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Unravelling the contribution of HIF pathway and its therapeutic potential in human AML leukemia-initiating cells

We performed single cell RNA sequencing (scRNA-seq) from bone marrow on 11 pediatric (0-14 years-old) and adolescent and young adult (AYA) (15-39 years-old) de novo AML samples (Dx) (4 inv(16), 3 t(8;21) and 4 rMLL). In addition, for some patients also relapse sample was sequenced (2 inv(16), 2 t(8;21) and 3 rMLL). Cells were sorted into CD34+/CD38- and CD34-/CD38+ and sequenced separately.

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Unravelling the contribution of HIF pathway and its therapeutic potential in human AML leukemia-initiating cells Data Access and Use Agreement

Genomic and anti-tumor immune evolution of breast cancer Data Access and Use Agreement This agreement governs the terms on which access will be granted to the next-generation sequencing data generated as a result of the Genomic and anti-tumor immune evolution of breast cancer study, deposited by members of the Data Access Committee. In signing this agreement, you are agreeing with the Data Access Committee to be bound by the terms and conditions set out in this agreement. NOW THEREFORE in consideration of the access to the Data provided by the Data Access Committee to User Institution, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, and intending to be legally bound hereby, the parties hereto agree as follows: Definitions: Application: means an application made by an entity (including You) to request access to the Data for a specific project and/or purpose. Data: means non personal data including all and any human genetic and raw expression data obtained from the Data Access Committee (which is currently available through the European Genome-phenome Archive). Data Access Committee (DAC): means the members listed in Appendix I, which are responsible for the development, organisation, oversight of these Data, and consider Applications. Data Subject: means a person, who has been informed of the purpose for which the Data was collected, is currently held, and the purposes for which it can and will be distributed and disclosed, and has given his/her informed consent thereto. All references to individual Data Subjects have been removed and the Data is no longer personal data. User means a researcher whose User Institution has signed this Data Access Agreement and has received acknowledgement of the acceptance of its Application. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. 2. You agree not to attempt to link the Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. We have taken organisational and technical measures to ensure this cannot happen. 3. You agree not to transfer or disclose the Data, in whole or part to others, except to persons within the User Institution for the fulfilment of the Purpose as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate Application for access to the Data and enter into a separate Agreement. 4. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and project described in Your Application and for no other purpose, which is attached hereto as Appendix III (the “Purpose”); provided that any use of the Data beyond the scope of the Purpose will require a new Application, approval and Agreement. You agree to destroy the raw data once the project is completed, and upon request of the DAC, provide written certification of such destruction. 5. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, you will destroy earlier versions of the Data, and upon request of the DAC, provide written certification of such destruction. 6. You agree to acknowledge in any work or Publications based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the DAC, in accordance with the Publications Policy attached as Appendix II. 7. You agree and acknowledge that the DAC members, the original Data creators, depositors or copyright holders: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 8. You shall indemnify, hold harmless and defend each of the DAC members and their respective directors, officers, employees and agents against any and all claims (including all associated legal fees and disbursements actually incurred) arising out of this Agreement, including without limitation against any damages or losses, consequential or otherwise, arising in any manner at all from or out of Your use of the Data. Section 8 shall not apply to any public body or institution that is prevented by applicable laws from providing indemnification. 9. You understand and acknowledge that the Data is owned by the DAC and protected by copyright, database rights and other intellectual property rights owned by the DAC. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Purpose and for no other purpose, or sell all or any part of the Data in any circumstances. 10. You recognize that nothing in this Agreement shall operate to transfer to You any ownership or intellectual property rights relating to the Data. 11. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy or return any Data, and upon request, provide written certification of such destruction. For the avoidance of doubt clause 3, 7, 8, 14, 15 will continue to operate in full force and effect. 12. You accept that it may be necessary for the DAC to alter the terms of this Agreement from time to time in order to address new concerns. In this event, one of the DAC members will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the Purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You agree that the Data is protected by and subject to applicable international laws, which may include without limitation the UK Data Protection Act 1998, and that You are responsible for ensuring compliance with any such laws. The Data Access Committee reserve the right to request and inspect Your data security and management documentation to ensure the adequacy of data protection measures in countries that have no privacy legislation comparable with that contained herein. 15. You agree to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the DAC and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 16. Part or all of any section of this Agreement that is indefinite, invalid, illegal or otherwise voidable or unenforceable may be severed and the balance of this agreement will continue in full force and effect. Appendix I Membership Data Access Committee Leticia De Mattos-Arruda, IrsiCaixa Foundation Carla Dos Anjos De Souza, IrsiCaixa Foundation Juan Blanco Heredia, IrsiCaixa Foundation   Appendix II Publications Policy Any use of Data must be acknowledged using the following wording: "This study makes use of data generated by the “Genomic and anti-tumor immune evolution of breast cancer ”.   Appendix III Application (approved by the Data Access Committee)   For and on behalf of User Institution: Signature of Institutional or Administrative Authority: Print name: User Institution: Date: For and on behalf of User: Although I am not a party to this Agreement I have read, understood and acknowledge its terms and conditions. Name of Applicant(s): Signature of Applicant(s): Date: WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005788171 1643627642144 875.7 MB
EGAF00005788172 1643627344170 1.9 GB
EGAF00005788173 1643627524761 2.1 GB
EGAF00005788174 1643627884838 4.6 GB
EGAF00005788175 1643628026285 900.1 MB
EGAF00005788176 1643627344170 2.0 GB
EGAF00005788177 1643628300335 2.1 GB
EGAF00005788178 1643627820598 4.6 GB
EGAF00005788179 1643627472034 1.6 GB
EGAF00005788180 1643627582374 3.6 GB
EGAF00005788181 1643628026285 1.6 GB
EGAF00005788182 1643628541807 3.6 GB
EGAF00005788183 1643627642144 2.1 GB
EGAF00005788184 1643631300255 4.6 GB
EGAF00005788185 1643627940816 1.7 GB
EGAF00005788186 1643628420313 3.7 GB
EGAF00005788187 1643627940816 2.1 GB
EGAF00005788188 1643628780299 4.7 GB
EGAF00005788189 1643628083985 2.1 GB
EGAF00005788190 1643628780299 4.7 GB
EGAF00005788191 1643628242468 2.2 GB
EGAF00005788192 1643628360370 5.0 GB
EGAF00005788193 1643627524761 1.4 GB
EGAF00005788194 1643628480622 3.2 GB
EGAF00005788195 1643628026285 2.8 GB
EGAF00005788196 1643628600279 6.5 GB
EGAF00005788197 1643628360370 2.7 GB
EGAF00005788198 1643628780299 6.3 GB
EGAF00005788199 1643627524761 2.0 GB
EGAF00005788200 1643628083985 4.7 GB
EGAF00005788201 1643627410291 1.2 GB
EGAF00005788202 1643627410291 2.6 GB
EGAF00005788203 1643628420313 1.8 GB
EGAF00005788204 1643628660333 3.9 GB
EGAF00005788205 1643627582374 1.8 GB
EGAF00005788206 1643628360370 4.1 GB
EGAF00005788207 1643628420313 2.3 GB
EGAF00005788208 1643628026285 5.2 GB
EGAF00005788209 1643628420313 2.4 GB
EGAF00005788210 1643628840032 5.3 GB
EGAF00005788211 1643631000118 2.3 GB
EGAF00005788212 1643628780299 5.0 GB
EGAF00005788213 1643628300335 2.4 GB
EGAF00005788214 1643628660333 5.1 GB
EGAF00005788215 1643627820598 1.6 GB
EGAF00005788216 1643628780299 3.6 GB
EGAF00005788217 1643627410290 1.8 GB
EGAF00005788218 1643628840032 4.2 GB
EGAF00005788219 1643628180490 1.6 GB
EGAF00005788220 1643628720886 3.6 GB
EGAF00005788221 1643630940022 1.2 GB
EGAF00005788222 1643627582374 2.8 GB
EGAF00005788223 1643631000118 2.1 GB
EGAF00005788224 1643628420313 4.7 GB
EGAF00005788225 1643628180490 1.8 GB
EGAF00005788226 1643631120033 4.1 GB
EGAF00005788227 1643627884838 2.3 GB
EGAF00005788228 1643628600279 5.4 GB
EGAF00005788229 1643627582374 1.8 GB
EGAF00005788230 1643627820598 4.2 GB
EGAF00005788231 1643627702877 751.0 MB
EGAF00005788232 1643628026285 1.7 GB
EGAF00005788233 1643627940816 1.4 GB
EGAF00005788234 1643627820598 3.2 GB
EGAF00005788235 1643627410290 740.7 MB
EGAF00005788236 1643628300335 1.7 GB
EGAF00005788237 1643627761296 2.5 GB
EGAF00005788238 1643628840032 5.6 GB
EGAF00005788239 1643627344170 1.0 GB
EGAF00005788240 1643627940816 2.4 GB
EGAF00005788241 1643627940816 2.3 GB
EGAF00005788242 1643628541807 5.5 GB
EGAF00005788243 1643628026285 2.4 GB
EGAF00005788244 1643628960026 5.4 GB
EGAF00005788245 1643628026285 2.0 GB
EGAF00005788246 1643628026285 4.7 GB
EGAF00005788247 1643627582374 1.6 GB
EGAF00005788248 1643628026285 3.7 GB
EGAF00005788249 1643628360370 2.2 GB
EGAF00005788250 1643628660333 5.0 GB
EGAF00005788251 1643627642144 2.1 GB
EGAF00005788252 1643628180490 4.5 GB
EGAF00005788253 1643628360370 2.4 GB
EGAF00005788254 1643628900218 5.6 GB
EGAF00005788255 1643627761296 1.8 GB
EGAF00005788256 1643627642144 4.2 GB
EGAF00005788257 1643627472034 2.0 GB
EGAF00005788258 1643627410290 4.5 GB
EGAF00005788259 1643627820598 683.1 MB
EGAF00005788260 1643627884838 1.5 GB
EGAF00005788261 1643627472034 2.0 GB
EGAF00005788262 1643627761296 4.7 GB
EGAF00005788263 1643631120033 1.7 GB
EGAF00005788264 1643628242468 3.8 GB
EGAF00005788265 1643628180490 2.3 GB
EGAF00005788266 1643628300335 5.0 GB
EGAF00005788267 1643627344170 2.4 GB
EGAF00005788268 1643628600279 5.5 GB
EGAF00005788269 1643627702877 897.0 MB
EGAF00005788270 1643628242468 2.0 GB
EGAF00005788271 1643627224571 1.1 GB
EGAF00005788272 1643628242468 2.5 GB
EGAF00005788273 1643627642144 2.2 GB
EGAF00005788274 1643628480622 5.1 GB
EGAF00005788275 1643627761296 885.5 MB
EGAF00005788276 1643627642144 2.0 GB
EGAF00005788277 1643628083985 2.2 GB
EGAF00005788278 1643628660333 5.1 GB
EGAF00005788279 1643627820598 1.2 GB
EGAF00005788280 1643628180490 2.5 GB
EGAF00005788281 1643627884838 2.5 GB
EGAF00005788282 1643628780299 5.8 GB
EGAF00005788283 1643628026285 2.4 GB
EGAF00005788284 1643628840032 5.7 GB
EGAF00005788285 1643628026285 2.0 GB
EGAF00005788286 1643628180490 4.4 GB
EGAF00005788287 1643628083985 2.4 GB
EGAF00005788288 1643628900218 5.4 GB
EGAF00005788289 1643631120033 1.1 GB
EGAF00005788290 1643627524761 2.4 GB
EGAF00005788291 1643627524761 1.7 GB
EGAF00005788292 1643628840032 3.8 GB
EGAF00005788293 1643627283984 2.0 GB
EGAF00005788294 1643627761296 4.4 GB
EGAF00005788295 1643627582374 2.1 GB
EGAF00005788296 1643627761296 4.4 GB
EGAF00005788297 1643628180490 2.1 GB
EGAF00005788298 1643628026285 4.6 GB
EGAF00005788299 1643627642144 796.0 MB
EGAF00005788300 1643628026285 1.8 GB
EGAF00005788301 1643627642144 2.1 GB
EGAF00005788302 1643627820598 4.6 GB
EGAF00005788303 1643627820598 2.1 GB
EGAF00005788304 1643628720886 4.5 GB
EGAF00005788305 1643627283984 1.3 GB
EGAF00005788306 1643627702877 3.0 GB
EGAF00005788307 1643631120033 1.1 GB
EGAF00005788308 1643627702877 2.5 GB
EGAF00005788309 1643627761296 1.6 GB
EGAF00005788310 1643627761296 3.7 GB
EGAF00005788311 1643627410290 2.0 GB
EGAF00005788312 1643628300335 4.6 GB
EGAF00005788313 1643627884838 1.6 GB
EGAF00005788314 1643628480622 3.6 GB
EGAF00005788315 1643628026285 2.1 GB
EGAF00005788316 1643628541807 4.9 GB
EGAF00005788317 1643627702877 2.1 GB
EGAF00005788318 1643628083985 4.9 GB
EGAF00005788319 1643628120667 2.3 GB
EGAF00005788320 1643628600279 5.0 GB
EGAF00005788321 1643631060036 673.7 MB
EGAF00005788322 1643627884838 1.5 GB
EGAF00005788323 1643627224571 822.8 MB
EGAF00005788324 1643627940816 1.9 GB
EGAF00005788325 1643628420313 2.5 GB
EGAF00005788326 1643628541807 5.6 GB
EGAF00005788327 1643628083985 2.5 GB
EGAF00005788328 1643627582374 5.6 GB
EGAF00005788329 1643628180490 2.3 GB
EGAF00005788330 1643628960026 5.5 GB
EGAF00005788331 1643627472034 2.4 GB
EGAF00005788332 1643628420313 5.4 GB
EGAF00005788333 1643627820598 2.4 GB
EGAF00005788334 1643628780299 5.6 GB
164 Files (490.6 GB)