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Transcriptome analysis for intrahepatic cholangiocarcinoma

Intrahepatic cholangiocarcinomas (iCCs) are characterized by their rarity, difficulty in diagnosis, and overall poor prognosis. We performed comprehensive transcriptomic characterization of treatment-naive iCC. Whole transcriptome analyses identified two prognostic subtypes, concordant with previous reports.The findings could assist in patient stratification with iCCs and in developing rational therapeutic strategies.

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DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions.

Definitions Authorised Personnel: The individuals at the User Institution to whom NCC grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NCC and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. NCC: National Cancer Center. The Institution of the principal investigator. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NCC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NCC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NCC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NCC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NCC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005797081 1644268620130 5.1 GB
EGAF00005797082 1644381616587 5.5 GB
EGAF00005797083 1644236460059 4.7 GB
EGAF00005797084 1644280200239 4.8 GB
EGAF00005797085 1644281160075 5.0 GB
EGAF00005797086 1644266820210 5.3 GB
EGAF00005797087 1644270781201 5.4 GB
EGAF00005797088 1644268141720 5.5 GB
EGAF00005797089 1644281220179 4.5 GB
EGAF00005797090 1644266880243 4.7 GB
EGAF00005797091 1644268141720 5.9 GB
EGAF00005797092 1644268560197 6.3 GB
EGAF00005797093 1644282281503 5.0 GB
EGAF00005797094 1644283740171 5.2 GB
EGAF00005797095 1644382200696 5.1 GB
EGAF00005797096 1644294240615 5.2 GB
EGAF00005797097 1644272036616 4.9 GB
EGAF00005797098 1644268500335 5.0 GB
EGAF00005797099 1644382080358 5.0 GB
EGAF00005797100 1644269881510 5.0 GB
EGAF00005797101 1644267120561 5.2 GB
EGAF00005797102 1644254762261 5.3 GB
EGAF00005797103 1644242280104 4.9 GB
EGAF00005797104 1644266702017 5.1 GB
EGAF00005797105 1644270060565 5.2 GB
EGAF00005797106 1644295500083 5.5 GB
EGAF00005797107 1644239520297 5.5 GB
EGAF00005797108 1644265920400 5.6 GB
EGAF00005797109 1644382275598 5.1 GB
EGAF00005797110 1644265980278 5.1 GB
EGAF00005797111 1644257760152 5.1 GB
EGAF00005797112 1644281400474 5.2 GB
EGAF00005797113 1644380762261 4.7 GB
EGAF00005797114 1644266880243 4.8 GB
EGAF00005797115 1644266702017 5.1 GB
EGAF00005797116 1644265620226 5.2 GB
EGAF00005797117 1644237720957 5.1 GB
EGAF00005797118 1644269280215 5.6 GB
EGAF00005797119 1644238080173 5.4 GB
EGAF00005797120 1644269280215 5.6 GB
EGAF00005797121 1644281100203 5.5 GB
EGAF00005797122 1644269160117 5.9 GB
EGAF00005797123 1644268680210 4.7 GB
EGAF00005797124 1644268920121 5.0 GB
EGAF00005797125 1644265740409 4.5 GB
EGAF00005797126 1644252180403 4.8 GB
EGAF00005797127 1644267000205 4.6 GB
EGAF00005797128 1644280920231 4.7 GB
EGAF00005797129 1644269641668 5.4 GB
EGAF00005797130 1644272036616 5.5 GB
EGAF00005797131 1644267480149 4.5 GB
EGAF00005797132 1644268141720 4.6 GB
EGAF00005797133 1644380942007 4.9 GB
EGAF00005797134 1644268680210 4.9 GB
EGAF00005797135 1644268260178 5.0 GB
EGAF00005797136 1644280740315 5.2 GB
EGAF00005797137 1644267480149 5.2 GB
EGAF00005797138 1644267540980 5.3 GB
EGAF00005797139 1644282781278 7.3 GB
EGAF00005797140 1644384362107 7.8 GB
EGAF00005797141 1644294003128 4.5 GB
EGAF00005797142 1644240840334 4.6 GB
EGAF00005797143 1644280740315 5.0 GB
EGAF00005797144 1644236940132 5.2 GB
EGAF00005797145 1644252960251 5.3 GB
EGAF00005797146 1644265020275 5.5 GB
EGAF00005797147 1644380942007 5.4 GB
EGAF00005797148 1644266580272 5.5 GB
EGAF00005797149 1644294361858 4.3 GB
EGAF00005797150 1644322620363 4.6 GB
EGAF00005797151 1644252180401 6.3 GB
EGAF00005797152 1644381490271 6.4 GB
EGAF00005797153 1644280681010 4.9 GB
EGAF00005797154 1644252300315 5.1 GB
EGAF00005797155 1644254520623 4.6 GB
EGAF00005797156 1644279840272 4.7 GB
EGAF00005797157 1644254403680 5.4 GB
EGAF00005797158 1644253422130 5.5 GB
EGAF00005797159 1644266940104 4.8 GB
EGAF00005797160 1644253680574 4.9 GB
EGAF00005797161 1644294060802 4.3 GB
EGAF00005797162 1644241320282 4.5 GB
EGAF00005797163 1644251581475 5.2 GB
EGAF00005797164 1644266160800 5.2 GB
EGAF00005797165 1644380582350 4.4 GB
EGAF00005797166 1644282281503 4.4 GB
EGAF00005797167 1644251340228 5.7 GB
EGAF00005797168 1644252060147 5.8 GB
EGAF00005797169 1644279780120 4.9 GB
EGAF00005797170 1644241380377 5.2 GB
EGAF00005797171 1644293823890 4.9 GB
EGAF00005797172 1644382200696 5.1 GB
EGAF00005797173 1644281400474 5.7 GB
EGAF00005797174 1644251281013 5.8 GB
EGAF00005797175 1644251821015 5.6 GB
EGAF00005797176 1644268141720 5.7 GB
EGAF00005797177 1644237720957 5.0 GB
EGAF00005797178 1644266580272 5.2 GB
EGAF00005797179 1644252901445 4.3 GB
EGAF00005797180 1644254160268 4.5 GB
EGAF00005797181 1644294060802 5.8 GB
EGAF00005797182 1644252660913 6.1 GB
EGAF00005797183 1644252120189 5.4 GB
EGAF00005797184 1644268680210 5.5 GB
EGAF00005797185 1644268620130 5.0 GB
EGAF00005797186 1644253422130 5.2 GB
EGAF00005797187 1644272036616 4.9 GB
EGAF00005797188 1644268980108 5.2 GB
EGAF00005797189 1644264960553 5.0 GB
EGAF00005797190 1644250860343 5.2 GB
EGAF00005797191 1644253422130 5.1 GB
EGAF00005797192 1644266040187 5.2 GB
EGAF00005797193 1644255181106 4.5 GB
EGAF00005797194 1644265200159 4.7 GB
EGAF00005797195 1644384844049 4.8 GB
EGAF00005797196 1644252901445 5.0 GB
EGAF00005797197 1644251760413 5.3 GB
EGAF00005797198 1644242400353 5.3 GB
EGAF00005797199 1644266520118 5.2 GB
EGAF00005797200 1644252300315 5.2 GB
EGAF00005797201 1644266402005 4.8 GB
EGAF00005797202 1644255720929 5.1 GB
EGAF00005797203 1644266280931 5.6 GB
EGAF00005797204 1644242040781 5.9 GB
EGAF00005797205 1644253422130 4.8 GB
EGAF00005797206 1644383043435 5.1 GB
EGAF00005797207 1644241380377 6.0 GB
EGAF00005797208 1644255780738 6.1 GB
EGAF00005797209 1644253080255 4.6 GB
EGAF00005797210 1644264960553 4.8 GB
EGAF00005797211 1644265680156 5.1 GB
EGAF00005797212 1644255420646 5.3 GB
EGAF00005797213 1644251760413 5.5 GB
EGAF00005797214 1644381420680 5.7 GB
EGAF00005797215 1644240421136 4.4 GB
EGAF00005797216 1644384780198 4.5 GB
EGAF00005797217 1644255900158 5.0 GB
EGAF00005797218 1644280082281 5.1 GB
EGAF00005797219 1644337980389 5.2 GB
EGAF00005797220 1644314248493 5.4 GB
EGAF00005797221 1644251160200 5.2 GB
EGAF00005797222 1644252120189 5.4 GB
EGAF00005797223 1644268141720 5.4 GB
EGAF00005797224 1644381013319 5.5 GB
EGAF00005797225 1644238800706 5.8 GB
EGAF00005797226 1644238956190 5.9 GB
EGAF00005797227 1644236700238 4.9 GB
EGAF00005797228 1644382023176 4.9 GB
EGAF00005797229 1644243780243 4.9 GB
EGAF00005797230 1644237180190 5.0 GB
EGAF00005797231 1644294180633 5.3 GB
EGAF00005797232 1644265320135 5.4 GB
EGAF00005797233 1644251340228 5.3 GB
EGAF00005797234 1644239580723 5.6 GB
EGAF00005797235 1644266101847 4.7 GB
EGAF00005797236 1644268800845 4.8 GB
EGAF00005797237 1644235500296 5.1 GB
EGAF00005797238 1644240363434 5.3 GB
EGAF00005797239 1644265260639 4.7 GB
EGAF00005797240 1644234780139 4.9 GB
EGAF00005797241 1644240180602 5.7 GB
EGAF00005797242 1644240720333 6.0 GB
EGAF00005797243 1644266340090 5.0 GB
EGAF00005797244 1644265800280 5.2 GB
EGAF00005797245 1644235860210 5.1 GB
EGAF00005797246 1644251040121 5.2 GB
EGAF00005797247 1644238956190 4.6 GB
EGAF00005797248 1644239340677 4.6 GB
EGAF00005797249 1644383043435 5.3 GB
EGAF00005797250 1644240240576 5.4 GB
EGAF00005797251 1644239760195 5.2 GB
EGAF00005797252 1644241680939 5.5 GB
EGAF00005797253 1644236400279 5.5 GB
EGAF00005797254 1644241140188 5.6 GB
EGAF00005797255 1644235320068 4.3 GB
EGAF00005797256 1644384720135 4.6 GB
EGAF00005797257 1644381616587 5.7 GB
EGAF00005797258 1644236400279 6.0 GB
EGAF00005797259 1644242640750 6.1 GB
EGAF00005797260 1644294240615 6.3 GB
EGAF00005797261 1644265620226 4.7 GB
EGAF00005797262 1644235860210 4.8 GB
182 Files (945.2 GB)