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scRNA-seq of nonhematopoietic cells in human lymph nodes and lymphoma

Single-cell count data generated by the Cellranger (10X Genomics).

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Data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom DAC for Department of Hematology, University of Tsukuba grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: DAC for Department of Hematology, University of Tsukuba and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Non-Profit Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DAC for Department of Hematology, University of Tsukuba within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify DAC for Department of Hematology, University of Tsukuba prior to any significant changes to the protocol for the Project. 14. The User Institution will notify DAC for Department of Hematology, University of Tsukuba as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DAC for Department of Hematology, University of Tsukuba may terminate this agreement for any reason by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005732 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005575871 tsv.gz 7.3 kB
EGAF00005575872 tsv.gz 304.9 kB
EGAF00005575873 mtx.gz 12.0 MB
EGAF00005742373 tsv.gz 32.6 kB
EGAF00005742375 mtx.gz 28.5 MB
EGAF00005742378 tsv.gz 34.2 kB
EGAF00005742380 mtx.gz 39.9 MB
EGAF00005742382 tsv.gz 304.9 kB
EGAF00005742383 tsv.gz 304.9 kB
EGAF00005742384 mtx.gz 63.9 MB
EGAF00005742386 tsv.gz 304.9 kB
EGAF00005742387 mtx.gz 93.8 MB
EGAF00005742388 tsv.gz 26.9 kB
EGAF00005742393 mtx.gz 53.4 MB
EGAF00005742395 tsv.gz 41.6 kB
EGAF00005742396 mtx.gz 45.7 MB
EGAF00005742399 tsv.gz 36.6 kB
EGAF00005742400 tsv.gz 32.2 kB
EGAF00005742402 mtx.gz 41.0 MB
EGAF00005742403 tsv.gz 21.6 kB
EGAF00005742404 tsv.gz 304.9 kB
EGAF00005742405 mtx.gz 28.6 MB
EGAF00005742406 tsv.gz 59.4 kB
EGAF00005742407 tsv.gz 304.9 kB
EGAF00005742408 tsv.gz 48.7 kB
EGAF00005742409 mtx.gz 98.8 MB
EGAF00005742410 tsv.gz 304.9 kB
EGAF00005742412 tsv.gz 28.2 kB
EGAF00005742413 tsv.gz 304.9 kB
EGAF00005742415 tsv.gz 55.6 kB
EGAF00005742416 tsv.gz 304.9 kB
EGAF00005742417 mtx.gz 89.2 MB
EGAF00005742419 tsv.gz 304.9 kB
EGAF00005742423 mtx.gz 61.9 MB
EGAF00005742425 tsv.gz 304.9 kB
EGAF00005742426 mtx.gz 46.5 MB
EGAF00005742428 tsv.gz 304.9 kB
EGAF00005742431 mtx.gz 64.5 MB
EGAF00005742432 tsv.gz 304.9 kB
EGAF00005742438 tsv.gz 21.6 kB
EGAF00005742440 tsv.gz 304.9 kB
EGAF00005742441 tsv.gz 304.9 kB
EGAF00005742442 mtx.gz 33.7 MB
EGAF00005742444 tsv.gz 304.9 kB
EGAF00005742446 tsv.gz 43.1 kB
EGAF00005742447 tsv.gz 304.9 kB
EGAF00005742448 mtx.gz 56.6 MB
EGAF00005742449 tsv.gz 38.2 kB
EGAF00005742450 mtx.gz 28.5 MB
EGAF00005742451 tsv.gz 304.9 kB
EGAF00005742452 tsv.gz 18.2 kB
EGAF00005742454 tsv.gz 304.9 kB
EGAF00005742457 tsv.gz 304.9 kB
EGAF00005742458 tsv.gz 25.2 kB
EGAF00005742459 mtx.gz 61.9 MB
EGAF00005742460 tsv.gz 47.6 kB
EGAF00005742461 tsv.gz 304.9 kB
EGAF00005742462 mtx.gz 90.1 MB
EGAF00005742463 tsv.gz 32.6 kB
EGAF00005742465 mtx.gz 63.9 MB
EGAF00005742466 tsv.gz 57.3 kB
EGAF00005742470 tsv.gz 304.9 kB
EGAF00005742473 tsv.gz 304.9 kB
EGAF00005742474 mtx.gz 91.6 MB
EGAF00005742476 tsv.gz 304.9 kB
EGAF00005742477 mtx.gz 53.4 MB
EGAF00005742478 tsv.gz 44.5 kB
EGAF00005742479 tsv.gz 304.9 kB
EGAF00005742480 mtx.gz 87.5 MB
69 Files (1.3 GB)