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PYDP Papuan Y chromosome Diversity Panel

The PYDP dataset includes 26 bam files of Y chromosome sequences for Papua New Guinean individuals from different locations, extracted from whole genome sequences. DNA was extrated from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer.

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The PYDP data is released for research purposes only. The PYDP dataset includes 26 Y chromosome sequences extracted from whole genome sequences, in BAM format. These are from Papua New Guinean individuals from different locations. DNA was extracted from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer. Data access is granted by the PYDP Data Access committee and Data is released by European Genome-Phenome Archive.

Request to Papua New Guinea Y chromosome Diversity Data Access Committee All research projects must be approved by the PYDP DA committee. of ethical approvals, including documentation from a Papuan New Guinean ethics body, may be necessary for approval to be granted in some cases. In case of approval, signing the Data Access Policy Data released through European Genome-Phenome Archive. Data is to be used for research purposes only (described in Appendix II). Limitations in Appendix I Users must be formally affiliated with an officially recognized Institution. User cannot publicly release PYDP data. All rights of data release remain with the PYDP DA committee. Users can replicate existing studies published by PYDP. Users can conduct new demographic studies which do not compete with ongoing studies by PYDP. User cannot undertake studies of a medical or clinical nature without first seeking the approval PYDP DA committee. User cannot undertake studies for personal use, such as family history research, or perform this research for others. A moratorium on publication until a given date may be a condition of data access and use, primarily in cases where a study proposed by the User with ongoing studies by PYDP.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005803872 1645057249274 222.9 MB
EGAF00005803873 1645071961073 228.2 MB
EGAF00005803874 1645114436164 214.6 MB
EGAF00005803875 1645086000429 243.5 MB
EGAF00005803876 1645071177635 229.4 MB
EGAF00005803877 1645085762819 225.2 MB
EGAF00005803878 1645057131397 187.7 MB
EGAF00005803879 1645085599823 210.7 MB
EGAF00005803880 1645085821449 223.8 MB
EGAF00005803881 1645085821449 238.2 MB
EGAF00005803882 1645071177635 209.1 MB
EGAF00005803883 1645085599823 203.2 MB
EGAF00005803884 1645085821449 184.6 MB
EGAF00005803885 1645085460832 219.2 MB
EGAF00005803886 1645085821449 194.8 MB
EGAF00005803887 1645071177635 230.7 MB
EGAF00005803888 1645085896255 241.7 MB
EGAF00005803889 1645057131397 280.8 MB
EGAF00005803890 1645085529098 207.3 MB
EGAF00005803891 1645085599823 197.5 MB
EGAF00005803892 1645085460832 249.8 MB
EGAF00005803893 1645100385613 218.4 MB
EGAF00005803894 1645085821449 218.6 MB
EGAF00005803895 1645085896255 215.2 MB
EGAF00005803896 1645085896255 198.5 MB
EGAF00005803897 1645085896255 198.7 MB
26 Files (5.7 GB)