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59 CLPD-NK cases WGS & WTS data

For the cohort of 59 samples, we performed TruSeq DNA PCR-Free whole-genome sequencing library preparation according to manufacturer’s instructions (llumina, ILMN, San Diego, CA) on the automated NGS Star liquid handling platform (Hamilton, Bonaduz, Switzerland) followed by 2x150 bp paired-end sequencing on the HiSeqX or NovaSeq6000 (ILMN). An average coverage of >100x was achieved. For whole transcriptome analysis, the TruSeq Total Stranded RNA kit was used, starting with 250 ng of total RNA, to generate RNA libraries following the manufacturer’s recommendations (ILMN). 2x100bp paired-end reads were sequenced on the NovaSeq 6000 with a median of 50 mio. reads per sample (ILMN).

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MLL Munich Leukemia Laboratory Data Access Policy

MLL Munich Leukemia Laboratory Data Access Policy This policy describes how the Munich Leukemia Laboratory’s (MLL) Data Access Committee (DAC) will process requests for datasets stored in the European Genome-phenome Archive (EGA), when those datasets are made available by manuscripts that specifically reference this policy. Purpose 1. To ensure that applicants are qualified investigators, affiliated with an academic, non- profit, or government research organization. 2. To ensure that users of the data agree to comply with applicable laws, including requirements as outlined in any governing consent and appropriate ethical approvals, along with any restrictions for the data in question. General principles The DAC will consider applications for access to datasets stored in the EGA when authorized to do so in accordance with this policy. Access to de-identified and anonymized genomic sequence data will be granted to qualified researchers for appropriate use. A qualified researcher refers to a scientist who is employed, or legitimately affiliated with an academic, non-profit, or government research organization. The data will be deposited in the European Genome-Phenome Archive (EGA) and access will be by application to the MLL Data Access Committee (MLL DAC). Access to data will be granted to researchers for appropriate use and will be governed by the provisions in the associated informed consent for each cohort or collection, and the terms contained in the Data Access Agreement. The MLL DAC is concerned with access to de-identified anonymized genomic data generated by MLL, and associated phenotypic information published by MLL in reports of the analyses of each tumor subtype. The Committee will not consider requests for more detailed phenotypic information which is held by the principal investigators for the individual case collections. Access to this data should be by arrangement with the relevant principal investigator. Access is conditional upon availability of data and signed agreement by the researcher(s) and the responsible employing Institution to abide by policies related to publication, data disposal, ethical approval, confidentiality, and security. Application procedure Applicants requesting access to data from MLL will be asked to complete a basic application form and to agree to the terms and conditions laid out in the Data Access Agreement (DAA). Applications must be made by a Laboratory Head, Principal Investigator, or Departmental Chair. Both the applicant and an authorized representative of the applicant’s institution, e.g., the relevant Head of Department, Head of Institute, or equivalent, must sign the DAA. Successful applicants who have access to data will be designated "Registered Users" and will be issued a username and password by the EGA to enable access to the database. The MLL DAC will consider applications that include named collaborators, but each Institution must sign a separate Data Access Agreement. Should you wish to share the data with additional collaborators not previously approved, they must make a separate application for access to the Data. Applicants agree to use the data for the approved purpose and project described in the application; use of the data for a new purpose or project will require a new application and approval. Membership of Consortium Data Access Committee Prof. Dr. med. Dr. phil. Torsten Haferlach CEO MLL Munich Leukemia Laboratory and MHP Munich Hematology Practice; Head of the Cytomorphology Department, Munich Germany Prof. Dr. med. Claudia Haferlach Head of the Cytogenetics and Fluorescence In-situ Hybridization Department, MLL Munich Leukemia Laboratory, Munich, Germany Prof. Dr. med. Wolfgang Kern Head of the Immunophenotyping Department, MLL Munich Leukemia Laboratory, Munich Germany Dr. rer. nat. Manja Meggendorfer, MBA Head of Molecular genetics & Head of Research and development, MLL Munich Leukemia Laboratory, Munich Germany Assessment Criteria Each application will be assessed to determine if: • it has been submitted by a qualified researcher or researchers, embedded in a recognized research institution that can provide institutional responsibility for appropriate research governance • the project described constitutes “biomedical research” in the context of the consent process, and is likely to be understood as such by the sample donors • it does not breach any of the ethical permissions or restrictions in the consent forms for any component cohort or collection; • it does not have the potential to produce information that will enable identification of individual participants or other individually identifiable information The DAC will use these practices in its assessment: • The MLL DAC does NOT attempt to peer review the scientific quality of proposals. However, it does ask for a brief summary of the research to be undertaken, to judge whether it falls within the scope of the consents. It also considers whether the research is grossly inadequate or ethically questionable, and reserves the right to require clarification for those requests that do not appear to attain even a minimal standard of competence; • the use of data by commercial companies for commercial purposes is prohibited; and use of de-identified and anonymized data is permissible

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005797623 1644241623112 5.3 GB
EGAF00005797624 1644282660849 167.7 GB
EGAF00005797625 1644265500186 133.6 GB
EGAF00005797626 1644241021198 6.6 GB
EGAF00005797627 1644239880826 4.3 GB
EGAF00005797628 1644240302183 4.1 GB
EGAF00005797629 1646728440115 147.6 GB
EGAF00005797630 1644270120166 180.2 GB
EGAF00005797631 1644282281503 142.4 GB
EGAF00005797632 1644241623112 5.6 GB
EGAF00005797633 1644277200042 144.0 GB
EGAF00005797634 1644284220186 143.3 GB
EGAF00005797635 1644286260068 149.8 GB
EGAF00005797636 1644296727693 138.4 GB
EGAF00005797637 1644240000419 6.4 GB
EGAF00005797638 1644264420121 140.0 GB
EGAF00005797639 1644264138296 124.3 GB
EGAF00005797640 1644257400321 134.7 GB
EGAF00005797641 1644241800878 7.4 GB
EGAF00005797642 1644241200282 6.4 GB
EGAF00005797643 1644242640750 5.5 GB
EGAF00005797644 1644243480083 9.2 GB
EGAF00005797645 1644241080658 5.5 GB
EGAF00005797646 1644240120168 6.0 GB
EGAF00005797647 1644242040781 6.9 GB
EGAF00005797648 1644239820915 5.9 GB
EGAF00005797649 1644392160018 122.9 GB
EGAF00005797650 1644261900189 139.4 GB
EGAF00005797651 1644240000419 5.4 GB
EGAF00005797652 1644263760199 129.0 GB
EGAF00005797653 1644239042097 8.0 MB
EGAF00005797654 1644239160472 8.7 MB
EGAF00005797655 1644239042097 8.7 MB
EGAF00005797656 1644239100543 8.7 MB
EGAF00005797657 1644239100543 6.2 MB
EGAF00005797658 1644239100543 7.2 MB
EGAF00005797659 1644239042097 6.8 MB
EGAF00005797660 1644239042097 8.0 MB
EGAF00005797661 1644239100543 8.7 MB
EGAF00005797662 1644239042097 8.7 MB
EGAF00005797663 1644379861095 8.7 MB
EGAF00005797664 1644239042097 8.7 MB
EGAF00005797665 1644239042097 8.2 MB
EGAF00005797666 1644239160472 8.7 MB
EGAF00005797667 1644239042097 8.7 MB
EGAF00005797668 1644239100543 8.7 MB
EGAF00005797669 1644239340677 8.7 MB
EGAF00005797670 1644239100543 8.7 MB
EGAF00005797671 1644239160472 6.9 MB
EGAF00005797672 1644239100543 5.8 MB
EGAF00005797673 1644239100543 7.0 MB
EGAF00005797674 1644239340677 7.2 MB
EGAF00005797675 1644239160472 8.7 MB
EGAF00005797676 1644239160472 8.7 MB
EGAF00005797677 1644239042097 7.3 MB
EGAF00005797678 1644379861095 7.6 MB
EGAF00005797679 1644239100543 8.7 MB
EGAF00005797680 1644239100543 7.6 MB
EGAF00005797681 1644239100543 6.8 MB
EGAF00005800316 1644341527182 5.5 GB
EGAF00005800317 1644354180083 150.7 GB
EGAF00005800318 1644344100716 6.5 GB
EGAF00005800319 1644375360030 133.5 GB
EGAF00005800320 1644340274687 1.7 GB
EGAF00005800321 1644342841120 5.2 GB
EGAF00005800322 1644374880023 117.3 GB
EGAF00005800323 1644341161716 6.5 GB
EGAF00005800324 1644341404038 4.0 GB
EGAF00005800325 1644342841120 4.3 GB
EGAF00005800326 1644344100716 5.9 GB
EGAF00005800327 1644341404038 4.7 GB
EGAF00005800328 1646747760059 139.8 GB
EGAF00005800329 1644391980020 122.1 GB
EGAF00005800330 1644370860041 145.9 GB
EGAF00005800331 1644341101736 5.1 GB
EGAF00005800332 1644376200106 146.3 GB
EGAF00005800333 1644341404038 6.4 GB
EGAF00005800334 1644366240390 164.3 GB
EGAF00005800335 1644342721050 6.5 GB
EGAF00005800336 1644341881876 6.9 GB
EGAF00005800337 1644341823162 6.6 GB
EGAF00005800338 1644362040174 143.5 GB
EGAF00005800339 1644376980031 134.5 GB
EGAF00005800340 1644358019822 139.0 GB
EGAF00005800341 1644341527182 4.3 GB
EGAF00005800342 1644360600878 131.1 GB
EGAF00005800343 1644362100316 164.3 GB
EGAF00005800344 1644378300237 141.9 GB
EGAF00005800345 1644386642623 161.6 GB
EGAF00005800346 1644341101736 5.7 GB
EGAF00005800347 1644341944734 5.2 GB
EGAF00005800348 1644344160627 5.9 GB
EGAF00005800349 1644342783973 5.8 GB
EGAF00005800350 1644341161716 5.5 GB
EGAF00005800351 1644340442778 4.3 GB
EGAF00005800352 1644358019822 123.4 GB
EGAF00005800353 1644358082099 126.7 GB
EGAF00005800354 1644362040174 126.0 GB
EGAF00005800355 1644343440735 5.1 GB
EGAF00005800356 1644360000237 97.5 GB
EGAF00005800357 1644341040470 4.6 GB
EGAF00005800358 1644340921467 3.5 GB
EGAF00005800359 1644343561489 5.6 GB
EGAF00005800360 1644341404038 6.3 GB
EGAF00005800361 1644357240973 147.3 GB
EGAF00005800362 1644353160626 141.8 GB
EGAF00005800363 1644376320057 126.5 GB
EGAF00005800364 1644356221541 152.8 GB
EGAF00005800365 1644341944734 6.5 GB
EGAF00005800366 1644340921467 6.1 GB
EGAF00005800367 1644356706365 133.2 GB
EGAF00005800368 1644375480017 142.3 GB
EGAF00005800369 1644361437199 120.1 GB
EGAF00005800370 1644359520354 134.5 GB
EGAF00005800371 1644340527068 4.7 GB
EGAF00005800372 1644379680021 139.2 GB
EGAF00005800373 1644391800056 122.9 GB
EGAF00005800374 1644359640444 139.0 GB
EGAF00005800375 1644342121459 9.5 GB
EGAF00005800376 1644364320091 161.1 GB
EGAF00005800377 1644366480265 165.5 GB
EGAF00005800378 1644362820137 123.6 GB
EGAF00005800379 1644372201949 147.7 GB
EGAF00005800380 1644358019822 139.5 GB
EGAF00005800381 1644357060732 113.3 GB
EGAF00005800382 1644341161716 6.1 GB
EGAF00005800383 1644340801052 5.2 GB
EGAF00005800384 1644360960365 153.6 GB
EGAF00005800385 1644361200404 150.5 GB
EGAF00005800386 1644341762576 4.4 GB
EGAF00005800387 1644351181304 116.0 GB
EGAF00005800388 1644378300237 132.1 GB
EGAF00005800389 1644385020083 143.3 GB
EGAF00005800390 1644341461859 4.5 GB
EGAF00005800391 1644341404038 4.8 GB
EGAF00005800392 1644343861118 6.8 GB
EGAF00005800393 1644342003440 6.2 GB
EGAF00005800394 1644341461859 6.8 GB
EGAF00005800395 1646752080082 191.1 GB
EGAF00005800396 1644355930955 120.5 GB
EGAF00005800397 1644343561489 7.2 GB
EGAF00005800398 1644342003440 6.1 GB
EGAF00005800399 1644379352649 154.2 GB
EGAF00005800400 1644367560228 147.8 GB
EGAF00005800401 1644341101736 6.8 GB
EGAF00005800402 1644343801414 5.7 GB
EGAF00005800403 1644342308143 7.3 GB
EGAF00005800404 1644343440735 7.0 GB
EGAF00005800405 1644339940033 5.7 MB
EGAF00005800406 1644339940033 8.7 MB
EGAF00005800407 1644339940033 6.4 MB
EGAF00005800408 1644339940033 8.7 MB
EGAF00005800409 1644339940033 6.4 MB
EGAF00005800410 1644340177358 8.7 MB
EGAF00005800411 1644340177358 8.7 MB
EGAF00005800412 1644339940033 8.7 MB
EGAF00005800413 1644339940033 6.3 MB
EGAF00005800414 1644339967183 7.9 MB
EGAF00005800415 1644339940033 6.2 MB
EGAF00005800416 1644339967183 8.0 MB
EGAF00005800417 1644339940033 7.2 MB
EGAF00005800418 1644339940033 6.3 MB
EGAF00005800419 1644339940033 8.7 MB
EGAF00005800420 1644339940033 6.5 MB
EGAF00005800421 1644339940033 8.7 MB
EGAF00005800422 1644339940033 5.8 MB
EGAF00005800423 1644339967183 4.9 MB
EGAF00005800424 1644339940033 7.1 MB
EGAF00005800425 1644339940033 7.1 MB
EGAF00005800426 1644339940033 7.1 MB
EGAF00005800427 1644339940033 8.7 MB
EGAF00005800428 1644339940033 8.7 MB
EGAF00005800429 1644339940033 8.7 MB
EGAF00005800430 1644339940033 7.3 MB
EGAF00005800431 1644339940033 8.7 MB
EGAF00005800432 1644339940033 8.7 MB
EGAF00005800433 1644339940033 8.7 MB
EGAF00005800434 1644339940033 8.7 MB
EGAF00005800435 1644339940033 8.7 MB
EGAF00005800436 1644339940033 6.1 MB
EGAF00005800437 1644339940033 7.5 MB
EGAF00005800438 1644339940033 6.3 MB
EGAF00005800439 1644339940033 8.7 MB
EGAF00005800440 1644339940033 7.5 MB
EGAF00005800441 1644339940033 8.7 MB
EGAF00005800442 1644339940033 7.4 MB
EGAF00005800443 1644339940033 7.5 MB
EGAF00005800444 1644339940033 7.1 MB
EGAF00005800445 1644339940033 6.0 MB
EGAF00005800446 1644339967183 8.7 MB
EGAF00005800447 1644340177358 7.7 MB
EGAF00005800448 1644339940033 8.7 MB
EGAF00005800449 1644339940033 6.0 MB
EGAF00005800450 1644339940033 8.7 MB
EGAF00005800451 1644339940033 6.7 MB
EGAF00005800452 1644339940033 7.2 MB
EGAF00005800453 1646998920524 7.2 MB
EGAF00005800454 1644339940033 8.7 MB
EGAF00005800455 1644339940033 8.7 MB
EGAF00005800456 1644339940033 6.5 MB
EGAF00005800457 1644339940033 6.5 MB
EGAF00005800458 1644339940033 8.7 MB
EGAF00005800459 1644339940033 8.7 MB
EGAF00005800460 1644339967183 8.7 MB
EGAF00005800461 1644339967183 8.7 MB
EGAF00005800462 1644339940033 8.7 MB
EGAF00005800463 1644339940033 8.7 MB
EGAF00005800464 1644339940033 6.6 MB
EGAF00005800465 1644339967183 8.7 MB
EGAF00005800466 1644339940033 8.7 MB
EGAF00005800467 1644339940033 8.7 MB
EGAF00005800468 1644339940033 8.7 MB
EGAF00005800469 1644339967183 7.4 MB
EGAF00005800470 1644339940033 8.7 MB
EGAF00005800471 1644339940034 8.7 MB
EGAF00005800472 1644339940033 6.8 MB
EGAF00005800473 1644339940033 8.7 MB
EGAF00005800474 1644339940033 7.4 MB
EGAF00005800475 1644339940033 8.7 MB
EGAF00005800476 1644339967183 5.4 MB
EGAF00005800477 1644339940033 8.7 MB
EGAF00005800478 1644339940033 6.3 MB
EGAF00005800479 1644339940033 7.0 MB
EGAF00005800480 1644339940033 8.7 MB
EGAF00005800481 1644339940033 7.0 MB
EGAF00005800482 1644339967183 8.7 MB
EGAF00005800483 1644339940033 8.7 MB
EGAF00005800484 1644339940033 8.7 MB
EGAF00005800485 1644339940033 8.7 MB
EGAF00005800486 1644339940033 7.1 MB
EGAF00005800487 1644339967183 8.7 MB
EGAF00005800488 1644339940033 6.1 MB
EGAF00005800489 1644339940033 8.7 MB
EGAF00005800490 1644339940033 6.8 MB
EGAF00005800491 1644339940033 7.3 MB
235 Files (8.7 TB)