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Neuroblastoma patient Total RNA Seq data

Tumor Total RNA Seq data of primary neuroblastomas. This is an update of the „Berlin Neuroblastoma Dataset” (EGAS00001004022). This data was used for the analysis of circular RNA expression and regulation in neuroblastoma.

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Data access policy to access neuroblastoma dataset

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Berlin Neuroblastoma Cohort DAC (Prof. Dr. Schulte) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Prof. Dr. Schulte and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. DAC: The Berlin Neuroblastoma Cohort DAC Prof. Dr. Schulte: Department of Pediatric Oncology, Charite Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the following Publication Policy: In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with the Berlin Neuroblastoma Cohort DAC. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Prof. Dr. Schulte. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the Federal Republic of Germany.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005604 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005478153 fastq.gz 23.9 GB
EGAF00005478154 fastq.gz 25.6 GB
EGAF00005478155 fastq.gz 8.9 GB
EGAF00005478156 fastq.gz 9.2 GB
EGAF00005478157 fastq.gz 8.4 GB
EGAF00005478158 fastq.gz 8.3 GB
EGAF00005478159 fastq.gz 8.8 GB
EGAF00005478160 fastq.gz 9.4 GB
EGAF00005478161 fastq.gz 8.6 GB
EGAF00005478162 fastq.gz 9.7 GB
EGAF00005478163 fastq.gz 8.4 GB
EGAF00005478164 fastq.gz 9.7 GB
EGAF00005478165 fastq.gz 9.5 GB
EGAF00005478166 fastq.gz 10.4 GB
EGAF00005478167 fastq.gz 9.2 GB
EGAF00005478168 fastq.gz 10.8 GB
EGAF00005478169 fastq.gz 8.8 GB
EGAF00005478170 fastq.gz 9.2 GB
EGAF00005478171 fastq.gz 5.8 GB
EGAF00005478172 fastq.gz 6.3 GB
EGAF00005478173 fastq.gz 7.3 GB
EGAF00005478174 fastq.gz 7.2 GB
EGAF00005478175 fastq.gz 9.0 GB
EGAF00005478176 fastq.gz 10.3 GB
EGAF00005478177 fastq.gz 8.0 GB
EGAF00005478178 fastq.gz 8.4 GB
EGAF00005478179 fastq.gz 7.8 GB
EGAF00005478180 fastq.gz 8.7 GB
EGAF00005478181 fastq.gz 5.6 GB
EGAF00005478182 fastq.gz 6.1 GB
EGAF00005478183 fastq.gz 9.7 GB
EGAF00005478184 fastq.gz 10.3 GB
EGAF00005478185 fastq.gz 9.6 GB
EGAF00005478186 fastq.gz 10.1 GB
EGAF00005478187 fastq.gz 10.2 GB
EGAF00005478188 fastq.gz 11.3 GB
EGAF00005478189 fastq.gz 8.0 GB
EGAF00005478190 fastq.gz 8.6 GB
EGAF00005478191 fastq.gz 11.1 GB
EGAF00005478192 fastq.gz 11.0 GB
EGAF00005478193 fastq.gz 15.9 GB
EGAF00005478194 fastq.gz 16.8 GB
EGAF00005478195 fastq.gz 8.9 GB
EGAF00005478196 fastq.gz 9.6 GB
EGAF00005478197 fastq.gz 7.3 GB
EGAF00005478198 fastq.gz 8.5 GB
EGAF00005478199 fastq.gz 8.6 GB
EGAF00005478200 fastq.gz 9.4 GB
EGAF00005478201 fastq.gz 7.2 GB
EGAF00005478202 fastq.gz 7.9 GB
EGAF00005478203 fastq.gz 7.4 GB
EGAF00005478204 fastq.gz 7.8 GB
EGAF00005478205 fastq.gz 8.3 GB
EGAF00005478206 fastq.gz 9.1 GB
EGAF00005478207 fastq.gz 8.8 GB
EGAF00005478208 fastq.gz 9.3 GB
EGAF00005478209 fastq.gz 8.9 GB
EGAF00005478210 fastq.gz 9.3 GB
EGAF00005478211 fastq.gz 9.9 GB
EGAF00005478212 fastq.gz 11.0 GB
EGAF00005478213 fastq.gz 8.3 GB
EGAF00005478214 fastq.gz 9.9 GB
EGAF00005478215 fastq.gz 7.9 GB
EGAF00005478216 fastq.gz 8.3 GB
EGAF00005478217 fastq.gz 8.5 GB
EGAF00005478218 fastq.gz 9.1 GB
EGAF00005478219 fastq.gz 8.2 GB
EGAF00005478220 fastq.gz 8.6 GB
EGAF00005478221 fastq.gz 7.4 GB
EGAF00005478222 fastq.gz 8.5 GB
EGAF00005478223 fastq.gz 16.9 GB
EGAF00005478224 fastq.gz 17.8 GB
EGAF00005478225 fastq.gz 14.5 GB
EGAF00005478226 fastq.gz 16.3 GB
EGAF00005478227 fastq.gz 6.3 GB
EGAF00005478228 fastq.gz 6.8 GB
EGAF00005478229 fastq.gz 7.9 GB
EGAF00005478230 fastq.gz 9.3 GB
EGAF00005478231 fastq.gz 7.0 GB
EGAF00005478232 fastq.gz 7.7 GB
EGAF00005478233 fastq.gz 6.0 GB
EGAF00005478234 fastq.gz 6.4 GB
EGAF00005478235 fastq.gz 7.7 GB
EGAF00005478236 fastq.gz 7.8 GB
EGAF00005478237 fastq.gz 8.2 GB
EGAF00005478238 fastq.gz 9.6 GB
EGAF00005478239 fastq.gz 7.2 GB
EGAF00005478240 fastq.gz 7.5 GB
EGAF00005478241 fastq.gz 7.5 GB
EGAF00005478242 fastq.gz 7.7 GB
EGAF00005478243 fastq.gz 21.4 GB
EGAF00005478244 fastq.gz 21.6 GB
EGAF00005478245 fastq.gz 14.1 GB
EGAF00005478246 fastq.gz 15.7 GB
EGAF00005478247 fastq.gz 13.4 GB
EGAF00005478248 fastq.gz 13.6 GB
EGAF00005478249 fastq.gz 11.7 GB
EGAF00005478250 fastq.gz 12.4 GB
EGAF00005478251 fastq.gz 24.8 GB
EGAF00005478252 fastq.gz 25.8 GB
EGAF00005478253 fastq.gz 6.9 GB
EGAF00005478254 fastq.gz 8.0 GB
EGAF00005478255 fastq.gz 7.6 GB
EGAF00005478256 fastq.gz 8.2 GB
EGAF00005478257 fastq.gz 16.5 GB
EGAF00005478258 fastq.gz 17.2 GB
EGAF00005478259 fastq.gz 14.8 GB
EGAF00005478260 fastq.gz 16.6 GB
EGAF00005478261 fastq.gz 9.7 GB
EGAF00005478262 fastq.gz 11.2 GB
EGAF00005478263 fastq.gz 8.2 GB
EGAF00005478264 fastq.gz 8.6 GB
EGAF00005478265 fastq.gz 7.6 GB
EGAF00005478266 fastq.gz 8.3 GB
EGAF00005478267 fastq.gz 7.6 GB
EGAF00005478268 fastq.gz 8.1 GB
EGAF00005478269 fastq.gz 9.9 GB
EGAF00005478270 fastq.gz 10.2 GB
EGAF00005478271 fastq.gz 17.5 GB
EGAF00005478272 fastq.gz 18.3 GB
EGAF00005478273 fastq.gz 12.5 GB
EGAF00005478274 fastq.gz 12.1 GB
EGAF00005478275 fastq.gz 9.4 GB
EGAF00005478276 fastq.gz 10.8 GB
EGAF00005478277 fastq.gz 6.3 GB
EGAF00005478278 fastq.gz 7.0 GB
EGAF00005478279 fastq.gz 9.8 GB
EGAF00005478280 fastq.gz 11.0 GB
EGAF00005478281 fastq.gz 10.4 GB
EGAF00005478282 fastq.gz 12.5 GB
EGAF00005478283 fastq.gz 7.8 GB
EGAF00005478284 fastq.gz 9.1 GB
EGAF00005478285 fastq.gz 7.6 GB
EGAF00005478286 fastq.gz 8.7 GB
EGAF00005478287 fastq.gz 7.2 GB
EGAF00005478288 fastq.gz 8.0 GB
EGAF00005478289 fastq.gz 11.5 GB
EGAF00005478290 fastq.gz 12.8 GB
EGAF00005478291 fastq.gz 8.3 GB
EGAF00005478292 fastq.gz 8.6 GB
EGAF00005478293 fastq.gz 6.5 GB
EGAF00005478294 fastq.gz 7.0 GB
EGAF00005478295 fastq.gz 10.0 GB
EGAF00005478296 fastq.gz 10.3 GB
EGAF00005478297 fastq.gz 15.1 GB
EGAF00005478298 fastq.gz 17.2 GB
EGAF00005478299 fastq.gz 17.3 GB
EGAF00005478300 fastq.gz 18.7 GB
EGAF00005478301 fastq.gz 8.9 GB
EGAF00005478302 fastq.gz 10.0 GB
EGAF00005478303 fastq.gz 13.1 GB
EGAF00005478304 fastq.gz 14.6 GB
EGAF00005478305 fastq.gz 5.6 GB
EGAF00005478306 fastq.gz 6.1 GB
EGAF00005478307 fastq.gz 8.9 GB
EGAF00005478308 fastq.gz 9.6 GB
EGAF00005478309 fastq.gz 9.5 GB
EGAF00005478310 fastq.gz 10.3 GB
EGAF00005478311 fastq.gz 7.6 GB
EGAF00005478312 fastq.gz 8.1 GB
EGAF00005478313 fastq.gz 6.0 GB
EGAF00005478314 fastq.gz 6.5 GB
EGAF00005478315 fastq.gz 11.2 GB
EGAF00005478316 fastq.gz 12.8 GB
EGAF00005478317 fastq.gz 9.9 GB
EGAF00005478318 fastq.gz 11.4 GB
EGAF00005478319 fastq.gz 7.1 GB
EGAF00005478320 fastq.gz 8.1 GB
EGAF00005478321 fastq.gz 6.4 GB
EGAF00005478322 fastq.gz 6.6 GB
EGAF00005478323 fastq.gz 7.2 GB
EGAF00005478324 fastq.gz 7.9 GB
EGAF00005478325 fastq.gz 19.0 GB
EGAF00005478326 fastq.gz 19.0 GB
EGAF00005478327 fastq.gz 8.0 GB
EGAF00005478328 fastq.gz 8.5 GB
EGAF00005478329 fastq.gz 11.3 GB
EGAF00005478330 fastq.gz 11.9 GB
EGAF00005478331 fastq.gz 9.1 GB
EGAF00005478332 fastq.gz 10.6 GB
EGAF00005478333 fastq.gz 5.1 GB
EGAF00005478334 fastq.gz 5.6 GB
EGAF00005478335 fastq.gz 8.2 GB
EGAF00005478336 fastq.gz 9.2 GB
EGAF00005478337 fastq.gz 8.6 GB
EGAF00005478338 fastq.gz 9.8 GB
EGAF00005478339 fastq.gz 5.5 GB
EGAF00005478340 fastq.gz 6.1 GB
EGAF00005478341 fastq.gz 10.8 GB
EGAF00005478342 fastq.gz 12.1 GB
EGAF00005478343 fastq.gz 8.9 GB
EGAF00005478344 fastq.gz 10.2 GB
EGAF00005478345 fastq.gz 7.1 GB
EGAF00005478346 fastq.gz 7.6 GB
EGAF00005478347 fastq.gz 7.9 GB
EGAF00005478348 fastq.gz 9.0 GB
EGAF00005478349 fastq.gz 9.0 GB
EGAF00005478350 fastq.gz 10.3 GB
EGAF00005478351 fastq.gz 7.6 GB
EGAF00005478352 fastq.gz 8.3 GB
EGAF00005478353 fastq.gz 18.9 GB
EGAF00005478354 fastq.gz 20.7 GB
EGAF00005478355 fastq.gz 13.6 GB
EGAF00005478356 fastq.gz 14.7 GB
EGAF00005478357 fastq.gz 5.7 GB
EGAF00005478358 fastq.gz 6.3 GB
EGAF00005478359 fastq.gz 7.7 GB
EGAF00005478360 fastq.gz 8.6 GB
EGAF00005478361 fastq.gz 9.3 GB
EGAF00005478362 fastq.gz 10.2 GB
210 Files (2.1 TB)