Human normal esophagus and Barrett's esophagus mtDNA sequencing
BAM files containing paired-end mtDNA sequencing data from human esophageal samples of individuals that had progressed to dysplasia or developed Barrett's esophagus (BE) post-esophagectomy. BE biopsies and the background mucosa were analysed. Each patient (JE*) has associated mtDNA sequencing data from biopsies of stroma, BE and squamous and cardia tissue. Two technical replicates, denoted "A" and "B", were analysed for each biopsy. Libraries were sequenced via the Illumina MiSeq platform v2 (Illumina, San Diego, CA, USA) 300 cycles (150 nt paired-end).
- 80 samples
- DAC: EGAC00001002266
- Technology: Illumina MiSeq
Barts Cancer Institute (Queen Mary University of London) System Access Controls Policy, Storage of Information Policy and Information Security Policy
System Access policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2020/12/DG11-System-Access-Controls-Policy-V2.0.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E Storage of Information policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2020/12/DG14-Storage-of-Information-Policy-V2.0.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E Information Security policy - https://bcinet.qmcr.qmul.ac.uk/wp-content/plugins/pdfjs-viewer-shortcode/pdfjs/web/viewer.php?file=/wp-content/uploads/2021/04/BCC-Information-Security-Policy-v3.2.pdf&dButton=true&pButton=true&oButton=false&sButton=true#zoom=auto&pagemode=none%22%20title=%22Embedded%20PDF%22%20class=%22pdfjs-iframe%22%3E%3C/iframe%3E%3C/div%3E
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005729 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005575623 | bam | 52.6 MB | ||
| EGAF00005575624 | bam | 90.9 MB | ||
| EGAF00005575625 | bam | 72.5 MB | ||
| EGAF00005575626 | bam | 60.5 MB | ||
| EGAF00005575627 | bam | 91.5 MB | ||
| EGAF00005575628 | bam | 153.3 MB | ||
| EGAF00005575629 | bam | 95.4 MB | ||
| EGAF00005575630 | bam | 78.1 MB | ||
| EGAF00005575631 | bam | 84.7 MB | ||
| EGAF00005575632 | bam | 67.2 MB | ||
| EGAF00005575633 | bam | 79.3 MB | ||
| EGAF00005575634 | bam | 97.4 MB | ||
| EGAF00005575635 | bam | 94.3 MB | ||
| EGAF00005575636 | bam | 86.7 MB | ||
| EGAF00005575637 | bam | 67.2 MB | ||
| EGAF00005575638 | bam | 42.2 MB | ||
| EGAF00005575639 | bam | 96.0 MB | ||
| EGAF00005575640 | bam | 85.3 MB | ||
| EGAF00005575641 | bam | 117.8 MB | ||
| EGAF00005575642 | bam | 74.1 MB | ||
| EGAF00005575643 | bam | 36.5 MB | ||
| EGAF00005575644 | bam | 78.3 MB | ||
| EGAF00005575645 | bam | 153.9 MB | ||
| EGAF00005575646 | bam | 117.4 MB | ||
| EGAF00005575647 | bam | 79.6 MB | ||
| EGAF00005575648 | bam | 64.7 MB | ||
| EGAF00005575649 | bam | 74.8 MB | ||
| EGAF00005575650 | bam | 48.8 MB | ||
| EGAF00005575651 | bam | 124.7 MB | ||
| EGAF00005575652 | bam | 43.9 MB | ||
| EGAF00005575653 | bam | 90.5 MB | ||
| EGAF00005575654 | bam | 95.2 MB | ||
| EGAF00005575655 | bam | 53.9 MB | ||
| EGAF00005575656 | bam | 139.5 MB | ||
| EGAF00005575657 | bam | 46.1 MB | ||
| EGAF00005575658 | bam | 67.3 MB | ||
| EGAF00005575659 | bam | 93.8 MB | ||
| EGAF00005575660 | bam | 96.4 MB | ||
| EGAF00005575661 | bam | 76.5 MB | ||
| EGAF00005575662 | bam | 100.1 MB | ||
| EGAF00005575663 | bam | 70.6 MB | ||
| EGAF00005575664 | bam | 46.5 MB | ||
| EGAF00005575665 | bam | 54.2 MB | ||
| EGAF00005575666 | bam | 70.1 MB | ||
| EGAF00005575667 | bam | 84.7 MB | ||
| EGAF00005575668 | bam | 71.0 MB | ||
| EGAF00005575669 | bam | 99.5 MB | ||
| EGAF00005575670 | bam | 57.8 MB | ||
| EGAF00005575671 | bam | 64.2 MB | ||
| EGAF00005575672 | bam | 122.7 MB | ||
| EGAF00005575673 | bam | 105.3 MB | ||
| EGAF00005575674 | bam | 106.7 MB | ||
| EGAF00005575675 | bam | 67.1 MB | ||
| EGAF00005575676 | bam | 64.6 MB | ||
| EGAF00005575677 | bam | 84.6 MB | ||
| EGAF00005575678 | bam | 105.4 MB | ||
| EGAF00005575679 | bam | 73.0 MB | ||
| EGAF00005575680 | bam | 89.0 MB | ||
| EGAF00005575681 | bam | 50.7 MB | ||
| EGAF00005575682 | bam | 107.4 MB | ||
| EGAF00005575683 | bam | 81.0 MB | ||
| EGAF00005575684 | bam | 70.7 MB | ||
| EGAF00005575685 | bam | 92.0 MB | ||
| EGAF00005575686 | bam | 82.2 MB | ||
| EGAF00005575687 | bam | 114.1 MB | ||
| EGAF00005575688 | bam | 77.7 MB | ||
| EGAF00005575689 | bam | 77.1 MB | ||
| EGAF00005575690 | bam | 65.4 MB | ||
| EGAF00005575691 | bam | 46.1 MB | ||
| EGAF00005575692 | bam | 76.6 MB | ||
| EGAF00005575693 | bam | 62.8 MB | ||
| EGAF00005575694 | bam | 82.2 MB | ||
| EGAF00005575695 | bam | 59.8 MB | ||
| EGAF00005575696 | bam | 91.0 MB | ||
| EGAF00005575697 | bam | 83.6 MB | ||
| EGAF00005575698 | bam | 157.6 MB | ||
| EGAF00005575699 | bam | 57.0 MB | ||
| EGAF00005575700 | bam | 58.6 MB | ||
| EGAF00005575701 | bam | 78.7 MB | ||
| EGAF00005575702 | bam | 223.3 MB | ||
| 80 Files (6.7 GB) | ||||