IMCISION RNAseq
RNA sequencing of 32 primary head and neck squamous cell carcinoma (HNSCC) samples prior to treatment with neoadjuvant anti-PD-1 (n=6) or anti-PD-1 + anti-CTLA-4 (n=26) immunotherapy, and 30 paired on-treatment HNSCC samples (i.e. after neoadjuvant immunotherapy). RNA quantity used: 10ng. Library Preparation Kit: SMART Stranded Total RNA Seq Kit (Takara). Sequencing parameters: NovaSeq 6000, 2x 100 bp. File type: fastQ
- 62 samples
- DAC: EGAC00001002231
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute
Netherlands Cancer Institute
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005482529 | 1631810863266 | 2.2 GB | ||
| EGAF00005482530 | 1631826008437 | 2.3 GB | ||
| EGAF00005482531 | 1631835573700 | 2.3 GB | ||
| EGAF00005482532 | 1631810863266 | 2.3 GB | ||
| EGAF00005482533 | 1631810316764 | 3.1 GB | ||
| EGAF00005482534 | 1631814388511 | 3.2 GB | ||
| EGAF00005482543 | 1631828222868 | 2.5 GB | ||
| EGAF00005482544 | 1631812805765 | 2.4 GB | ||
| EGAF00005482547 | 1631826960908 | 3.0 GB | ||
| EGAF00005482548 | 1631837585599 | 3.0 GB | ||
| EGAF00005482549 | 1631838984608 | 3.0 GB | ||
| EGAF00005482550 | 1631812086040 | 3.0 GB | ||
| EGAF00005482559 | 1631810316764 | 3.1 GB | ||
| EGAF00005482560 | 1631836037037 | 3.1 GB | ||
| EGAF00005482561 | 1631862965828 | 2.7 GB | ||
| EGAF00005482562 | 1631809526345 | 2.7 GB | ||
| EGAF00005482565 | 1631829071787 | 2.9 GB | ||
| EGAF00005482566 | 1631830816429 | 2.9 GB | ||
| EGAF00005482573 | 1631848715227 | 2.7 GB | ||
| EGAF00005482574 | 1631811894068 | 2.7 GB | ||
| EGAF00005482579 | 1631811399800 | 2.2 GB | ||
| EGAF00005482580 | 1631835573700 | 2.2 GB | ||
| EGAF00005482583 | 1631813132197 | 2.7 GB | ||
| EGAF00005482584 | 1631826778449 | 2.7 GB | ||
| EGAF00005482589 | 1631812774722 | 3.0 GB | ||
| EGAF00005482590 | 1631813302932 | 3.1 GB | ||
| EGAF00005482593 | 1631834595042 | 2.2 GB | ||
| EGAF00005482594 | 1631849930796 | 2.2 GB | ||
| EGAF00005482595 | 1631829304387 | 3.1 GB | ||
| EGAF00005482596 | 1631827747078 | 3.1 GB | ||
| EGAF00005482597 | 1631810678430 | 2.2 GB | ||
| EGAF00005482598 | 1631834595042 | 2.1 GB | ||
| EGAF00005482599 | 1631826354804 | 2.1 GB | ||
| EGAF00005482600 | 1631813704200 | 2.1 GB | ||
| EGAF00005482607 | 1631826354804 | 2.7 GB | ||
| EGAF00005482608 | 1631811399801 | 2.7 GB | ||
| EGAF00005482613 | 1631809357104 | 2.5 GB | ||
| EGAF00005482614 | 1631811581792 | 2.6 GB | ||
| EGAF00005482615 | 1631813856160 | 2.4 GB | ||
| EGAF00005482616 | 1631810316764 | 2.4 GB | ||
| EGAF00005482617 | 1631809707554 | 2.3 GB | ||
| EGAF00005482618 | 1631815108400 | 2.3 GB | ||
| EGAF00005482637 | 1631814752356 | 2.4 GB | ||
| EGAF00005482638 | 1631810500042 | 2.4 GB | ||
| EGAF00005482639 | 1631826354804 | 2.6 GB | ||
| EGAF00005482640 | 1631811581792 | 2.7 GB | ||
| EGAF00005482641 | 1631849212014 | 2.6 GB | ||
| EGAF00005482642 | 1631836325232 | 2.6 GB | ||
| EGAF00005482649 | 1631827146272 | 2.6 GB | ||
| EGAF00005482650 | 1631812965975 | 2.7 GB | ||
| EGAF00005482651 | 1631850161930 | 2.9 GB | ||
| EGAF00005482652 | 1631835808553 | 2.9 GB | ||
| EGAF00005482653 | 1631814388511 | 2.7 GB | ||
| EGAF00005482654 | 1631850161930 | 2.8 GB | ||
| EGAF00005482655 | 1631814388511 | 2.8 GB | ||
| EGAF00005482656 | 1631835808553 | 2.8 GB | ||
| EGAF00005482663 | 1631826550306 | 2.4 GB | ||
| EGAF00005482664 | 1631849703881 | 2.4 GB | ||
| EGAF00005482665 | 1631849466302 | 3.1 GB | ||
| EGAF00005482666 | 1631827380940 | 3.1 GB | ||
| EGAF00005482669 | 1631834363775 | 2.0 GB | ||
| EGAF00005482670 | 1631825622224 | 2.1 GB | ||
| EGAF00005482671 | 1631834851092 | 2.6 GB | ||
| EGAF00005482672 | 1631817157951 | 2.6 GB | ||
| EGAF00005482673 | 1631818778162 | 2.9 GB | ||
| EGAF00005482674 | 1631830624820 | 2.8 GB | ||
| EGAF00005482687 | 1631812609961 | 2.7 GB | ||
| EGAF00005482688 | 1631849930796 | 2.7 GB | ||
| EGAF00005482693 | 1631816083118 | 3.6 GB | ||
| EGAF00005482694 | 1631829495402 | 3.7 GB | ||
| EGAF00005482695 | 1631811399800 | 3.1 GB | ||
| EGAF00005482696 | 1631828222868 | 3.1 GB | ||
| EGAF00005482709 | 1631830212111 | 2.5 GB | ||
| EGAF00005482710 | 1631811894067 | 2.6 GB | ||
| EGAF00005482711 | 1631826354804 | 2.3 GB | ||
| EGAF00005482712 | 1631827747078 | 2.3 GB | ||
| EGAF00005482713 | 1631811894067 | 2.7 GB | ||
| EGAF00005482714 | 1631837585600 | 2.8 GB | ||
| EGAF00005482715 | 1631811425948 | 3.0 GB | ||
| EGAF00005482716 | 1631827380940 | 3.0 GB | ||
| EGAF00005482717 | 1631816431656 | 2.8 GB | ||
| EGAF00005482718 | 1631816083118 | 2.9 GB | ||
| EGAF00005482719 | 1631826354804 | 2.7 GB | ||
| EGAF00005482720 | 1631814029056 | 2.7 GB | ||
| EGAF00005482723 | 1631817527904 | 2.3 GB | ||
| EGAF00005482724 | 1631849225505 | 2.3 GB | ||
| EGAF00005482727 | 1631818246427 | 2.5 GB | ||
| EGAF00005482728 | 1631826960908 | 2.5 GB | ||
| EGAF00005482731 | 1631828222868 | 3.0 GB | ||
| EGAF00005482732 | 1631814752356 | 3.0 GB | ||
| EGAF00005482733 | 1631814388511 | 2.5 GB | ||
| EGAF00005482734 | 1631827747079 | 2.6 GB | ||
| EGAF00005482735 | 1631828415648 | 3.5 GB | ||
| EGAF00005482736 | 1631813495923 | 3.6 GB | ||
| EGAF00005482737 | 1631811209497 | 2.9 GB | ||
| EGAF00005482738 | 1631830624820 | 2.9 GB | ||
| EGAF00005482739 | 1631814752356 | 2.2 GB | ||
| EGAF00005482740 | 1631813524851 | 2.2 GB | ||
| EGAF00005482741 | 1631811209497 | 3.2 GB | ||
| EGAF00005482742 | 1631838280583 | 3.2 GB | ||
| EGAF00005482743 | 1631835573700 | 2.5 GB | ||
| EGAF00005482744 | 1631827747079 | 2.5 GB | ||
| EGAF00005482745 | 1631863185390 | 2.5 GB | ||
| EGAF00005482746 | 1631826008437 | 2.5 GB | ||
| EGAF00005482747 | 1631810120258 | 2.7 GB | ||
| EGAF00005482748 | 1631836769680 | 2.7 GB | ||
| EGAF00005482749 | 1631830624820 | 2.8 GB | ||
| EGAF00005482750 | 1631815397409 | 2.8 GB | ||
| EGAF00005482751 | 1631812965975 | 2.7 GB | ||
| EGAF00005482752 | 1631828000327 | 2.8 GB | ||
| EGAF00005482753 | 1631827564228 | 3.2 GB | ||
| EGAF00005482754 | 1631828000328 | 3.2 GB | ||
| EGAF00005482767 | 1631816255960 | 2.9 GB | ||
| EGAF00005482768 | 1631830624820 | 2.9 GB | ||
| EGAF00005482769 | 1631828640859 | 3.2 GB | ||
| EGAF00005482770 | 1631828000327 | 3.2 GB | ||
| EGAF00005482771 | 1631815397409 | 3.4 GB | ||
| EGAF00005482772 | 1631814929249 | 3.5 GB | ||
| EGAF00005482773 | 1631831290031 | 2.8 GB | ||
| EGAF00005482774 | 1631828827160 | 2.9 GB | ||
| EGAF00005482775 | 1631814929249 | 2.6 GB | ||
| EGAF00005482776 | 1631827146272 | 2.7 GB | ||
| EGAF00005482777 | 1631814216970 | 2.9 GB | ||
| EGAF00005482778 | 1631809899043 | 2.9 GB | ||
| 124 Files (338.0 GB) | ||||