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Lung cancer, healthy control and non-cancerous plasma cfDNA samples

The dataset contains 106 lung cancer, 12 healthy control and 11 non-cancerous lesion plasma cfDNA sample. Shallow WGS was performed on an Illumina Novaseq S4 PE150bp. Samples are provided as raw reads without any prior processing.

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DAP for FMseq_EGA_002

Data Access Policy Form – Mouliere Lab, Vrije University Medical Center Amsterdam These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. The current text is just the first part of the DAP. Please download and fill in the full version from the link provided! Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: The Amsterdam University Medical Center, location VUmc, De Boelelaan 1118, 1081 HZ Amsterdam; represented by Florent C. Mouliere, and contactable by email at f.mouliere@amsterdamumc.nl or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number or hospital number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of the Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree to acknowledge in any Publication and Communications based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. You recognize that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organizational measures against the unauthorized or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A You acknowledge and agree that the Data is pseudonymized Data and that You will become the Data Controller on receipt of such Data. You will only process the Data for the purpose of carrying out the Project. You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. You agree that You shall not analyze or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data. Schedule B For schedule B please download the full version of this DAP from the link provided.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005578504 1635769380313 1.6 GB
EGAF00005578505 1635769020269 1.6 GB
EGAF00005578506 1635762780283 4.9 GB
EGAF00005578507 1635769500246 5.1 GB
EGAF00005578508 1635763440178 4.2 GB
EGAF00005578509 1635763620165 4.3 GB
EGAF00005578510 1635770640138 10.5 GB
EGAF00005578511 1635764160211 10.8 GB
EGAF00005578512 1635762420226 2.0 GB
EGAF00005578513 1635762060114 2.1 GB
EGAF00005578514 1635763620165 4.4 GB
EGAF00005578515 1635763260278 4.6 GB
EGAF00005578516 1635762120102 4.6 GB
EGAF00005578517 1635769620273 4.7 GB
EGAF00005578518 1635761880240 1.7 GB
EGAF00005578519 1635763260278 1.7 GB
EGAF00005578520 1635769140497 4.4 GB
EGAF00005578521 1635763740137 4.5 GB
EGAF00005578522 1635762960434 3.2 GB
EGAF00005578523 1635769560245 3.3 GB
EGAF00005578524 1635768900389 1.3 GB
EGAF00005578525 1635769380313 1.4 GB
EGAF00005578526 1635762120102 2.3 GB
EGAF00005578527 1635761700961 2.4 GB
EGAF00005578528 1635769860159 7.2 GB
EGAF00005578529 1635769860159 7.5 GB
EGAF00005578530 1635761820357 1.7 GB
EGAF00005578531 1635762480293 1.8 GB
EGAF00005578532 1635764160211 5.8 GB
EGAF00005578533 1635761640147 5.9 GB
EGAF00005578534 1635762720169 7.5 GB
EGAF00005578535 1635762480293 7.8 GB
EGAF00005578536 1635770400109 14.1 GB
EGAF00005578537 1635765120024 14.7 GB
EGAF00005578538 1635762000326 2.8 GB
EGAF00005578539 1635769140497 2.9 GB
EGAF00005578540 1635761940178 2.9 GB
EGAF00005578541 1635762720169 3.0 GB
EGAF00005578542 1635763140396 3.5 GB
EGAF00005578543 1635762960434 3.6 GB
EGAF00005578544 1635769080383 1.4 GB
EGAF00005578545 1635768900389 1.5 GB
EGAF00005578546 1635762120102 2.6 GB
EGAF00005578547 1635762660217 2.7 GB
EGAF00005578548 1635769920056 3.5 GB
EGAF00005578549 1635763320159 3.6 GB
EGAF00005578550 1635762480293 4.0 GB
EGAF00005578551 1635769440112 4.1 GB
EGAF00005578552 1635769020269 1.3 GB
EGAF00005578553 1635762780283 1.4 GB
EGAF00005578554 1635770220037 4.8 GB
EGAF00005578555 1635763200285 5.0 GB
EGAF00005578556 1635769500246 3.7 GB
EGAF00005578557 1635769920056 3.8 GB
EGAF00005578558 1635762780283 2.3 GB
EGAF00005578559 1635763140396 2.4 GB
EGAF00005578560 1635769200214 1.8 GB
EGAF00005578561 1635762180401 1.9 GB
EGAF00005578562 1635764160211 9.3 GB
EGAF00005578563 1635764400170 9.7 GB
EGAF00005578564 1635768900389 3.7 GB
EGAF00005578565 1635769140497 3.8 GB
EGAF00005578566 1635763140396 3.7 GB
EGAF00005578567 1635763380276 3.9 GB
EGAF00005578568 1635763920145 8.7 GB
EGAF00005578569 1635763800086 9.1 GB
EGAF00005578570 1635784200366 1.7 GB
EGAF00005578571 1635769320328 1.7 GB
EGAF00005578572 1635764640202 12.1 GB
EGAF00005578573 1635765120024 12.6 GB
EGAF00005578574 1635769200214 1.4 GB
EGAF00005578575 1635769140497 1.4 GB
EGAF00005578576 1635764520080 5.9 GB
EGAF00005578577 1635770040117 6.2 GB
EGAF00005578578 1635763020191 2.6 GB
EGAF00005578579 1635763680282 2.7 GB
EGAF00005578580 1635768960201 1.2 GB
EGAF00005578581 1635768840467 1.3 GB
EGAF00005578582 1635763020191 4.3 GB
EGAF00005578583 1635769200214 4.4 GB
EGAF00005578584 1635763080313 4.9 GB
EGAF00005578585 1635762960434 5.1 GB
EGAF00005578586 1635764040130 3.3 GB
EGAF00005578587 1635761880240 3.4 GB
EGAF00005578588 1635769440112 6.4 GB
EGAF00005578589 1635763500391 6.6 GB
EGAF00005578590 1635769500246 4.0 GB
EGAF00005578591 1635763620165 4.1 GB
EGAF00005578592 1635763500391 8.6 GB
EGAF00005578593 1635764040130 8.9 GB
EGAF00005578594 1635763140396 3.3 GB
EGAF00005578595 1635769320328 3.4 GB
EGAF00005578596 1635762240227 1.6 GB
EGAF00005578597 1635762840080 1.7 GB
EGAF00005578598 1635762180401 1.3 GB
EGAF00005578599 1635762780283 1.4 GB
EGAF00005578600 1635763500391 4.4 GB
EGAF00005578601 1635769260377 4.5 GB
EGAF00005578602 1635769380313 3.6 GB
EGAF00005578603 1635762840080 3.8 GB
EGAF00005578604 1635769140497 2.1 GB
EGAF00005578605 1635762240227 2.2 GB
EGAF00005578606 1635769320328 2.2 GB
EGAF00005578607 1635762840080 2.3 GB
EGAF00005578608 1635763500391 8.7 GB
EGAF00005578609 1635762660217 9.0 GB
EGAF00005578610 1635762960434 5.0 GB
EGAF00005578611 1635770100183 5.1 GB
EGAF00005578612 1635768840467 1.4 GB
EGAF00005578613 1635769080382 1.4 GB
EGAF00005578614 1635762780283 8.5 GB
EGAF00005578615 1635769980112 8.8 GB
EGAF00005578616 1635761520219 3.8 GB
EGAF00005578617 1635784260388 4.0 GB
EGAF00005578618 1635762600350 5.6 GB
EGAF00005578619 1635762300344 5.9 GB
EGAF00005578620 1635769680121 7.6 GB
EGAF00005578621 1635763440177 7.9 GB
EGAF00005578622 1635769860159 11.8 GB
EGAF00005578623 1635764469391 12.3 GB
EGAF00005578624 1635763080313 12.5 GB
EGAF00005578625 1635763260278 13.0 GB
EGAF00005578626 1635769260377 5.6 GB
EGAF00005578627 1635769740151 5.9 GB
EGAF00005578628 1635765060017 17.5 GB
EGAF00005578629 1635765360016 18.2 GB
EGAF00005578630 1635763560198 9.8 GB
EGAF00005578631 1635764640202 10.1 GB
EGAF00005578632 1635769020269 2.9 GB
EGAF00005578633 1635762600350 3.0 GB
EGAF00005578634 1635763140396 7.7 GB
EGAF00005578635 1635763560198 8.0 GB
EGAF00005578636 1635762900430 4.2 GB
EGAF00005578637 1635762900430 4.3 GB
EGAF00005578638 1635769740151 5.6 GB
EGAF00005578639 1635764100050 5.8 GB
EGAF00005578640 1635764220231 7.5 GB
EGAF00005578641 1635764820032 7.8 GB
EGAF00005578642 1635762780283 4.1 GB
EGAF00005578643 1635762960434 4.2 GB
EGAF00005578644 1635763860285 5.5 GB
EGAF00005578645 1635769620273 5.8 GB
EGAF00005578646 1635763380276 4.0 GB
EGAF00005578647 1635762000326 4.1 GB
EGAF00005578648 1635770460109 6.7 GB
EGAF00005578649 1635763920145 6.9 GB
EGAF00005578650 1635769020269 1.1 GB
EGAF00005578651 1635769020269 1.1 GB
EGAF00005578652 1635762660217 1.7 GB
EGAF00005578653 1635762300344 1.8 GB
EGAF00005578654 1635763140396 2.4 GB
EGAF00005578655 1635762300344 2.5 GB
EGAF00005578656 1635784920155 4.2 GB
EGAF00005578657 1635763740137 4.3 GB
EGAF00005578658 1635764400170 10.1 GB
EGAF00005578659 1635765000019 10.5 GB
EGAF00005578660 1635770100183 4.6 GB
EGAF00005578661 1635762000326 4.7 GB
EGAF00005578662 1635763200285 2.8 GB
EGAF00005578663 1635769860159 3.0 GB
EGAF00005578664 1635762720169 2.3 GB
EGAF00005578665 1635762300344 2.4 GB
EGAF00005578666 1635762480293 3.0 GB
EGAF00005578667 1635762180401 3.1 GB
EGAF00005578668 1635768960201 2.0 GB
EGAF00005578669 1635768900389 2.1 GB
EGAF00005578670 1635762720169 6.2 GB
EGAF00005578671 1635764040130 6.4 GB
EGAF00005578672 1635770040117 3.0 GB
EGAF00005578673 1635769860159 3.1 GB
EGAF00005578674 1635763920145 8.0 GB
EGAF00005578675 1635764820032 8.3 GB
EGAF00005578676 1635762420226 2.3 GB
EGAF00005578677 1635762660216 2.4 GB
EGAF00005578678 1635761760343 3.7 GB
EGAF00005578679 1635761580261 3.8 GB
EGAF00005578680 1635764040130 9.5 GB
EGAF00005578681 1635763800086 9.9 GB
EGAF00005578682 1635762600350 2.3 GB
EGAF00005578683 1635761940178 2.4 GB
EGAF00005578684 1635768960201 1.0 GB
EGAF00005578685 1635762000326 1.0 GB
EGAF00005578686 1635763740137 4.4 GB
EGAF00005578687 1635762600350 4.6 GB
EGAF00005578688 1635762300344 4.5 GB
EGAF00005578689 1635764340037 4.7 GB
EGAF00005578690 1635761760343 1.9 GB
EGAF00005578691 1635761580261 2.0 GB
EGAF00005578692 1635768960201 1.5 GB
EGAF00005578693 1635769080383 1.6 GB
EGAF00005578694 1635762180401 2.0 GB
EGAF00005578695 1635762600350 2.1 GB
EGAF00005578696 1635762300344 1.3 GB
EGAF00005578697 1635762720169 1.4 GB
EGAF00005578698 1635769200214 4.0 GB
EGAF00005578699 1635762300344 4.2 GB
EGAF00005578700 1635761820357 1.8 GB
EGAF00005578701 1635768900389 1.8 GB
EGAF00005578702 1635769020269 1.3 GB
EGAF00005578703 1635769200214 1.4 GB
EGAF00005578704 1635762240227 3.9 GB
EGAF00005578705 1635769800124 4.0 GB
EGAF00005578706 1635761940178 4.4 GB
EGAF00005578707 1635763380276 4.6 GB
EGAF00005578708 1635761580261 1.5 GB
EGAF00005578709 1635761940178 1.6 GB
EGAF00005578710 1635769740151 4.0 GB
EGAF00005578711 1635762900430 4.1 GB
EGAF00005578712 1635763140396 2.2 GB
EGAF00005578713 1635769320328 2.3 GB
EGAF00005578714 1635769260377 2.7 GB
EGAF00005578715 1635762240227 2.8 GB
EGAF00005578716 1635769140497 3.3 GB
EGAF00005578717 1635763140396 3.5 GB
EGAF00005578718 1635761640147 1.5 GB
EGAF00005578719 1635763500391 1.6 GB
EGAF00005578720 1635763020191 5.3 GB
EGAF00005578721 1635763440177 5.5 GB
EGAF00005578722 1635768840467 1.3 GB
EGAF00005578723 1635762420226 1.3 GB
EGAF00005578724 1635763560198 4.4 GB
EGAF00005578725 1635762540153 4.5 GB
EGAF00005578726 1635761880240 2.0 GB
EGAF00005578727 1635761520219 2.1 GB
EGAF00005578728 1635763380276 6.4 GB
EGAF00005578729 1635763380276 6.6 GB
EGAF00005578730 1635764280235 7.4 GB
EGAF00005578731 1635762240227 7.7 GB
EGAF00005578732 1635762780283 2.5 GB
EGAF00005578733 1635762780283 2.6 GB
EGAF00005578734 1635761880240 950.0 MB
EGAF00005578735 1635761220198 994.1 MB
EGAF00005578736 1635762660216 3.2 GB
EGAF00005578737 1635769680121 3.4 GB
EGAF00005578738 1635764520080 11.3 GB
EGAF00005578739 1635764580170 11.6 GB
EGAF00005578740 1635764040130 7.9 GB
EGAF00005578741 1635763860285 8.3 GB
EGAF00005578742 1635769140497 1.4 GB
EGAF00005578743 1635762000326 1.4 GB
EGAF00005578744 1635762900430 4.2 GB
EGAF00005578745 1635769440112 4.3 GB
EGAF00005578746 1635761520219 2.1 GB
EGAF00005578747 1635761280330 2.1 GB
EGAF00005578748 1635761220198 1.7 GB
EGAF00005578749 1635762360243 1.7 GB
EGAF00005578750 1635770160089 3.7 GB
EGAF00005578751 1635819334762 3.9 GB
EGAF00005578752 1635761820357 1.2 GB
EGAF00005578753 1635761460231 1.2 GB
EGAF00005578754 1635762060114 3.4 GB
EGAF00005578755 1635763140396 3.5 GB
EGAF00005578756 1635770100183 4.5 GB
EGAF00005578757 1635762360243 4.6 GB
EGAF00005578758 1635762660216 2.9 GB
EGAF00005578759 1635769260377 3.0 GB
EGAF00005578760 1635769320328 3.4 GB
EGAF00005578761 1635762600350 3.5 GB
258 Files (1.1 TB)