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Neuroblastoma patient Total RNA Seq data

Tumor Total RNA Seq data of primary neuroblastomas. This is an update of the „Berlin Neuroblastoma Dataset” (EGAS00001004022). This data was used for the analysis of circular RNA expression and regulation in neuroblastoma.

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Data access policy to access neuroblastoma dataset

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Berlin Neuroblastoma Cohort DAC (Prof. Dr. Schulte) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Prof. Dr. Schulte and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. DAC: The Berlin Neuroblastoma Cohort DAC Prof. Dr. Schulte: Department of Pediatric Oncology, Charite Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the following Publication Policy: In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with the Berlin Neuroblastoma Cohort DAC. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Prof. Dr. Schulte. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the Federal Republic of Germany.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005478153 1631678681349 23.9 GB
EGAF00005478154 1631677802794 25.6 GB
EGAF00005478155 1631649125947 8.9 GB
EGAF00005478156 1631638084422 9.2 GB
EGAF00005478157 1631653636452 8.4 GB
EGAF00005478158 1631641154761 8.3 GB
EGAF00005478159 1631642361615 8.8 GB
EGAF00005478160 1631635223021 9.4 GB
EGAF00005478161 1631636950595 8.6 GB
EGAF00005478162 1631676127402 9.7 GB
EGAF00005478163 1631676636277 8.4 GB
EGAF00005478164 1631643412661 9.7 GB
EGAF00005478165 1631649336909 9.5 GB
EGAF00005478166 1631646440135 10.4 GB
EGAF00005478167 1631647534909 9.2 GB
EGAF00005478168 1631677052940 10.8 GB
EGAF00005478169 1631651818853 8.8 GB
EGAF00005478170 1631676506589 9.2 GB
EGAF00005478171 1631664472759 5.8 GB
EGAF00005478172 1631648366104 6.3 GB
EGAF00005478173 1631657973978 7.3 GB
EGAF00005478174 1631677325079 7.2 GB
EGAF00005478175 1631677418888 9.0 GB
EGAF00005478176 1631664271259 10.3 GB
EGAF00005478177 1631665544191 8.0 GB
EGAF00005478178 1631637904701 8.4 GB
EGAF00005478179 1631636592803 7.8 GB
EGAF00005478180 1631654314527 8.7 GB
EGAF00005478181 1631651818853 5.6 GB
EGAF00005478182 1631663026959 6.1 GB
EGAF00005478183 1631651818853 9.7 GB
EGAF00005478184 1631647053401 10.3 GB
EGAF00005478185 1631652757460 9.6 GB
EGAF00005478186 1631644221414 10.1 GB
EGAF00005478187 1631636702254 10.2 GB
EGAF00005478188 1631664271259 11.3 GB
EGAF00005478189 1631637904701 8.0 GB
EGAF00005478190 1631663611900 8.6 GB
EGAF00005478191 1631649336909 11.1 GB
EGAF00005478192 1631651818853 11.0 GB
EGAF00005478193 1631677292457 15.9 GB
EGAF00005478194 1631664815700 16.8 GB
EGAF00005478195 1631649224784 8.9 GB
EGAF00005478196 1631637979330 9.6 GB
EGAF00005478197 1631651818853 7.3 GB
EGAF00005478198 1631665806780 8.5 GB
EGAF00005478199 1631679510799 8.6 GB
EGAF00005478200 1631648975132 9.4 GB
EGAF00005478201 1631651818853 7.2 GB
EGAF00005478202 1631655628127 7.9 GB
EGAF00005478203 1631636702254 7.4 GB
EGAF00005478204 1631645793126 7.8 GB
EGAF00005478205 1631639525003 8.3 GB
EGAF00005478206 1631644344879 9.1 GB
EGAF00005478207 1631636165633 8.8 GB
EGAF00005478208 1631637663468 9.3 GB
EGAF00005478209 1631651818853 8.9 GB
EGAF00005478210 1631655390724 9.3 GB
EGAF00005478211 1631649455061 9.9 GB
EGAF00005478212 1631663263130 11.0 GB
EGAF00005478213 1631655869783 8.3 GB
EGAF00005478214 1631647902802 9.9 GB
EGAF00005478215 1631652629399 7.9 GB
EGAF00005478216 1631649336909 8.3 GB
EGAF00005478217 1631649455061 8.5 GB
EGAF00005478218 1631639594072 9.1 GB
EGAF00005478219 1631637486338 8.2 GB
EGAF00005478220 1631646688891 8.6 GB
EGAF00005478221 1631664989504 7.4 GB
EGAF00005478222 1631649224784 8.5 GB
EGAF00005478223 1631651818853 16.9 GB
EGAF00005478224 1631653106543 17.8 GB
EGAF00005478225 1631652869350 14.5 GB
EGAF00005478226 1631661093896 16.3 GB
EGAF00005478227 1631677292457 6.3 GB
EGAF00005478228 1631648024682 6.8 GB
EGAF00005478229 1631636417092 7.9 GB
EGAF00005478230 1631670210165 9.3 GB
EGAF00005478231 1631640846375 7.0 GB
EGAF00005478232 1631647648919 7.7 GB
EGAF00005478233 1631647403928 6.0 GB
EGAF00005478234 1631639028865 6.4 GB
EGAF00005478235 1631665544191 7.7 GB
EGAF00005478236 1631690609075 7.8 GB
EGAF00005478237 1631641154761 8.2 GB
EGAF00005478238 1631641389293 9.6 GB
EGAF00005478239 1631635756004 7.2 GB
EGAF00005478240 1631649224784 7.5 GB
EGAF00005478241 1631645793126 7.5 GB
EGAF00005478242 1631651818853 7.7 GB
EGAF00005478243 1631652388613 21.4 GB
EGAF00005478244 1631654915375 21.6 GB
EGAF00005478245 1631649099129 14.1 GB
EGAF00005478246 1631651818853 15.7 GB
EGAF00005478247 1631642788848 13.4 GB
EGAF00005478248 1631663645203 13.6 GB
EGAF00005478249 1631691980945 11.7 GB
EGAF00005478250 1631655150463 12.4 GB
EGAF00005478251 1631664815700 24.8 GB
EGAF00005478252 1631638387483 25.8 GB
EGAF00005478253 1631654191930 6.9 GB
EGAF00005478254 1631662065595 8.0 GB
EGAF00005478255 1631664989504 7.6 GB
EGAF00005478256 1631642228547 8.2 GB
EGAF00005478257 1631649336909 16.5 GB
EGAF00005478258 1631654432933 17.2 GB
EGAF00005478259 1631679871117 14.8 GB
EGAF00005478260 1631656235190 16.6 GB
EGAF00005478261 1631649455060 9.7 GB
EGAF00005478262 1631637303481 11.2 GB
EGAF00005478263 1631648024681 8.2 GB
EGAF00005478264 1631648244651 8.6 GB
EGAF00005478265 1631676682491 7.6 GB
EGAF00005478266 1631646154042 8.3 GB
EGAF00005478267 1631635861341 7.6 GB
EGAF00005478268 1631634565478 8.1 GB
EGAF00005478269 1631677903727 9.9 GB
EGAF00005478270 1631640498597 10.2 GB
EGAF00005478271 1631678585238 17.5 GB
EGAF00005478272 1631664271259 18.3 GB
EGAF00005478273 1631653740098 12.5 GB
EGAF00005478274 1631658087259 12.1 GB
EGAF00005478275 1631638084422 9.4 GB
EGAF00005478276 1631653636452 10.8 GB
EGAF00005478277 1631648481881 6.3 GB
EGAF00005478278 1631648024681 7.0 GB
EGAF00005478279 1631670330175 9.8 GB
EGAF00005478280 1631637728983 11.0 GB
EGAF00005478281 1631646440135 10.4 GB
EGAF00005478282 1631653636452 12.5 GB
EGAF00005478283 1631635017225 7.8 GB
EGAF00005478284 1631653636452 9.1 GB
EGAF00005478285 1631675972871 7.6 GB
EGAF00005478286 1631651818853 8.7 GB
EGAF00005478287 1631635146621 7.2 GB
EGAF00005478288 1631652522575 8.0 GB
EGAF00005478289 1631652664353 11.5 GB
EGAF00005478290 1631637486338 12.8 GB
EGAF00005478291 1631648024681 8.3 GB
EGAF00005478292 1631637303481 8.6 GB
EGAF00005478293 1631647902802 6.5 GB
EGAF00005478294 1631663133654 7.0 GB
EGAF00005478295 1631653636452 10.0 GB
EGAF00005478296 1631639774049 10.3 GB
EGAF00005478297 1631652987221 15.1 GB
EGAF00005478298 1631649336909 17.2 GB
EGAF00005478299 1631647053401 17.3 GB
EGAF00005478300 1631652148854 18.7 GB
EGAF00005478301 1631669734112 8.9 GB
EGAF00005478302 1631651818853 10.0 GB
EGAF00005478303 1631635926539 13.1 GB
EGAF00005478304 1631649099129 14.6 GB
EGAF00005478305 1631676948731 5.6 GB
EGAF00005478306 1631662171276 6.1 GB
EGAF00005478307 1631681344384 8.9 GB
EGAF00005478308 1631662416903 9.6 GB
EGAF00005478309 1631648126569 9.5 GB
EGAF00005478310 1631648024681 10.3 GB
EGAF00005478311 1631643664935 7.6 GB
EGAF00005478312 1631652522575 8.1 GB
EGAF00005478313 1631647403928 6.0 GB
EGAF00005478314 1631645663599 6.5 GB
EGAF00005478315 1631652148854 11.2 GB
EGAF00005478316 1631663743858 12.8 GB
EGAF00005478317 1631648244649 9.9 GB
EGAF00005478318 1631647403928 11.4 GB
EGAF00005478319 1631637559406 7.1 GB
EGAF00005478320 1631652869350 8.1 GB
EGAF00005478321 1631636045791 6.4 GB
EGAF00005478322 1631634482741 6.6 GB
EGAF00005478323 1631638746578 7.2 GB
EGAF00005478324 1631642046345 7.9 GB
EGAF00005478325 1631664271259 19.0 GB
EGAF00005478326 1631653636452 19.0 GB
EGAF00005478327 1631641389293 8.0 GB
EGAF00005478328 1631663611900 8.5 GB
EGAF00005478329 1631637904701 11.3 GB
EGAF00005478330 1631651818853 11.9 GB
EGAF00005478331 1631661967358 9.1 GB
EGAF00005478332 1631653636452 10.6 GB
EGAF00005478333 1631638746577 5.1 GB
EGAF00005478334 1631637187928 5.6 GB
EGAF00005478335 1631665685606 8.2 GB
EGAF00005478336 1631640498596 9.2 GB
EGAF00005478337 1631677536732 8.6 GB
EGAF00005478338 1631649224784 9.8 GB
EGAF00005478339 1631647403928 5.5 GB
EGAF00005478340 1631656107235 6.1 GB
EGAF00005478341 1631648645397 10.8 GB
EGAF00005478342 1631638565737 12.1 GB
EGAF00005478343 1631637663468 8.9 GB
EGAF00005478344 1631639825059 10.2 GB
EGAF00005478345 1631639347289 7.1 GB
EGAF00005478346 1631637728983 7.6 GB
EGAF00005478347 1631636592803 7.9 GB
EGAF00005478348 1631651818853 9.0 GB
EGAF00005478349 1631653636452 9.0 GB
EGAF00005478350 1631647403928 10.3 GB
EGAF00005478351 1631638501526 7.6 GB
EGAF00005478352 1631653636452 8.3 GB
EGAF00005478353 1631684131397 18.9 GB
EGAF00005478354 1631645417688 20.7 GB
EGAF00005478355 1631647902802 13.6 GB
EGAF00005478356 1631653237473 14.7 GB
EGAF00005478357 1631639028865 5.7 GB
EGAF00005478358 1631664637706 6.3 GB
EGAF00005478359 1631659047201 7.7 GB
EGAF00005478360 1631635500134 8.6 GB
EGAF00005478361 1631653636452 9.3 GB
EGAF00005478362 1631651818853 10.2 GB
210 Files (2.1 TB)