGAF00006131823 1647940020588 2.5 GB
EGAF00006131824 1647937140190 2.6 GB
EGAF00006131825 1647951360978 4.0 GB
EGAF00006131826 1647941160072 4.2 GB
EGAF00006131827 1647937629037 5.3 GB
EGAF00006131828 1647938461245 5.5 GB
EGAF00006131829 1647936781484 2.4 GB
EGAF00006131830 1647951240502 2.5 GB
EGAF00006131831 1647940980691 3.4 GB
EGAF00006131832 1647939960307 3.5 GB
EGAF00006131833 1647938881082 13.7 GB
EGAF00006131834 1647938702570 14.2 GB
EGAF00006131835 1647939000816 3.6 GB
EGAF00006131836 1647940620180 3.7 GB
EGAF00006131837 1647951240503 3.8 GB
EGAF00006131838 1647951540143 4.0 GB
EGAF00006131839 1647951540143 5.3 GB
EGAF00006131840 1647937682394 5.5 GB
EGAF00006131841 1647936781484 2.5 GB
EGAF00006131842 1647936962387 2.5 GB
EGAF00006131843 1647937140190 3.8 GB
EGAF00006131844 1647937382975 4.0 GB
EGAF00006131845 1647936962387 2.1 GB
EGAF00006131846 1647936781484 2.2 GB
EGAF00006131847 1647937924239 6.3 GB
EGAF00006131848 1647937443053 6.6 GB
EGAF00006131849 1647939900571 4.5 GB
EGAF00006131850 1647937629037 4.7 GB
EGAF00006131851 1647939601766 3.2 GB
EGAF00006131852 1647939676662 3.3 GB
EGAF00006131853 1647937682394 4.5 GB
EGAF00006131854 1647940800256 4.7 GB
EGAF00006131855 1647940200463 3.8 GB
EGAF00006131856 1647951780065 3.9 GB
EGAF00006131857 1647939300316 2.2 GB
EGAF00006131858 1647937320680 2.3 GB
EGAF00006131859 1647940740320 5.1 GB
EGAF00006131860 1647938461245 5.3 GB
EGAF00006131861 1647938041859 3.6 GB
EGAF00006131862 1647937682394 3.7 GB
EGAF00006131863 1647938295291 9.7 GB
EGAF00006131864 1647952500051 10.2 GB
EGAF00006131865 1647940860327 4.9 GB
EGAF00006131866 1647937443053 5.1 GB
EGAF00006131867 1647939542759 761.3 MB
EGAF00006131868 1647951120453 812.6 MB
EGAF00006131869 1647940500242 3.9 GB
EGAF00006131870 1647940560234 4.1 GB
EGAF00006131871 1647941040114 3.7 GB
EGAF00006131872 1647940440168 3.9 GB
EGAF00006131873 1647939960307 3.1 GB
EGAF00006131874 1647940082773 3.2 GB
EGAF00006131875 1647937443053 1.9 GB
EGAF00006131876 1647937200419 1.9 GB
EGAF00006131877 1647938112327 4.4 GB
EGAF00006131878 1647951420390 4.5 GB
EGAF00006131879 1647952260195 11.8 GB
EGAF00006131880 1647938826075 12.3 GB
EGAF00006131881 1647937082897 2.2 GB
EGAF00006131882 1647937443053 2.3 GB
EGAF00006131883 1647937382976 3.0 GB
EGAF00006131884 1647937801831 3.2 GB
EGAF00006131885 1647937200419 4.4 GB
EGAF00006131886 1647938174277 4.5 GB
EGAF00006131887 1647940082773 2.6 GB
EGAF00006131888 1647951840037 2.7 GB
EGAF00006131889 1647940082773 5.1 GB
EGAF00006131890 1647940800256 5.3 GB
EGAF00006131891 1647939420204 2.5 GB
EGAF00006131892 1647937629037 2.6 GB
EGAF00006131893 1647939361132 2.4 GB
EGAF00006131894 1647940200463 2.5 GB
EGAF00006131895 1647937200419 4.2 GB
EGAF00006131896 1647939900571 4.4 GB
EGAF00006131897 1647951780065 2.3 GB
EGAF00006131898 1647951720729 2.4 GB
EGAF00006131899 1647937924239 3.6 GB
EGAF00006131900 1647941040114 3.8 GB
EGAF00006131901 1647937501063 4.5 GB
EGAF00006131902 1647937501063 4.7 GB
EGAF00006131903 1647951240502 3.0 GB
EGAF00006131904 1647937862998 3.1 GB
EGAF00006131905 1647937443053 2.5 GB
EGAF00006131906 1647951301043 2.6 GB
EGAF00006131907 1647951600362 2.4 GB
EGAF00006131908 1647951600362 2.5 GB
EGAF00006131909 1647951660110 2.9 GB
EGAF00006131910 1647937021555 3.0 GB
EGAF00006131911 1647939676661 3.5 GB
EGAF00006131912 1647940020588 3.6 GB
EGAF00006131913 1647951360978 4.2 GB
EGAF00006131914 1647937743292 4.4 GB
EGAF00006131915 1647937924239 4.0 GB
EGAF00006131916 1647951480293 4.1 GB
EGAF00006131917 1647951301043 3.7 GB
EGAF00006131918 1647937567408 3.8 GB
EGAF00006131919 1647937501063 5.2 GB
EGAF00006131920 1647937021555 5.5 GB
EGAF00006131921 1647938226210 4.4 GB
EGAF00006131922 1647937567408 4.6 GB
EGAF00006131923 1647937743292 3.7 GB
EGAF00006131924 1647938760462 3.8 GB
EGAF00006131925 1647939601766 3.5 GB
EGAF00006131926 1647951301043 3.7 GB
EGAF00006131927 1647939900571 3.9 GB
EGAF00006131928 1647951360978 4.0 GB
EGAF00006131929 1647938226210 8.9 GB
EGAF00006131930 1647938295291 9.2 GB
EGAF00006131931 1647951780065 3.3 GB
EGAF00006131932 1647937082897 3.4 GB
EGAF00006131933 1647937924239 4.3 GB
EGAF00006131934 1647940320853 4.5 GB
EGAF00006131935 1647951600362 2.3 GB
EGAF00006131936 1647936781484 2.4 GB
EGAF00006131937 1647940620180 3.8 GB
EGAF00006131938 1647937987744 4.0 GB
EGAF00006131939 1647939060773 3.8 GB
EGAF00006131940 1647951900462 4.0 GB
EGAF00006131941 1647938702570 3.6 GB
EGAF00006131942 1647937924239 3.7 GB
EGAF00006131943 1647951900462 5.2 GB
EGAF00006131944 1647937743292 5.4 GB
EGAF00006131945 1647937200419 4.5 GB
EGAF00006131946 1647951360978 4.6 GB
EGAF00006131947 1647951180449 2.3 GB
EGAF00006131948 1647951301043 2.4 GB
EGAF00006131949 1647936962387 3.2 GB
EGAF00006131950 1647951301043 3.3 GB
EGAF00006131951 1647940620180 3.3 GB
EGAF00006131952 1647951780065 3.4 GB
EGAF00006131953 1647938580552 2.8 GB
EGAF00006131954 1647937082897 2.9 GB
EGAF00006131955 1647951360978 3.1 GB
EGAF00006131956 1647937082897 3.2 GB
EGAF00006131957 1647940260351 5.8 GB
EGAF00006131958 1647937382975 6.1 GB
EGAF00006131959 1647939420204 11.1 GB
EGAF00006131960 1647938760462 11.5 GB
EGAF00006131961 1647937260117 4.9 GB
EGAF00006131962 1647937801831 5.2 GB
EGAF00006131963 1647937320680 3.1 GB
EGAF00006131964 1647951600362 3.2 GB
EGAF00006131965 1647940860327 5.9 GB
EGAF00006131966 1647937862998 6.0 GB
EGAF00006131967 1647938520998 6.5 GB
EGAF00006131968 1647941040114 6.7 GB
EGAF00006131969 1647937382975 3.4 GB
EGAF00006131970 1647938642817 3.5 GB
EGAF00006131971 1647951301043 4.0 GB
EGAF00006131972 1647939900571 4.3 GB
EGAF00006131973 1647951660110 3.0 GB
EGAF00006131974 1647940920261 3.1 GB
EGAF00006131975 1647951240502 3.0 GB
EGAF00006131976 1647937862998 3.1 GB
EGAF00006131977 1647939123451 2.5 GB
EGAF00006131978 1647939542759 2.6 GB
EGAF00006131979 1647937862998 6.7 GB
EGAF00006131980 1647937082897 6.9 GB
EGAF00006131981 1649334121300 2.2 GB
EGAF00006131983 1647939542759 4.8 GB
EGAF00006131984 1647951480293 5.0 GB
EGAF00006131985 1647939676661 3.4 GB
EGAF00006131986 1647939960307 3.5 GB
EGAF00006131987 1647937082897 3.3 GB
EGAF00006131988 1647937382975 3.4 GB
EGAF00006131989 1647937320680 5.0 GB
EGAF00006131990 1647938226210 5.2 GB
EGAF00006131991 1647951600362 2.7 GB
EGAF00006131992 1647951301044 2.8 GB
EGAF00006131993 1647937567408 8.0 GB
EGAF00006131994 1647940020588 8.3 GB
189 Files (822.0 GB)