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Shallow whole genome sequencing and targeted capture sequencing data of PCNSL and PTL primary and relapse pairs

Shallow whole genome sequencing for copy number analysis and targeted capture sequencing data for translocation and mutation anslysis of paired primary and relapse PCNSL and PTL samples

Request Access

Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005722377 1637680562454 2.3 GB
EGAF00005722378 1637681220592 3.1 GB
EGAF00005722379 1637681402836 2.2 GB
EGAF00005722380 1637682061822 2.6 GB
EGAF00005722381 1637680980292 2.9 GB
EGAF00005722382 1637681281646 2.2 GB
EGAF00005722383 1637682360205 2.0 GB
EGAF00005722384 1637680800269 2.1 GB
EGAF00005722385 1637681281646 2.6 GB
EGAF00005722386 1637680740689 4.5 GB
EGAF00005722387 1637681281646 3.3 GB
EGAF00005722388 1637682120289 1.4 GB
EGAF00005722389 1637682002179 2.4 GB
EGAF00005722390 1637682428849 2.4 GB
EGAF00005722391 1637681462527 2.6 GB
EGAF00005722392 1637681100375 2.4 GB
EGAF00005722393 1637682180460 3.1 GB
EGAF00005722394 1637681820471 3.2 GB
EGAF00005722395 1637680441903 1.7 GB
EGAF00005722396 1637682721577 2.5 GB
EGAF00005722397 1637681820471 2.6 GB
EGAF00005722398 1637680680199 3.2 GB
EGAF00005722399 1637680260968 2.3 GB
EGAF00005722400 1637681581452 2.0 GB
EGAF00005722401 1637681820471 1.9 GB
EGAF00005722402 1637681281646 1.8 GB
EGAF00005722403 1637681462527 2.7 GB
EGAF00005722404 1637681943896 2.0 GB
EGAF00005722405 1637682120289 2.6 GB
EGAF00005722406 1637681281646 3.1 GB
EGAF00005722407 1637681462526 885.3 MB
EGAF00005722408 1637680441903 1.6 GB
EGAF00005722409 1637681880278 2.3 GB
EGAF00005722410 1637680380983 2.4 GB
EGAF00005722411 1637680740689 1.6 GB
EGAF00005722412 1637681281646 2.5 GB
EGAF00005722413 1637681281646 1.8 GB
EGAF00005722414 1637680800269 1.5 GB
EGAF00005722415 1637681340326 1.5 GB
EGAF00005722416 1637680860217 1.8 GB
EGAF00005722417 1637680621984 643.1 MB
EGAF00005722418 1637681820471 1.7 GB
EGAF00005722419 1637681522071 1.8 GB
EGAF00005722420 1637682780201 3.7 GB
EGAF00005722421 1637681281646 2.7 GB
EGAF00005722422 1637682360205 2.5 GB
EGAF00005722423 1637681760449 1.8 GB
EGAF00005722424 1637680621984 2.2 GB
EGAF00005722425 1637680860217 1.5 GB
EGAF00005722426 1637680680199 1.8 GB
EGAF00005722427 1637681100375 1.8 GB
EGAF00005722428 1637682300259 2.1 GB
EGAF00005722429 1637682002179 2.2 GB
EGAF00005722430 1637681700530 2.1 GB
EGAF00005722431 1637682002179 2.2 GB
EGAF00005722432 1637681281646 1.7 GB
EGAF00005722433 1637682780201 3.9 GB
EGAF00005722434 1637682601310 2.9 GB
EGAF00005722435 1637682540119 2.5 GB
EGAF00005722436 1637681880278 1.9 GB
EGAF00005722437 1637681700530 3.6 GB
EGAF00005722438 1637681522071 1.3 GB
EGAF00005722439 1637681220592 1.7 GB
EGAF00005722440 1637681162685 2.0 GB
EGAF00005722441 1637682540119 2.0 GB
EGAF00005722442 1637680860217 1.5 GB
EGAF00005722443 1637680740689 1.8 GB
EGAF00005722444 1637682180460 1.1 GB
EGAF00005722445 1637680980292 558.5 MB
EGAF00005722446 1637681760449 1.9 GB
EGAF00005722447 1637680562454 1.6 GB
EGAF00005722448 1637682061822 2.6 GB
EGAF00005722449 1637681581452 1.6 GB
EGAF00005722450 1637681760449 2.4 GB
EGAF00005722451 1637681281646 2.0 GB
EGAF00005722452 1637680621984 1.3 GB
EGAF00005722453 1637681760449 2.5 GB
EGAF00005722454 1637682428849 2.2 GB
EGAF00005722455 1637682243189 2.1 GB
EGAF00005722456 1637682243190 2.0 GB
EGAF00005722457 1637681943896 1.8 GB
EGAF00005722458 1637681700530 2.0 GB
EGAF00005722459 1637680980292 1.9 GB
EGAF00005722460 1637681880278 2.3 GB
EGAF00005722461 1637680980292 1.8 GB
EGAF00005722462 1637682480193 2.4 GB
EGAF00005722463 1637681462526 3.1 GB
EGAF00005722464 1637681220592 1.7 GB
EGAF00005722465 1637681880278 1.7 GB
EGAF00005722466 1637680621984 1.8 GB
EGAF00005722467 1637682842609 3.1 GB
EGAF00005722468 1637681340325 2.1 GB
EGAF00005722469 1637681462526 2.6 GB
EGAF00005722470 1637680740689 3.4 GB
EGAF00005722471 1637681281646 1.8 GB
EGAF00005722472 1637681040266 2.3 GB
EGAF00005722473 1637681820471 1.6 GB
EGAF00005722474 1637682061822 2.3 GB
EGAF00005722475 1637680680199 2.8 GB
EGAF00005722476 1637681581452 3.9 GB
EGAF00005722477 1637681340325 1.8 GB
EGAF00005722478 1637681340325 1.9 GB
EGAF00005722479 1637680441903 1.9 GB
EGAF00005722480 1637680860217 1.3 GB
EGAF00005722481 1637682428849 1.6 GB
EGAF00005722482 1637681641932 2.0 GB
EGAF00005722483 1637681581452 2.8 GB
EGAF00005722484 1637680562454 1.7 GB
EGAF00005722485 1637680921446 1.5 GB
EGAF00005722486 1637681040266 4.4 GB
EGAF00005722487 1637681581452 2.2 GB
EGAF00005722488 1637680921446 4.6 GB
EGAF00005722489 1637681760449 2.0 GB
EGAF00005722490 1637681641932 1.5 GB
EGAF00005722491 1637682120289 1.2 GB
EGAF00005722492 1637683140780 3.6 GB
EGAF00005722493 1637682243189 2.1 GB
EGAF00005722494 1637680500358 1.4 GB
EGAF00005722495 1637681402836 1.8 GB
EGAF00005722496 1637682180460 2.0 GB
EGAF00005722497 1637682002179 1.2 GB
EGAF00005722498 1637681462526 1.9 GB
EGAF00005722499 1637681100375 1.1 GB
EGAF00005722500 1637682480192 2.8 GB
EGAF00005722501 1637680740689 2.8 GB
EGAF00005722502 1637681402836 1.3 GB
EGAF00005722503 1637680800269 2.2 GB
EGAF00005722504 1637680140301 2.1 GB
EGAF00005722505 1637681281646 2.3 GB
EGAF00005722506 1637682721577 3.1 GB
EGAF00005722507 1637682061822 973.4 MB
EGAF00005722508 1637680140301 849.8 MB
EGAF00005722509 1637680740689 1.8 GB
EGAF00005722510 1637680500358 2.0 GB
EGAF00005722511 1637681943896 2.0 GB
EGAF00005722512 1637680260968 644.6 MB
EGAF00005722513 1637680380983 1.7 GB
EGAF00005722514 1637682061822 1.6 GB
EGAF00005722515 1637682721577 2.1 GB
EGAF00005722516 1637680500358 963.9 MB
EGAF00005722517 1637681522071 2.1 GB
EGAF00005722518 1637681700530 2.3 GB
EGAF00005722519 1637681641932 2.4 GB
EGAF00005722520 1637682180460 2.9 GB
EGAF00005722521 1637681162685 2.4 GB
EGAF00005722522 1637681162685 2.1 GB
EGAF00005722523 1637682243189 2.6 GB
EGAF00005722524 1637682660289 2.0 GB
EGAF00005722525 1637682842609 1.8 GB
EGAF00005722526 1637681700530 3.1 GB
EGAF00005722527 1637682061822 1.4 GB
EGAF00005722528 1637680860217 2.4 GB
EGAF00005722529 1637681943896 1.3 GB
EGAF00005722530 1637680140301 458.6 MB
EGAF00005722531 1637680562454 1.7 GB
EGAF00005722532 1637680260968 723.2 MB
EGAF00005722533 1637680140301 1.2 GB
EGAF00005722534 1637681162685 2.1 GB
EGAF00005722535 1637680260968 870.9 MB
EGAF00005722536 1637680800269 1.0 GB
EGAF00005722537 1637681522071 2.3 GB
EGAF00005722538 1637680260968 2.1 GB
EGAF00005722539 1637680621984 1.5 GB
EGAF00005722540 1637680020201 292.4 MB
EGAF00005722541 1637682360205 2.4 GB
EGAF00005722542 1637679900170 821.2 MB
EGAF00005722543 1637680740689 2.4 GB
EGAF00005722544 1637681281646 3.7 GB
EGAF00005722545 1637680200453 767.6 MB
EGAF00005722546 1637680740689 597.0 MB
EGAF00005722547 1637680980292 2.1 GB
EGAF00005722548 1637681402836 3.9 GB
EGAF00005722549 1637681641932 2.7 GB
EGAF00005722550 1637680740689 3.0 GB
EGAF00005722551 1637682061822 4.3 GB
EGAF00005722552 1637680081916 664.1 MB
EGAF00005722553 1637681220592 2.1 GB
EGAF00005722554 1637680380983 1.2 GB
EGAF00005722555 1637680621984 2.1 GB
EGAF00005722556 1637681522071 2.6 GB
EGAF00005722557 1637680200452 3.2 GB
EGAF00005722558 1637680140301 2.0 GB
EGAF00005722559 1637682180460 2.4 GB
EGAF00005722560 1637680081916 1.2 GB
EGAF00005722561 1637681220592 1.1 GB
EGAF00005722562 1637681340325 1.4 GB
EGAF00005722563 1637682061822 2.0 GB
EGAF00005722564 1637681220592 1.4 GB
EGAF00005722565 1637681281646 2.5 GB
EGAF00005722566 1637681340325 2.1 GB
EGAF00005722567 1637681220592 2.7 GB
EGAF00005722568 1637682540119 3.2 GB
EGAF00005722569 1637680380983 3.9 GB
EGAF00005722570 1637681700530 3.8 GB
EGAF00005722571 1637682721577 2.1 GB
EGAF00005722572 1637682120289 1.7 GB
EGAF00005722573 1637682243189 3.3 GB
EGAF00005722574 1637680680199 854.8 MB
EGAF00005722575 1637683140780 4.5 GB
EGAF00005722576 1637682243189 2.8 GB
EGAF00005722577 1637682180460 2.2 GB
EGAF00005722578 1637682601309 3.7 GB
EGAF00005722579 1637681700530 2.3 GB
EGAF00005722580 1637682002179 4.0 GB
EGAF00005722581 1637681943896 2.5 GB
EGAF00005722582 1637683020532 2.8 GB
EGAF00005722583 1637680800269 1.4 GB
EGAF00005722584 1637680140301 1.6 GB
EGAF00005722585 1637681040266 887.4 MB
EGAF00005722586 1637680200452 770.2 MB
EGAF00005722587 1637681040266 1.5 GB
EGAF00005722588 1637680140301 814.1 MB
EGAF00005722589 1637680680199 1.3 GB
EGAF00005722590 1637681281646 3.2 GB
EGAF00005722591 1637681340325 2.1 GB
EGAF00005722592 1637680621984 1.1 GB
EGAF00005722593 1637682243189 6.7 GB
EGAF00005722594 1637680081916 369.1 MB
EGAF00005722595 1637681581452 2.2 GB
EGAF00005722596 1637682360205 2.8 GB
EGAF00005722597 1637682660289 3.1 GB
EGAF00005722598 1637682360205 2.5 GB
EGAF00005722599 1637681820471 1.6 GB
EGAF00005722600 1637681402836 1.6 GB
EGAF00005722601 1637681700530 1.1 GB
EGAF00005722602 1637680921446 2.2 GB
EGAF00005722603 1637680921446 1.6 GB
EGAF00005722604 1637680621984 1.8 GB
EGAF00005722605 1637682243189 1.8 GB
EGAF00005722606 1637681100375 2.2 GB
EGAF00005722607 1637682243189 2.3 GB
EGAF00005722608 1637681462526 2.2 GB
EGAF00005722609 1637683312718 7.1 GB
EGAF00005722610 1637680260968 1.0 GB
EGAF00005722611 1637682900150 4.2 GB
EGAF00005722612 1637680562454 3.0 GB
EGAF00005722613 1637682960561 4.2 GB
EGAF00005722614 1637680740689 538.2 MB
EGAF00005722615 1637681281646 2.2 GB
EGAF00005722616 1637683080337 3.3 GB
EGAF00005722617 1637681880278 1.9 GB
EGAF00005722618 1637681880278 2.0 GB
EGAF00005722619 1637680321409 2.1 GB
EGAF00005722620 1637680562454 1.1 GB
EGAF00005722621 1637681700530 2.4 GB
EGAF00005722622 1637681100375 1.9 GB
EGAF00005722623 1637682480192 5.8 GB
EGAF00005722624 1637682900150 2.2 GB
EGAF00005722625 1637681943896 2.2 GB
EGAF00005722626 1637682300259 3.0 GB
EGAF00005722627 1637682660289 3.4 GB
EGAF00005722628 1637682300259 2.3 GB
EGAF00005722629 1637681462526 777.2 MB
EGAF00005722630 1637682180460 2.3 GB
EGAF00005722631 1637680621984 2.6 GB
EGAF00005722632 1637681162685 1.3 GB
EGAF00005722633 1637681220592 2.7 GB
EGAF00005722634 1637683080337 2.8 GB
EGAF00005722635 1637681522071 2.3 GB
EGAF00005722636 1637682061822 2.7 GB
EGAF00005722637 1637680260968 2.0 GB
EGAF00005722638 1637680921446 2.7 GB
EGAF00005722639 1637681943896 2.8 GB
EGAF00005722640 1637682061822 4.3 GB
EGAF00005722641 1637682180460 2.0 GB
EGAF00005722642 1637681100375 2.6 GB
EGAF00005722643 1637681462526 2.6 GB
EGAF00005722644 1637680680199 3.0 GB
EGAF00005722645 1637681340325 2.2 GB
EGAF00005727063 1638271084841 498.7 MB
EGAF00005727064 1638271982673 797.9 MB
EGAF00005727065 1638270904610 370.5 MB
EGAF00005727066 1638271593277 452.3 MB
EGAF00005727067 1638271084841 677.7 MB
EGAF00005727068 1638270850283 562.9 MB
EGAF00005727069 1638271503738 571.4 MB
EGAF00005727070 1638271084841 491.3 MB
EGAF00005727071 1638271267337 619.3 MB
EGAF00005727072 1638271200540 293.6 MB
EGAF00005727073 1638271084841 536.9 MB
EGAF00005727074 1638271084841 490.1 MB
EGAF00005727075 1638271330674 578.2 MB
EGAF00005727076 1638271982673 543.9 MB
EGAF00005727077 1638271267337 340.3 MB
EGAF00005727078 1638271267337 471.7 MB
EGAF00005727079 1638271503738 699.4 MB
EGAF00005727080 1638271503738 551.8 MB
EGAF00005727081 1638271025539 538.1 MB
EGAF00005727082 1638271025539 423.9 MB
EGAF00005727083 1638271200540 550.7 MB
EGAF00005727084 1638271920626 786.0 MB
EGAF00005727085 1638271593277 487.5 MB
EGAF00005727086 1638272885700 838.1 MB
EGAF00005727087 1638271330674 793.0 MB
EGAF00005727088 1638271267337 503.1 MB
EGAF00005727089 1638271503738 521.3 MB
EGAF00005727090 1638271807650 399.9 MB
EGAF00005727091 1638271744129 295.3 MB
EGAF00005727092 1638271200540 371.9 MB
EGAF00005727093 1638272585994 570.6 MB
EGAF00005727094 1638271330674 513.6 MB
EGAF00005727095 1638271408124 506.5 MB
EGAF00005727096 1638272364631 488.2 MB
EGAF00005727097 1638271593277 527.1 MB
EGAF00005727098 1638271408124 595.7 MB
EGAF00005727099 1638271593277 487.1 MB
EGAF00005727100 1638271861107 615.5 MB
EGAF00005727101 1638271861107 354.0 MB
EGAF00005727102 1638271408124 513.2 MB
EGAF00005727103 1638271861107 541.0 MB
EGAF00005727104 1638271677205 514.2 MB
EGAF00005727105 1638271503738 393.3 MB
EGAF00005727106 1638271593277 423.9 MB
EGAF00005727107 1638271744129 371.6 MB
EGAF00005727108 1638271677205 526.3 MB
EGAF00005727109 1638271744129 603.9 MB
EGAF00005727110 1638272084150 510.8 MB
EGAF00005727111 1638271503738 431.9 MB
EGAF00005727112 1638271408124 243.7 MB
EGAF00005727113 1638272286172 538.3 MB
EGAF00005727114 1638271807650 402.2 MB
EGAF00005727115 1638272364631 407.1 MB
EGAF00005727116 1638272585994 398.3 MB
EGAF00005727117 1638271744129 467.9 MB
EGAF00005727118 1638271920626 542.5 MB
EGAF00005727119 1638271593277 353.4 MB
EGAF00005727120 1638271503738 332.9 MB
EGAF00005727121 1638271680833 173.4 MB
EGAF00005727122 1638271744129 153.6 MB
EGAF00005727123 1638271920626 566.5 MB
EGAF00005727124 1638272585994 524.1 MB
EGAF00005727125 1638272084150 487.7 MB
EGAF00005727126 1638273122527 735.5 MB
EGAF00005727127 1638272364631 583.1 MB
EGAF00005727128 1638271744129 156.4 MB
335 Files (624.7 GB)