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B-ALL bone marrow and CNS xenograft RNA sequencing

This dataset includes TruSeq paired-end, total RNA sequencing data from primary B-precursor acute lymphoblastic leukaemia (B-ALL) xenografts. It comprises 43 pairs of matched bone marrow (BM) and central nervous system (CNS) human leukaemia cells from individual immunodeficient mice. Xenografts were generated from 6 patients with B-ALL and include samples taken at diagnosis and relapse from 3 of 6 patients.

Request Access

Access to data generated by UHN is made available by completing the data access agreement for review by the data access committee and will be granted to qualified investigators for appropriate use.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Data Access Committee (DAC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Principal Investigator and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. University Health Network: The University Health Network (UHN) is the largest clinical and research hospital in Canada. UHN is affiliated with the University of Toronto and is a member of the Toronto Academic Health Science Network. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the province of Ontario and PHIPA. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for The Data Access Committee Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005494011 1633116034220 1.6 GB
EGAF00005494012 1633115623019 1.7 GB
EGAF00005494013 1633115678556 1.6 GB
EGAF00005494014 1633129997131 1.9 GB
EGAF00005494015 1633116311702 1.6 GB
EGAF00005494016 1633116311702 1.8 GB
EGAF00005494017 1633115888945 1.6 GB
EGAF00005494018 1633115794089 1.7 GB
EGAF00005494019 1633115678556 1.6 GB
EGAF00005494020 1633115975380 1.6 GB
EGAF00005494021 1633115678556 1.7 GB
EGAF00005494022 1633129997132 1.8 GB
EGAF00005494023 1633115623019 1.5 GB
EGAF00005494024 1633116034220 1.7 GB
EGAF00005494025 1633129997132 1.4 GB
EGAF00005494026 1633129997132 1.5 GB
EGAF00005494027 1633129997131 1.4 GB
EGAF00005494028 1633115888945 1.5 GB
EGAF00005494029 1633116311702 1.9 GB
EGAF00005494030 1633116371966 2.1 GB
EGAF00005494031 1633115794089 1.9 GB
EGAF00005494032 1633116067087 2.1 GB
EGAF00005494033 1633130058029 1.5 GB
EGAF00005494034 1633115853884 1.7 GB
EGAF00005494035 1633115623019 1.6 GB
EGAF00005494036 1633129925506 1.7 GB
EGAF00005494037 1633115377199 1.7 GB
EGAF00005494038 1633115317210 1.7 GB
EGAF00005494039 1633115408634 1.7 GB
EGAF00005494040 1633116247738 1.9 GB
EGAF00005494041 1633116067087 1.7 GB
EGAF00005494042 1633115709417 1.9 GB
EGAF00005494043 1633115975380 2.0 GB
EGAF00005494044 1633115493471 2.2 GB
EGAF00005494045 1633115527057 1.6 GB
EGAF00005494046 1633116067087 1.8 GB
EGAF00005494047 1633116371966 2.2 GB
EGAF00005494048 1633116427579 2.5 GB
EGAF00005494049 1633115709417 4.0 GB
EGAF00005494050 1633116034220 4.0 GB
EGAF00005494051 1633115853884 1.3 GB
EGAF00005494052 1633129997131 1.5 GB
EGAF00005494053 1633115623019 1.9 GB
EGAF00005494054 1633129997132 2.1 GB
EGAF00005494055 1633115975380 1.6 GB
EGAF00005494056 1633115794089 1.8 GB
EGAF00005494057 1633115975380 2.0 GB
EGAF00005494058 1633115975380 2.2 GB
EGAF00005494059 1633115623019 1.8 GB
EGAF00005494060 1633115623018 1.8 GB
EGAF00005494061 1633129997132 1.5 GB
EGAF00005494062 1633116034220 1.6 GB
EGAF00005494063 1633115888945 1.8 GB
EGAF00005494064 1633115623018 2.1 GB
EGAF00005494065 1633115853884 1.6 GB
EGAF00005494066 1633115623018 1.7 GB
EGAF00005494067 1633115888945 1.5 GB
EGAF00005494068 1633129997131 1.7 GB
EGAF00005494069 1633115888945 1.4 GB
EGAF00005494070 1633129997131 1.6 GB
EGAF00005494071 1633116216471 1.5 GB
EGAF00005494072 1633115623018 1.7 GB
EGAF00005494073 1633116525571 3.4 GB
EGAF00005494074 1633116371966 3.4 GB
EGAF00005494075 1633115623018 1.9 GB
EGAF00005494076 1633115493471 2.1 GB
EGAF00005494077 1633116034220 1.6 GB
EGAF00005494078 1633116216471 1.7 GB
EGAF00005494079 1633116525571 3.5 GB
EGAF00005494080 1633116371966 3.5 GB
EGAF00005494081 1633115853883 2.7 GB
EGAF00005494082 1633115794089 2.7 GB
EGAF00005494083 1633115377199 1.8 GB
EGAF00005494084 1633115623018 2.0 GB
EGAF00005494085 1633115794089 1.8 GB
EGAF00005494086 1633130058029 2.0 GB
EGAF00005494087 1633130058029 1.9 GB
EGAF00005494088 1633116371966 2.1 GB
EGAF00005494089 1633129997131 1.8 GB
EGAF00005494090 1633129997131 2.0 GB
EGAF00005494091 1633115623018 1.6 GB
EGAF00005494092 1633115377199 1.8 GB
EGAF00005494093 1633115975380 1.8 GB
EGAF00005494094 1633115527057 2.0 GB
EGAF00005494095 1633116067087 1.7 GB
EGAF00005494096 1633144385996 1.9 GB
EGAF00005494097 1633116247738 1.6 GB
EGAF00005494098 1633129997131 1.8 GB
EGAF00005494099 1633115678556 1.5 GB
EGAF00005494100 1633115709416 1.6 GB
EGAF00005494101 1633116216471 1.4 GB
EGAF00005494102 1633115493471 1.6 GB
EGAF00005494103 1633115888945 1.4 GB
EGAF00005494104 1633115408634 1.6 GB
EGAF00005494105 1633115408633 1.5 GB
EGAF00005494106 1633116311702 1.7 GB
EGAF00005494107 1633115853883 1.5 GB
EGAF00005494108 1633130058029 1.6 GB
EGAF00005494109 1633115623018 1.7 GB
EGAF00005494110 1633130058029 2.0 GB
EGAF00005494111 1633116067087 1.5 GB
EGAF00005494112 1633116067087 1.6 GB
EGAF00005494113 1633116067087 1.8 GB
EGAF00005494114 1633129997131 1.9 GB
EGAF00005494115 1633115623018 1.7 GB
EGAF00005494116 1633115408633 1.9 GB
EGAF00005494117 1633115678556 1.6 GB
EGAF00005494118 1633129997131 1.8 GB
EGAF00005494119 1633116216471 1.9 GB
EGAF00005494120 1633115794089 2.0 GB
EGAF00005494121 1633115975380 1.7 GB
EGAF00005494122 1633115623018 1.9 GB
EGAF00005494123 1633115678556 2.0 GB
EGAF00005494124 1633116128847 2.2 GB
EGAF00005494125 1633115317210 1.8 GB
EGAF00005494126 1633115623018 2.0 GB
EGAF00005494127 1633115623018 1.7 GB
EGAF00005494128 1633115888945 1.9 GB
EGAF00005494129 1633115678556 1.5 GB
EGAF00005494130 1633115794089 1.6 GB
EGAF00005494131 1633115888945 1.9 GB
EGAF00005494132 1633116216471 2.1 GB
EGAF00005494133 1633115317210 1.8 GB
EGAF00005494134 1633116128847 2.0 GB
EGAF00005494135 1633115623018 1.6 GB
EGAF00005494136 1633115888945 1.8 GB
EGAF00005494137 1633115678556 1.8 GB
EGAF00005494138 1633129997131 2.0 GB
EGAF00005494139 1633116034220 1.8 GB
EGAF00005494140 1633116311702 2.0 GB
EGAF00005494141 1633115678556 1.6 GB
EGAF00005494142 1633116067087 1.8 GB
EGAF00005494143 1633130118522 3.3 GB
EGAF00005494144 1633116525571 3.4 GB
EGAF00005494145 1633115975380 2.0 GB
EGAF00005494146 1633115853884 2.2 GB
EGAF00005494147 1633115678556 1.8 GB
EGAF00005494148 1633115975380 2.1 GB
EGAF00005494149 1633116247738 1.9 GB
EGAF00005494150 1633115317210 2.0 GB
EGAF00005494151 1633115317210 2.3 GB
EGAF00005494152 1633116216471 2.6 GB
EGAF00005494153 1633115527057 1.5 GB
EGAF00005494154 1633129997131 1.7 GB
EGAF00005494155 1633116247738 1.7 GB
EGAF00005494156 1633115377199 1.9 GB
EGAF00005494157 1633115853884 1.8 GB
EGAF00005494158 1633115709417 1.9 GB
EGAF00005494159 1633115794089 1.8 GB
EGAF00005494160 1633130058029 2.0 GB
EGAF00005494161 1633115975380 1.9 GB
EGAF00005494162 1633115623018 2.2 GB
EGAF00005494163 1633116525571 3.0 GB
EGAF00005494164 1633116034220 3.1 GB
EGAF00005494165 1633115794089 1.7 GB
EGAF00005494166 1633130058029 1.9 GB
EGAF00005494167 1633115527057 1.7 GB
EGAF00005494168 1633129997131 1.9 GB
EGAF00005494169 1633115678556 1.6 GB
EGAF00005494170 1633115709417 1.8 GB
EGAF00005494171 1633115623018 1.7 GB
EGAF00005494172 1633116034220 1.8 GB
EGAF00005494173 1633115794089 2.0 GB
EGAF00005494174 1633115975380 2.2 GB
EGAF00005494175 1633116034220 1.5 GB
EGAF00005494176 1633115678556 1.8 GB
EGAF00005494177 1633115377199 1.7 GB
EGAF00005494178 1633115678556 1.9 GB
EGAF00005494179 1633115623018 1.7 GB
EGAF00005494180 1633115975380 1.9 GB
EGAF00005494181 1633116216471 1.7 GB
EGAF00005494182 1633116247738 1.8 GB
172 Files (326.1 GB)