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PPGL WES dataset

Dataset includes fastq files for WES experiments for tumor samples of PPGL patients. Paired end reads fastq files are available for 87 different samples

Request Access

Policy for access to WES and RNA-Seq data of pheochromocytomas and paragangliomas

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom HECG-BU grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: HECG-BU and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. HECG-BU: Hereditary Endocrine Cancer Group, Human Cancer Genetics Program, Spanish National Cancer Research Centre (CNIO), Madrid, Spain and Bioinformatics Unit, Structural Biology Program, Spanish National Cancer Research Centre (CNIO), Madrid, Spain 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify HECG-BU within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify HECG-BU prior to any significant changes to the protocol for the Project. 14. The User Institution will notify HECG-BU as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. HECG-BU may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than HECG-BU. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005809834 1645192145645 3.3 GB
EGAF00005809835 1645230065251 3.4 GB
EGAF00005809836 1645228684375 2.0 GB
EGAF00005809837 1645227754553 2.0 GB
EGAF00005809838 1645229497170 3.3 GB
EGAF00005809839 1645192145645 3.4 GB
EGAF00005809840 1645192206446 5.0 GB
EGAF00005809841 1645192681175 5.2 GB
EGAF00005809842 1645230600892 4.2 GB
EGAF00005809843 1645229769930 4.3 GB
EGAF00005809844 1645191480628 3.2 GB
EGAF00005809845 1645191107467 3.2 GB
EGAF00005809846 1645228343632 2.7 GB
EGAF00005809847 1645230542418 2.7 GB
EGAF00005809848 1645229894683 3.2 GB
EGAF00005809849 1645191840903 3.3 GB
EGAF00005809850 1645190340219 3.4 GB
EGAF00005809851 1645191840903 3.4 GB
EGAF00005809852 1645230146070 3.1 GB
EGAF00005809853 1645230205574 3.1 GB
EGAF00005809854 1645229823416 1.8 GB
EGAF00005809855 1645227669376 1.8 GB
EGAF00005809856 1645191005927 4.0 GB
EGAF00005809857 1645191180476 4.2 GB
EGAF00005809858 1645230245241 2.7 GB
EGAF00005809859 1645191005927 2.7 GB
EGAF00005809860 1645191121136 3.3 GB
EGAF00005809861 1645191107467 3.4 GB
EGAF00005809862 1645192441004 3.7 GB
EGAF00005809863 1645191663781 3.8 GB
EGAF00005809864 1645191420642 2.9 GB
EGAF00005809865 1645190400307 3.1 GB
EGAF00005809866 1645190280376 1.8 GB
EGAF00005809867 1645190584035 1.8 GB
EGAF00005809868 1645191720929 4.3 GB
EGAF00005809869 1645191663781 4.4 GB
EGAF00005809870 1645190700492 3.1 GB
EGAF00005809871 1645190820402 3.1 GB
EGAF00005809872 1645190280376 3.0 GB
EGAF00005809873 1645191540753 3.0 GB
EGAF00005809874 1645191540753 13.1 GB
EGAF00005809875 1645232750946 13.2 GB
EGAF00005809876 1645190760883 3.6 GB
EGAF00005809877 1645191360592 3.8 GB
EGAF00005809878 1645229894683 5.0 GB
EGAF00005809879 1645190584035 5.1 GB
EGAF00005809880 1645191121136 2.4 GB
EGAF00005809881 1645191600442 2.5 GB
EGAF00005809882 1645191180476 3.2 GB
EGAF00005809883 1645191720929 3.2 GB
EGAF00005809884 1645229733766 4.1 GB
EGAF00005809885 1645191480628 4.2 GB
EGAF00005809886 1645190584035 4.2 GB
EGAF00005809887 1645192500751 4.3 GB
EGAF00005809888 1645192620589 8.3 GB
EGAF00005809889 1645192020698 8.4 GB
EGAF00005809890 1645193760860 10.8 GB
EGAF00005809891 1645193055394 11.0 GB
EGAF00005809892 1645192206446 12.5 GB
EGAF00005809893 1645233123528 12.6 GB
EGAF00005809894 1645232350858 7.9 GB
EGAF00005809895 1645231501960 8.3 GB
EGAF00005809896 1645231921390 8.1 GB
EGAF00005809897 1645191107467 8.3 GB
EGAF00005809898 1645192500751 6.9 GB
EGAF00005809899 1645192740828 7.3 GB
EGAF00005809900 1645233720199 3.7 GB
EGAF00005809901 1645230245241 3.8 GB
EGAF00005809902 1645235100043 15.4 GB
EGAF00005809903 1645234380426 16.2 GB
EGAF00005809904 1645231560541 9.7 GB
EGAF00005809905 1645234380426 10.0 GB
EGAF00005809906 1645193220677 11.4 GB
EGAF00005809907 1645194540073 11.6 GB
EGAF00005809908 1645193055394 7.1 GB
EGAF00005809909 1645193702193 7.2 GB
EGAF00005809910 1645232286221 5.9 GB
EGAF00005809911 1645231086633 6.5 GB
EGAF00005809912 1645194840100 11.7 GB
EGAF00005809913 1645232220811 12.2 GB
EGAF00005809914 1645230975479 4.4 GB
EGAF00005809915 1645191780442 4.6 GB
EGAF00005809916 1645234740054 10.2 GB
EGAF00005809917 1645232750946 10.5 GB
EGAF00005809918 1645230858527 3.7 GB
EGAF00005809919 1645228149637 3.8 GB
EGAF00005809920 1645234080936 10.2 GB
EGAF00005809921 1645193100320 10.4 GB
EGAF00005809922 1645233301999 7.8 GB
EGAF00005809923 1645234140671 8.8 GB
EGAF00005809924 1645234203542 10.8 GB
EGAF00005809925 1645231501960 11.1 GB
EGAF00005809926 1645193640129 8.4 GB
EGAF00005809927 1645232750946 8.6 GB
EGAF00005809928 1645235520024 16.2 GB
EGAF00005809929 1645195320199 16.7 GB
EGAF00005809930 1645230975479 10.3 GB
EGAF00005809931 1645234140671 10.6 GB
EGAF00005809932 1645233180145 10.9 GB
EGAF00005809933 1645191840903 11.1 GB
EGAF00005809934 1645191107467 4.0 GB
EGAF00005809935 1645228503701 4.2 GB
EGAF00005809936 1645194720387 9.5 GB
EGAF00005809937 1645233960971 9.8 GB
EGAF00005809938 1645232405242 8.5 GB
EGAF00005809939 1645230441060 8.8 GB
EGAF00005809940 1645230205574 6.5 GB
EGAF00005809941 1645231742050 6.7 GB
EGAF00005809942 1645231621259 7.4 GB
EGAF00005809943 1645193881055 8.2 GB
EGAF00005809944 1645233060260 14.8 GB
EGAF00005809945 1645235220246 15.1 GB
EGAF00005809946 1645193400133 12.5 GB
EGAF00005809947 1645193220677 12.8 GB
EGAF00005809948 1645191900763 4.5 GB
EGAF00005809949 1645230542418 4.7 GB
EGAF00005809950 1645231261849 8.4 GB
EGAF00005809951 1645233361382 8.7 GB
EGAF00005809952 1645231621259 4.4 GB
EGAF00005809953 1645231742050 4.5 GB
EGAF00005809954 1645231980933 9.6 GB
EGAF00005809955 1645233420115 9.9 GB
EGAF00005809956 1645234740054 12.9 GB
EGAF00005809957 1645194120152 13.1 GB
EGAF00005809958 1645191540753 11.7 GB
EGAF00005809959 1645192740828 11.8 GB
EGAF00005809960 1645194000171 15.9 GB
EGAF00005809961 1645194960067 16.4 GB
EGAF00005809962 1645193702193 12.8 GB
EGAF00005809963 1645194240056 13.1 GB
EGAF00005809964 1645193881055 13.7 GB
EGAF00005809965 1645192145645 14.1 GB
EGAF00005809966 1645193055394 9.1 GB
EGAF00005809967 1645191420642 9.3 GB
EGAF00005809968 1645193055394 9.7 GB
EGAF00005809969 1645191480628 9.9 GB
EGAF00005809970 1645191840903 3.2 GB
EGAF00005809971 1645191960771 3.3 GB
EGAF00005809972 1645193161355 10.2 GB
EGAF00005809973 1645193055394 10.4 GB
EGAF00005809974 1645191720929 6.9 GB
EGAF00005809975 1645192145645 7.4 GB
EGAF00005809976 1645191840903 8.2 GB
EGAF00005809977 1645191240679 8.2 GB
EGAF00005809978 1645192206446 10.4 GB
EGAF00005809979 1645191420642 10.8 GB
EGAF00005809980 1645191960771 10.8 GB
EGAF00005809981 1645192145645 10.9 GB
EGAF00005809982 1645191420642 9.0 GB
EGAF00005809983 1645192681175 9.1 GB
EGAF00005809984 1645194120152 10.7 GB
EGAF00005809985 1645192681175 11.0 GB
EGAF00005809986 1645190700492 4.7 GB
EGAF00005809987 1645190820402 4.9 GB
EGAF00005809988 1645191107467 7.6 GB
EGAF00005809989 1645191540753 7.9 GB
EGAF00005809990 1645194300071 10.5 GB
EGAF00005809991 1645192740828 10.8 GB
EGAF00005809992 1645190820402 10.2 GB
EGAF00005809993 1645192020698 10.3 GB
EGAF00005809994 1645192681175 8.9 GB
EGAF00005809995 1645193702193 9.2 GB
EGAF00005809996 1645191005927 4.0 GB
EGAF00005809997 1645191107467 4.2 GB
EGAF00005809998 1645193055394 10.9 GB
EGAF00005809999 1645194060051 11.2 GB
EGAF00005810000 1645193055394 8.2 GB
EGAF00005810001 1645192441004 8.3 GB
EGAF00005810002 1645192145645 14.3 GB
EGAF00005810003 1645193881055 14.6 GB
EGAF00005810004 1645190700492 8.7 GB
EGAF00005810005 1645194120152 8.8 GB
EGAF00005810006 1645191240679 10.3 GB
EGAF00005810007 1645193055394 10.7 GB
EGAF00007735658 1668816949967 160.0 kB
EGAF00007735659 1668816949967 134.2 kB
EGAF00007735660 1668816949967 143.7 kB
EGAF00007735661 1668816949967 246.1 kB
EGAF00007735662 1668816949967 234.9 kB
EGAF00007735663 1668816949967 273.0 kB
EGAF00007735664 1668816949967 273.8 kB
EGAF00007735665 1668816949967 281.9 kB
EGAF00007735666 1668816949967 289.1 kB
EGAF00007735667 1668816949967 251.9 kB
EGAF00007735668 1668816949967 132.1 kB
EGAF00007735669 1668816949967 106.5 kB
EGAF00007735670 1668816949967 109.5 kB
EGAF00007735671 1668816949967 202.7 kB
EGAF00007735672 1668816949967 112.8 kB
EGAF00007735673 1668816949967 533.0 kB
EGAF00007735674 1668816949967 563.2 kB
EGAF00007735675 1668816949967 208.4 kB
EGAF00007735676 1668816949967 371.4 kB
EGAF00007735677 1668816949967 143.7 kB
EGAF00007735678 1668816949967 170.7 kB
EGAF00007735679 1668816949967 449.1 kB
EGAF00007735680 1668816949967 98.6 kB
EGAF00007735681 1668816949967 125.6 kB
EGAF00007735682 1668816949967 110.8 kB
EGAF00007735683 1668816949967 43.1 kB
EGAF00007735684 1668816949967 212.7 kB
EGAF00007735685 1668816949967 132.9 kB
EGAF00007735686 1668816949967 248.1 kB
EGAF00007735687 1668816949967 536.2 kB
EGAF00007735688 1668816949967 617.5 kB
EGAF00007735689 1668816949967 84.8 kB
EGAF00007735690 1668816949967 50.9 kB
EGAF00007735691 1668816949967 266.6 kB
EGAF00007735692 1668816949967 80.1 kB
EGAF00007735693 1668816949967 88.1 kB
EGAF00007735694 1668816949967 182.5 kB
EGAF00007735695 1668816949967 560.8 kB
EGAF00007735696 1668816949967 400.2 kB
EGAF00007735697 1668816949967 107.9 kB
EGAF00007735698 1668816949967 108.8 kB
EGAF00007735699 1668816949967 547.0 kB
EGAF00007735700 1668816949967 156.5 kB
EGAF00007735701 1668816949967 91.9 kB
EGAF00007735702 1668816949967 48.9 kB
EGAF00007735703 1668816949967 134.3 kB
EGAF00007735704 1668816949967 109.3 kB
EGAF00007735705 1668816949967 154.9 kB
EGAF00007735706 1668816949967 545.9 kB
EGAF00007735707 1668816949967 330.7 kB
EGAF00007735708 1668816949967 520.3 kB
EGAF00007735709 1668816949967 201.1 kB
EGAF00007735710 1668816949967 236.1 kB
EGAF00007735711 1668816949967 214.0 kB
EGAF00007735712 1668816949967 192.2 kB
EGAF00007735713 1668816949967 174.9 kB
EGAF00007735714 1668816949967 55.2 kB
EGAF00007735715 1668816949967 135.3 kB
EGAF00007735716 1668816949967 44.7 kB
EGAF00007735717 1668816949967 190.4 kB
EGAF00007735718 1668816949967 165.8 kB
EGAF00007735719 1668816949967 165.5 kB
EGAF00007735720 1668816949967 145.1 kB
EGAF00007735721 1668816949967 90.2 kB
EGAF00007735722 1668816949967 154.3 kB
EGAF00007735723 1668816949967 114.0 kB
EGAF00007735724 1668816949967 453.9 kB
EGAF00007735725 1668816949967 304.9 kB
EGAF00007735726 1668816949967 168.5 kB
EGAF00007735727 1668816949967 171.4 kB
EGAF00007735728 1668816949967 88.2 kB
EGAF00007735729 1668816949967 107.1 kB
EGAF00007735730 1668816949967 32.8 kB
EGAF00007735731 1668816949967 522.0 kB
EGAF00007735732 1668816949967 140.4 kB
EGAF00007735733 1668816949967 130.1 kB
EGAF00007735734 1668816949967 131.5 kB
EGAF00007735735 1668816949967 228.5 kB
EGAF00007735736 1668816949967 210.4 kB
EGAF00007735737 1668816949967 53.6 kB
EGAF00007735738 1668816949967 240.5 kB
EGAF00007735739 1668816949967 132.7 kB
EGAF00007735740 1668816949967 542.0 kB
EGAF00007735741 1668816949967 211.7 kB
EGAF00007735742 1668816949967 104.4 kB
EGAF00007735743 1668816949967 491.0 kB
EGAF00007735744 1668816949967 118.2 kB
EGAF00007735745 1668816949967 40.9 kB
EGAF00007735746 1668816949967 454.2 kB
EGAF00007735747 1668816949967 59.0 kB
EGAF00007735748 1668816949967 446.9 kB
EGAF00007735749 1668816949967 30.6 kB
EGAF00007735750 1668816949967 379.5 kB
EGAF00007735751 1668816949967 24.1 kB
EGAF00007735752 1668816949967 132.3 kB
EGAF00007735753 1668816949967 43.9 kB
EGAF00007735754 1668816949967 126.6 kB
EGAF00007735755 1668816949967 45.8 kB
EGAF00007735756 1668816949967 148.1 kB
EGAF00007735757 1668816949967 43.8 kB
EGAF00007735758 1668816949967 123.3 kB
EGAF00007735759 1668816949967 46.3 kB
EGAF00007735760 1668816949967 154.3 kB
EGAF00007735761 1668816949967 127.9 kB
EGAF00007735762 1668816949967 143.6 kB
EGAF00007735763 1668816949967 70.9 kB
EGAF00007735764 1668816949967 512.5 kB
EGAF00007735765 1668816949967 100.2 kB
EGAF00007735766 1668816949967 112.1 kB
EGAF00007735767 1668816949967 10.4 kB
EGAF00007735768 1668816949967 452.1 kB
EGAF00007735769 1668816949967 9.2 kB
EGAF00007735770 1668816949967 207.2 kB
EGAF00007735771 1668816949967 397.9 kB
EGAF00007735772 1668816949967 101.4 kB
EGAF00007735773 1668816949967 21.3 kB
EGAF00007735774 1668816949967 148.6 kB
EGAF00007735775 1668816949967 51.5 kB
EGAF00007735776 1668816949967 509.7 kB
EGAF00007735777 1668816949967 11.9 kB
EGAF00007735778 1668816949967 197.2 kB
EGAF00007735779 1668816949967 166.7 kB
EGAF00007735780 1668816949967 964.8 kB
EGAF00007735781 1668816949967 340.0 kB
EGAF00007735782 1668816949967 177.5 kB
EGAF00007735783 1668816949967 173.6 kB
EGAF00007735784 1668816949967 1.1 MB
EGAF00007735785 1668816949967 21.5 kB
EGAF00007735786 1668816949967 126.0 kB
EGAF00007735787 1668816949967 15.6 kB
EGAF00007735788 1668816949967 95.6 kB
EGAF00007735789 1668816949967 12.6 kB
EGAF00007735790 1668816949967 379.6 kB
EGAF00007735791 1668816949967 28.1 kB
EGAF00007735792 1668816949967 291.9 kB
EGAF00007735793 1668816949967 20.9 kB
EGAF00007735794 1668816949967 297.2 kB
EGAF00007735795 1668816949967 19.9 kB
EGAF00007735796 1668816949967 416.6 kB
EGAF00007735797 1668816949967 36.3 kB
EGAF00007735798 1668816949967 161.0 kB
EGAF00007735799 1668816949967 14.9 kB
EGAF00007735800 1668816949967 441.2 kB
EGAF00007735801 1668816949967 37.4 kB
EGAF00007735802 1668816949967 964.1 kB
EGAF00007735803 1668816949967 22.3 kB
EGAF00007735804 1668816949967 150.9 kB
EGAF00007735805 1668816949967 261.3 kB
EGAF00007735806 1668816949967 305.6 kB
EGAF00007735807 1668816949967 36.1 kB
EGAF00007735808 1668816949967 121.0 kB
EGAF00007735809 1668816949967 27.8 kB
EGAF00007735810 1668816949967 1.4 MB
EGAF00007735811 1668816949967 34.7 kB
EGAF00007735812 1668816949967 135.5 kB
EGAF00007735813 1668816949967 246.0 kB
EGAF00007735814 1668816949967 112.2 kB
EGAF00007735815 1668816949967 69.9 kB
EGAF00007735816 1668816949967 115.9 kB
EGAF00007735817 1668816949967 111.1 kB
EGAF00007735818 1668816949967 110.7 kB
EGAF00007735819 1668816949967 28.3 kB
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435 Files (1.3 TB)