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sWGS of dried blood spots (cfDNA/ctDNA)

This dataset contains paired-end fastq sequencing files (n=212) from shallow WGS of 106 dried blood spot (DBS) samples, containing 91 DBS collected from OV04 ovarian cancer PDX mice, 10 DBS collected from healthy non-tumour bearing NSG mice, and 5 DBS generated from whole blood samples from 4 OV04 ovarian cancer patients.

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Data Access policy - Brenton and Rosenfeld Labs

Data Access Request Form – Brenton/Rosenfeld Lab, CRUK-CI, University of Cambridge, UK These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE of The Old Schools, Trinity Lane, Cambridge CB2 1TN, United Kingdom and the Cambridge University Hospitals NHS Foundation Trust of Addenbrooke’s Hospital, Cambridge, CB2 0QQ; represented by staff of the Brenton and Rosenfeld Groups at the Cancer Research UK Cambridge Institute, and contactable by email at james.brenton@cruk.cam.ac.uk and nitzan.rosenfeld@cruk.cam.ac.uk or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number, hospital number or NHS number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. 2. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. 3. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. 4. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 5. You agree to acknowledge in any Publication based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. 6. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 7. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. 8. You recognise that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. 9. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 10. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 11. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. 12. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organisational measures against the unauthorised or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A 1.1 You acknowledge and agree that the Data is pseudonymised Data and that You will become the Data Controller on receipt of such Data. 1.2 You will only process the Data for the purpose of carrying out the Project. 1.3 You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. 1.4 The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. 1.5 You agree that You shall not analyse or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. 1.6 You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data.  

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006130548 1647608880626 234.2 MB
EGAF00006130549 1647609240611 248.5 MB
EGAF00006130550 1647609001259 739.2 MB
EGAF00006130551 1647609001260 816.8 MB
EGAF00006130552 1647608823555 651.0 MB
EGAF00006130553 1647609060459 691.6 MB
EGAF00006130554 1647608823555 464.5 MB
EGAF00006130555 1647609001259 488.4 MB
EGAF00006130556 1647608823555 458.8 MB
EGAF00006130557 1647608940478 491.7 MB
EGAF00006130558 1647608940478 567.6 MB
EGAF00006130559 1647608940478 609.8 MB
EGAF00006130560 1647608940478 514.7 MB
EGAF00006130561 1647608880626 533.6 MB
EGAF00006130562 1647609001259 684.2 MB
EGAF00006130563 1647609120381 729.5 MB
EGAF00006130564 1647608880626 754.3 MB
EGAF00006130565 1647609240611 818.3 MB
EGAF00006130566 1647609001259 1.3 GB
EGAF00006130567 1647609240611 1.3 GB
EGAF00006130568 1647609001258 253.1 MB
EGAF00006130569 1647608762279 282.2 MB
EGAF00006130570 1647609001258 1.0 GB
EGAF00006130571 1647609304494 1.1 GB
EGAF00006130572 1647609188263 1.0 GB
EGAF00006130573 1647608940478 1.1 GB
EGAF00006130574 1647608823555 333.6 MB
EGAF00006130575 1647608823555 370.6 MB
EGAF00006130576 1647608880626 731.0 MB
EGAF00006130577 1647608762279 758.6 MB
EGAF00006130578 1647609120381 778.7 MB
EGAF00006130579 1647609304494 826.5 MB
EGAF00006130580 1647609240611 2.3 GB
EGAF00006130581 1647609480177 2.3 GB
EGAF00006130582 1647609304494 925.7 MB
EGAF00006130583 1647608880626 946.9 MB
EGAF00006130584 1647609304494 1.0 GB
EGAF00006130585 1647609120381 999.8 MB
EGAF00006130586 1647609360026 1.4 GB
EGAF00006130587 1647609360026 1.5 GB
EGAF00006130588 1647608940478 1.2 GB
EGAF00006130589 1647609188262 1.2 GB
EGAF00006130590 1647609060459 1.5 GB
EGAF00006130591 1647609304494 1.6 GB
EGAF00006130592 1647608823555 274.2 MB
EGAF00006130593 1647608940478 298.5 MB
EGAF00006130594 1647609001259 250.6 MB
EGAF00006130595 1647608940478 278.0 MB
EGAF00006130596 1651583533431 298.1 MB
EGAF00006130597 1647608940478 326.2 MB
EGAF00006130598 1647609001259 869.9 MB
EGAF00006130599 1647609060459 971.9 MB
EGAF00006130600 1647609240611 635.9 MB
EGAF00006130601 1647608940477 691.4 MB
EGAF00006130602 1647608880626 377.9 MB
EGAF00006130603 1647609188262 396.9 MB
EGAF00006130604 1647608880626 645.1 MB
EGAF00006130605 1647609001259 696.3 MB
EGAF00006130606 1647608823555 243.6 MB
EGAF00006130607 1647609060459 266.3 MB
EGAF00006130608 1647608762279 498.9 MB
EGAF00006130609 1647609001259 522.2 MB
EGAF00006130610 1647609420029 2.2 GB
EGAF00006130611 1647609360025 2.2 GB
EGAF00006130612 1647609360026 4.0 GB
EGAF00006130613 1647609420029 3.9 GB
EGAF00006130614 1647609304494 915.9 MB
EGAF00006130615 1647609304494 1.0 GB
EGAF00006130616 1647609188262 1.4 GB
EGAF00006130617 1647609001258 1.5 GB
EGAF00006130618 1647609060459 670.9 MB
EGAF00006130619 1647609120381 717.1 MB
EGAF00006130620 1647609060459 869.1 MB
EGAF00006130621 1647609188262 914.0 MB
EGAF00006130622 1647609120381 817.1 MB
EGAF00006130623 1647609120381 876.4 MB
EGAF00006130624 1647608880626 830.9 MB
EGAF00006130625 1647609304494 888.1 MB
EGAF00006130626 1647609001258 1.3 GB
EGAF00006130627 1647609240611 1.3 GB
EGAF00006130628 1647609360026 1.8 GB
EGAF00006130629 1647609188262 1.8 GB
EGAF00006130630 1647609188262 1.4 GB
EGAF00006130631 1647609120381 1.4 GB
EGAF00006130632 1647608823555 254.0 MB
EGAF00006130633 1647609001258 269.9 MB
EGAF00006130634 1647608940477 318.9 MB
EGAF00006130635 1647609060459 356.8 MB
EGAF00006130636 1647609060459 680.7 MB
EGAF00006130637 1647609001258 685.0 MB
EGAF00006130638 1647608823555 256.8 MB
EGAF00006130639 1647609188262 285.6 MB
EGAF00006130640 1647608940477 333.8 MB
EGAF00006130641 1647609001258 356.9 MB
EGAF00006130642 1647608823555 585.7 MB
EGAF00006130643 1647609060459 594.8 MB
EGAF00006130644 1647609060459 309.9 MB
EGAF00006130645 1647608880626 330.1 MB
EGAF00006130646 1647608880626 281.2 MB
EGAF00006130647 1647608880626 303.0 MB
EGAF00006130648 1647608823555 235.2 MB
EGAF00006130649 1647608880626 254.3 MB
EGAF00006130650 1647609120381 754.9 MB
EGAF00006130651 1647609120381 799.1 MB
EGAF00006130652 1647619920032 626.6 MB
EGAF00006130653 1647608823555 666.3 MB
EGAF00006130654 1647609240611 584.5 MB
EGAF00006130655 1647608880626 623.2 MB
EGAF00006130656 1647608762279 675.9 MB
EGAF00006130657 1647608823555 726.1 MB
EGAF00006130658 1647609304494 647.2 MB
EGAF00006130659 1647608762279 713.4 MB
EGAF00006130660 1647608940477 968.9 MB
EGAF00006130661 1647608823555 954.6 MB
EGAF00006130662 1647608700754 311.5 MB
EGAF00006130663 1647609001258 339.2 MB
EGAF00006130664 1647608823555 327.7 MB
EGAF00006130665 1647608762279 358.3 MB
EGAF00006130666 1647608940477 1.5 GB
EGAF00006130667 1647609188262 1.5 GB
EGAF00006130668 1647608823555 1.1 GB
EGAF00006130669 1647609120381 1.2 GB
EGAF00006130670 1647609060459 525.3 MB
EGAF00006130671 1647608700754 536.7 MB
EGAF00006130672 1647608823555 296.0 MB
EGAF00006130673 1647608762279 328.2 MB
EGAF00006130674 1647608823555 838.8 MB
EGAF00006130675 1647609001258 894.6 MB
EGAF00006130676 1647609060459 618.1 MB
EGAF00006130677 1647609060459 662.2 MB
EGAF00006130678 1647608700752 475.8 MB
EGAF00006130679 1647608700752 507.8 MB
EGAF00006130680 1647608700752 607.8 MB
EGAF00006130681 1647608762279 655.8 MB
EGAF00006130682 1647608762279 864.4 MB
EGAF00006130683 1647608823555 936.1 MB
EGAF00006130684 1647609120381 930.1 MB
EGAF00006130685 1647608762279 984.1 MB
EGAF00006130686 1647609120381 968.5 MB
EGAF00006130687 1647608762279 1.0 GB
EGAF00006130688 1647608762279 1.0 GB
EGAF00006130689 1647608700752 1.1 GB
EGAF00006130690 1647608762279 225.9 MB
EGAF00006130691 1647608940478 246.0 MB
EGAF00006130692 1647608700752 277.8 MB
EGAF00006130693 1647608700752 300.0 MB
EGAF00006130694 1647608700752 347.4 MB
EGAF00006130695 1647608823555 367.7 MB
EGAF00006130696 1647608700752 637.9 MB
EGAF00006130697 1647608880626 679.7 MB
EGAF00006130698 1647608700752 267.6 MB
EGAF00006130699 1647608700754 278.2 MB
EGAF00006130700 1651583594303 288.0 MB
EGAF00006130701 1647608700752 310.7 MB
EGAF00006130702 1647609001258 476.0 MB
EGAF00006130703 1647609188262 506.3 MB
EGAF00006130704 1647608880626 692.0 MB
EGAF00006130705 1647609001258 732.1 MB
EGAF00006130706 1647609060459 1.0 GB
EGAF00006130707 1647609060459 1.2 GB
EGAF00006130708 1647609120381 1.2 GB
EGAF00006130709 1647609060459 1.2 GB
EGAF00006130710 1647608880626 660.8 MB
EGAF00006130711 1647608823555 724.2 MB
EGAF00006130712 1647608823555 782.0 MB
EGAF00006130713 1647609060459 831.7 MB
EGAF00006130714 1647608700752 232.6 MB
EGAF00006130715 1647608880626 248.8 MB
EGAF00006130716 1647609240611 579.7 MB
EGAF00006130717 1647609001258 613.3 MB
EGAF00006130718 1647608823555 475.1 MB
EGAF00006130719 1647608823555 507.7 MB
EGAF00006130720 1647608823556 732.1 MB
EGAF00006130721 1647609120381 771.9 MB
EGAF00006130722 1647608940478 734.3 MB
EGAF00006130723 1647609120381 773.9 MB
EGAF00006130724 1647608823555 471.5 MB
EGAF00006130725 1647608762279 506.7 MB
EGAF00006130726 1647608940477 903.7 MB
EGAF00006130727 1647609001258 981.4 MB
EGAF00006130728 1647609188262 860.9 MB
EGAF00006130729 1647608823555 909.1 MB
EGAF00006130730 1647609001258 983.8 MB
EGAF00006130731 1647609240611 1.1 GB
EGAF00006130732 1647608880626 715.5 MB
EGAF00006130733 1647609060459 755.2 MB
EGAF00006130734 1647608880626 714.7 MB
EGAF00006130735 1647609060459 795.5 MB
EGAF00006130736 1647609304494 791.4 MB
EGAF00006130737 1647608880626 872.0 MB
EGAF00006130738 1647609304494 750.5 MB
EGAF00006130739 1647609060459 813.3 MB
EGAF00006130740 1647609304494 812.2 MB
EGAF00006130741 1647609188262 903.9 MB
EGAF00006130742 1647608880626 698.5 MB
EGAF00006130743 1647608823555 738.0 MB
EGAF00006130744 1647609188262 944.3 MB
EGAF00006130745 1647609001258 1.0 GB
EGAF00006130746 1647608823555 521.7 MB
EGAF00006130747 1647609001258 551.6 MB
EGAF00006130748 1647609120381 1.7 GB
EGAF00006130749 1647609188262 1.8 GB
EGAF00006130750 1647608880626 330.2 MB
EGAF00006130751 1647608823555 341.7 MB
EGAF00006130752 1647609120381 285.8 MB
EGAF00006130753 1647609240611 299.5 MB
EGAF00006130754 1647609240611 826.4 MB
EGAF00006130755 1647609060459 880.5 MB
EGAF00006130756 1647608940477 364.8 MB
EGAF00006130757 1647608940477 395.0 MB
EGAF00006130758 1647609304494 647.4 MB
EGAF00006130759 1647609001258 683.7 MB
212 Files (164.2 GB)