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Targeted Myeloid DNA-Panelsequencing, DKFZ

Targeted myeloid DNA-Panelsequencing from purified bone marrow blasts of 104 treatment naive AML patients from the discovery cohort. For more details, we refere to Jayavelu, Wolf, Buettner et al. Libraries were prepared from 40 ng DNA using the QIASeq Human Myeloid Neoplasms Panel (Qiagen) according to the manufacturer’s protocol. Samples were tagged with the QIAseq 96-Unique Dual Index Set A for Illumina platforms (Qiagen) to yield unique combinations of i5 and i7 barcodes for each sample. Sample fragment size distribution and concentration was estimated using the Agilent High Sensitivity DNA kit on a 2100 Bioanalyzer (Agilent). Samples were pooled in an equimolar fashion, denatured, and diluted to 1.5 pM according to Illumina’s recommendations. The diluted library was sequenced on a NextSeq 500 benchtop sequencer (Illumina) using NextSeq High Output cartridges. Demultiplexing was performed using the BaseSpace cloud platform (Illumina).

Request Access

DAP for genomic sequencing data generated as part of the "AML proteogenomic landscape" paper.

In requesting access to and retrieving data from this repository: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the authors and the relevant primary collectors and their funders. Suitable wording is provided upon request. 10. You accept that the authors, represented by the data accessing committee, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the authors, represented by the data accessing committee, or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the authors, represented by the data accessing committee, or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, including but not limited to the “Gendiagnostikgesetzt”, the EU General Data Protection Regulation (GDPR), and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EU. 17. This agreement shall be construed, interpreted and governed by the laws of the Federal Republic of Germany and the European Union and shall be subject to the non-exclusive jurisdiction of the german and european courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005784904 1643267520990 18.4 MB
EGAF00005784905 1643267285868 20.1 MB
EGAF00005784906 1643267406684 453.9 MB
EGAF00005784907 1643267341236 488.5 MB
EGAF00005784908 1643267520990 588.6 MB
EGAF00005784909 1643267588356 646.5 MB
EGAF00005784910 1643267520990 886.0 MB
EGAF00005784911 1643267406684 959.3 MB
EGAF00005784912 1643267285868 269.9 MB
EGAF00005784913 1643267406684 290.2 MB
EGAF00005784914 1643267520990 934.7 MB
EGAF00005784915 1643267520990 1.0 GB
EGAF00005784916 1643267588356 242.9 MB
EGAF00005784917 1643267285868 267.7 MB
EGAF00005784918 1643267406684 254.5 MB
EGAF00005784919 1643267341236 282.0 MB
EGAF00005784920 1643267461309 505.5 MB
EGAF00005784921 1643267520990 556.2 MB
EGAF00005784922 1643267341236 679.3 MB
EGAF00005784923 1643267646874 747.6 MB
EGAF00005784924 1643267285868 450.1 MB
EGAF00005784925 1643267406684 484.6 MB
EGAF00005784926 1643267461309 413.8 MB
EGAF00005784927 1643267588356 444.7 MB
EGAF00005784928 1643267285868 27.9 MB
EGAF00005784929 1643267461309 30.7 MB
EGAF00005784930 1643267520990 586.1 MB
EGAF00005784931 1643267461309 644.0 MB
EGAF00005784932 1643267285868 168.3 MB
EGAF00005784933 1643267285868 182.1 MB
EGAF00005784934 1643267520990 729.4 MB
EGAF00005784935 1643267341236 808.3 MB
EGAF00005784936 1643267285869 286.7 MB
EGAF00005784937 1643267406684 311.0 MB
EGAF00005784938 1643267588356 728.4 MB
EGAF00005784939 1643267520990 808.7 MB
EGAF00005784940 1643267588356 945.7 MB
EGAF00005784941 1643267588356 1.0 GB
EGAF00005784942 1643267520990 619.3 MB
EGAF00005784943 1643267406684 682.0 MB
EGAF00005784944 1643267285868 467.3 MB
EGAF00005784945 1643267406684 513.2 MB
EGAF00005784946 1643267285869 303.0 MB
EGAF00005784947 1643267285868 335.6 MB
EGAF00005784948 1643267406684 587.1 MB
EGAF00005784949 1643267520990 632.8 MB
EGAF00005784950 1643267702640 962.5 MB
EGAF00005784951 1643267646874 1.1 GB
EGAF00005784952 1643267406684 286.5 MB
EGAF00005784953 1643267406684 310.1 MB
EGAF00005784954 1643267406684 743.3 MB
EGAF00005784955 1643267461309 821.4 MB
EGAF00005784956 1643267341236 569.5 MB
EGAF00005784957 1643267406684 628.8 MB
EGAF00005784958 1643267588356 1.2 GB
EGAF00005784959 1643267760022 1.3 GB
EGAF00005784960 1643267406684 251.6 MB
EGAF00005784961 1643267520990 277.7 MB
EGAF00005784962 1643267406685 506.6 MB
EGAF00005784963 1643267406685 525.3 MB
EGAF00005784964 1643267520990 748.3 MB
EGAF00005784965 1643267406684 822.7 MB
EGAF00005784968 1643267341236 64.9 MB
EGAF00005784969 1643267285868 70.9 MB
EGAF00005784970 1643267702640 2.7 GB
EGAF00005784971 1643267702640 2.9 GB
EGAF00005784972 1643267520990 750.1 MB
EGAF00005784973 1643267520990 828.4 MB
EGAF00005784974 1643267341236 362.7 MB
EGAF00005784975 1643267461309 399.7 MB
EGAF00005784976 1643267760022 1.6 GB
EGAF00005784977 1643267760022 1.8 GB
EGAF00005784978 1643267520990 685.8 MB
EGAF00005784979 1643267341236 712.6 MB
EGAF00005784980 1643267588356 1.3 GB
EGAF00005784981 1643267520990 1.4 GB
EGAF00005784982 1643267461309 353.3 MB
EGAF00005784983 1643267406684 380.5 MB
EGAF00005784984 1643267588356 726.2 MB
EGAF00005784985 1643267520990 797.6 MB
EGAF00005784986 1643267820020 2.1 GB
EGAF00005784987 1643267880019 2.3 GB
EGAF00005784988 1643267341236 393.2 MB
EGAF00005784989 1643267406685 424.8 MB
EGAF00005784990 1643267461309 730.8 MB
EGAF00005784991 1643267702640 801.7 MB
EGAF00005784992 1643267461309 1.4 GB
EGAF00005784993 1643267520990 1.4 GB
EGAF00005784994 1643267702640 351.3 MB
EGAF00005784995 1643267461309 378.3 MB
EGAF00005784996 1643267406684 535.3 MB
EGAF00005784997 1643267702640 556.8 MB
EGAF00005784998 1643267702640 1.1 GB
EGAF00005784999 1643267646874 1.1 GB
EGAF00005785000 1643267341236 298.2 MB
EGAF00005785001 1643267702640 309.5 MB
EGAF00005785002 1643267285869 200.1 MB
EGAF00005785003 1643267341236 216.0 MB
EGAF00005785004 1643267341236 150.2 MB
EGAF00005785005 1643267646874 165.6 MB
EGAF00005785006 1643267461309 399.4 MB
EGAF00005785007 1643267588356 440.7 MB
EGAF00005785008 1643267520990 1.9 GB
EGAF00005785009 1643267820020 2.0 GB
EGAF00005785010 1643267285869 308.7 MB
EGAF00005785011 1643267646874 320.0 MB
EGAF00005785012 1643267406684 286.9 MB
EGAF00005785013 1643267285869 297.4 MB
EGAF00005785014 1643267406684 315.3 MB
EGAF00005785015 1643267220623 347.2 MB
EGAF00005785016 1643267702640 798.8 MB
EGAF00005785017 1643267406684 880.6 MB
EGAF00005785018 1643267285869 862.7 MB
EGAF00005785019 1643267646874 895.6 MB
EGAF00005785020 1643267520990 1.8 GB
EGAF00005785021 1643267760022 1.8 GB
EGAF00005785022 1643267461309 1.1 GB
EGAF00005785023 1643267702640 1.2 GB
EGAF00005785024 1643267341236 983.3 MB
EGAF00005785025 1643267406684 1.1 GB
EGAF00005785026 1643267406684 414.4 MB
EGAF00005785027 1643267406684 429.8 MB
EGAF00005785028 1643267702640 785.9 MB
EGAF00005785029 1643267406684 866.6 MB
EGAF00005785030 1643267285868 332.6 MB
EGAF00005785031 1643267220623 362.1 MB
EGAF00005785032 1643267406684 945.6 MB
EGAF00005785033 1643267406684 1.0 GB
EGAF00005785034 1643267406685 472.9 MB
EGAF00005785035 1643267341236 492.5 MB
EGAF00005785036 1643267220623 212.0 MB
EGAF00005785037 1643267220623 233.0 MB
EGAF00005785038 1643267285868 739.2 MB
EGAF00005785039 1643267285869 812.5 MB
EGAF00005785040 1643267461309 730.8 MB
EGAF00005785041 1643267285869 800.7 MB
EGAF00005785042 1643267285868 948.7 MB
EGAF00005785043 1643267461309 1.0 GB
EGAF00005785044 1643267646874 650.5 MB
EGAF00005785045 1643267341236 704.8 MB
EGAF00005785046 1643267220623 375.4 MB
EGAF00005785047 1643267220623 413.5 MB
EGAF00005785048 1643267461309 691.3 MB
EGAF00005785049 1643267406685 760.0 MB
EGAF00005785050 1643267220623 439.2 MB
EGAF00005785051 1643267646874 462.9 MB
EGAF00005785052 1643267588356 260.1 MB
EGAF00005785053 1643267220623 270.1 MB
EGAF00005785054 1643267461309 1.3 GB
EGAF00005785055 1643267760022 1.4 GB
EGAF00005785056 1643267520990 2.0 GB
EGAF00005785057 1643267646874 2.2 GB
EGAF00005785058 1643267220623 398.4 MB
EGAF00005785059 1643267341236 429.2 MB
EGAF00005785060 1643267285868 626.5 MB
EGAF00005785061 1643267341236 678.1 MB
EGAF00005785062 1643267760022 2.4 GB
EGAF00005785063 1643267702640 2.7 GB
EGAF00005785064 1643267220623 399.6 MB
EGAF00005785065 1643267461309 431.0 MB
EGAF00005785066 1643267406685 462.5 MB
EGAF00005785067 1643267341236 479.9 MB
EGAF00005785068 1643267341236 280.6 MB
EGAF00005785069 1643267588356 291.0 MB
EGAF00005785070 1643267406685 189.8 MB
EGAF00005785071 1643267406684 204.5 MB
EGAF00005785072 1643267285868 310.2 MB
EGAF00005785073 1643267285868 335.0 MB
EGAF00005785074 1643267520990 558.3 MB
EGAF00005785075 1643267406684 616.5 MB
EGAF00005785076 1643267285869 340.6 MB
EGAF00005785077 1643267702640 367.1 MB
EGAF00005785078 1643267220623 251.7 MB
EGAF00005785079 1643267285869 276.9 MB
EGAF00005785080 1643267285868 302.6 MB
EGAF00005785081 1643267341236 314.5 MB
EGAF00005785082 1643267406684 377.9 MB
EGAF00005785083 1643267461309 417.6 MB
EGAF00005785084 1643267285868 235.7 MB
EGAF00005785085 1643267646874 254.7 MB
EGAF00005785086 1643267285868 257.1 MB
EGAF00005785087 1643267285868 289.2 MB
EGAF00005785088 1643267220623 322.1 MB
EGAF00005785089 1643267285868 349.4 MB
EGAF00005785090 1643267461309 706.4 MB
EGAF00005785091 1643267520990 779.2 MB
EGAF00005785092 1643267341236 264.5 MB
EGAF00005785093 1643267588356 274.5 MB
EGAF00005785094 1643267520990 221.6 MB
EGAF00005785095 1643267341236 245.0 MB
EGAF00005785096 1643267285869 348.4 MB
EGAF00005785097 1643267406684 382.3 MB
EGAF00005785098 1643267646874 511.0 MB
EGAF00005785099 1643267646874 562.7 MB
EGAF00005785100 1643267588356 403.4 MB
EGAF00005785101 1643267461309 441.2 MB
EGAF00005785102 1643267702640 950.7 MB
EGAF00005785103 1643267461309 1.0 GB
EGAF00005785104 1643267646874 338.2 MB
EGAF00005785105 1643271060237 351.8 MB
EGAF00005785106 1643267406684 719.6 MB
EGAF00005785107 1643267702640 794.0 MB
EGAF00005785108 1643267520990 949.5 MB
EGAF00005785109 1643267702640 1.0 GB
EGAF00005785110 1643267341236 176.7 MB
EGAF00005785111 1643267285868 193.9 MB
EGAF00005785112 1643267160112 1.7 MB
EGAF00007020925 1662463822957 942.9 MB
208 Files (137.4 GB)