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Transcriptome sequencing of hepatocellular carcinoma biopsies (TACE study)

Illumina-based RNA-Seq analysis of 93 liver samples. Biopsies of tumors and non-tumor tissues are included. Samples are stratified by response and non-response to TACE treatment.

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Data access policy for MERiC

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom The MERiC consortium grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The MERiC consortium and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The MERiC consortium: The MERiC consortium is a consortium headed by Prof Michael N Hall (Biozentrum, University of Basel), Prof Markus H Heim (Department of Biomedicine, University of Basel), Prof Gerhard Christofori (Department of Biomedicine, University of Basel) and Prof Niko Beerenwinkel (Department of Biosystems Science and Engineering, ETH Zurich). 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify The MERiC consortium within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify The MERiC consortium prior to any significant changes to the protocol for the Project. 14. The User Institution will notify The MERiC consortium as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The MERiC consortium may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than The MERiC consortium. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Switzerland and shall be subject to the exclusive jurisdiction of the Swiss courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005490543 1632932413536 5.3 GB
EGAF00005490544 1632944956146 3.8 GB
EGAF00005490545 1632935253895 3.8 GB
EGAF00005490546 1632927606446 4.3 GB
EGAF00005490547 1632928456405 5.7 GB
EGAF00005490548 1632932669173 2.9 GB
EGAF00005490549 1632934749741 6.1 GB
EGAF00005490550 1632936619658 4.4 GB
EGAF00005490551 1632943928177 7.6 GB
EGAF00005490552 1632931542740 6.1 GB
EGAF00005490553 1632930556545 9.0 GB
EGAF00005490554 1632939730736 5.6 GB
EGAF00005490555 1632934987330 7.7 GB
EGAF00005490556 1632931984983 3.1 GB
EGAF00005490557 1632929097868 3.8 GB
EGAF00005490558 bam 6.2 GB
EGAF00005490559 1632932182820 4.4 GB
EGAF00005490560 1632942151285 5.1 GB
EGAF00005490561 1632931542740 4.0 GB
EGAF00005490562 1632943184598 6.9 GB
EGAF00005490563 1632937090252 7.7 GB
EGAF00005490564 bam 6.4 GB
EGAF00005490565 1632933844767 4.2 GB
EGAF00005490566 1632950821670 9.1 GB
EGAF00005490567 bam 107.6 GB
EGAF00005490568 1632938287047 8.6 GB
EGAF00005490569 1632955373462 6.7 GB
EGAF00005490570 1632950821670 9.4 GB
EGAF00005490571 1632937809796 5.3 GB
EGAF00005490572 1632934033738 5.9 GB
EGAF00005490573 1632944180315 5.8 GB
EGAF00005490574 bam 6.3 GB
EGAF00005490575 1632943928177 9.0 GB
EGAF00005490576 1632934325525 8.8 GB
EGAF00005490577 1632935648561 5.0 GB
EGAF00005490578 1632937090252 4.1 GB
EGAF00005490579 1632937090252 12.3 GB
EGAF00005490580 bam 5.6 GB
EGAF00005490581 1632952022007 7.3 GB
EGAF00005490582 1632935253895 5.8 GB
EGAF00005490583 1632950292450 7.6 GB
EGAF00005490584 1632951781478 6.3 GB
EGAF00005490585 1632945781331 5.3 GB
EGAF00005490586 1632946366959 5.9 GB
EGAF00005490587 1632944683821 4.5 GB
EGAF00005490588 1632935460391 3.7 GB
EGAF00005490589 bam 6.2 GB
EGAF00005490590 1632950292450 6.7 GB
EGAF00005490591 1632938046395 7.1 GB
EGAF00005490592 1632949989736 3.9 GB
EGAF00005490593 1632934749741 4.3 GB
EGAF00005490594 1632942523787 4.2 GB
EGAF00005490595 1632946951096 6.2 GB
EGAF00005490596 1632938490890 4.7 GB
EGAF00005490597 1632936366072 5.6 GB
EGAF00005490598 1632938792093 3.0 GB
EGAF00005490599 bam 6.5 GB
EGAF00005490600 1632939006516 5.5 GB
EGAF00005490601 1632944431439 6.9 GB
EGAF00005490602 1632941232094 4.8 GB
EGAF00005490603 1632935648561 3.9 GB
EGAF00005490604 1632939730736 10.4 GB
EGAF00005490605 1632945257992 4.1 GB
EGAF00005490606 1632935926396 4.0 GB
EGAF00005490607 bam 5.7 GB
EGAF00005490608 1632937809796 4.1 GB
EGAF00005490609 1632935648561 4.9 GB
EGAF00005490610 1632946366959 4.0 GB
EGAF00005490611 1632948634666 4.7 GB
EGAF00005490612 1632935253896 4.6 GB
EGAF00005490613 1632935253896 3.9 GB
EGAF00005490614 1632944683821 4.2 GB
EGAF00005490615 1632950572586 3.8 GB
EGAF00005490616 1632935648562 3.6 GB
EGAF00005490617 1632939730736 4.0 GB
EGAF00005490618 1632946366959 4.1 GB
EGAF00005490619 1632940147218 6.7 GB
EGAF00005490620 1632942895548 9.2 GB
EGAF00005490621 1632953532681 5.3 GB
EGAF00005490622 1632944431439 4.9 GB
EGAF00005490623 1632939248044 6.0 GB
EGAF00005490624 1632939959683 4.4 GB
EGAF00005490625 1632939064782 5.0 GB
EGAF00005490626 1632941471473 5.3 GB
EGAF00005490627 1632937332209 4.7 GB
EGAF00005490628 1632938287047 4.7 GB
EGAF00005490629 1632942523787 6.9 GB
EGAF00005490630 1632944956146 5.8 GB
EGAF00005490631 1632937332209 6.4 GB
EGAF00005490632 1632941041084 6.6 GB
EGAF00005490633 1632944956146 6.0 GB
EGAF00005490634 bam 6.8 GB
EGAF00005490635 1632944180315 4.5 GB
93 Files (628.6 GB)