Need Help?

sWGS of OV04 patient samples for ACN rascal study

This dataset contains 142 .bam files of shallow WGS data (~0.1X) from OV04 patient samples. Sequencing reads were aligned to the 1000 Genomes Project GRCh37-derived reference genome using the BWA aligner (v.0.07.17; CRUK-CI alignment pipeline).

Request Access

Data Access policy - Brenton Lab (OV04 study)

Data Access Request Form – Brenton Lab, CRUK-CI, University of Cambridge, UK These terms and conditions govern access to and use of the managed access datasets to which the User Institution has requested access. The User Institution and User agree to be bound by these terms and conditions. Definitions: Confidential Information: means any information provided by the Data Provider relating to the Data Data: The managed access dataset(s) to which the User Institution has requested access, as detailed in Schedule B. Data Provider: THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE of The Old Schools, Trinity Lane, Cambridge CB2 1TN, United Kingdom and the Cambridge University Hospitals NHS Foundation Trust of Addenbrooke’s Hospital, Cambridge, CB2 0QQ; represented by staff of the Brenton Group at the Cancer Research UK Cambridge Institute, and contactable by email at james.brenton@cruk.cam.ac.uk or future email as updated; or future representatives as indicated in Data Access Committee(s) for the dataset(s) defined in Schedule B. Data Subject: means an individual who participated in research studies from whom the Data was derived. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Personal Data: means information and/or data about one or more living person who is the subject of personal data and who can be identified from that information, as provided under the General Data Protection Regulation (EU) 2016/679 (as amended from time to time), including but not limited to surname, initials, date of birth, address and postcodes, national insurance number, hospital number or NHS number. Project: The research project for which the User Institution has requested access to these Data, as defined in Schedule B. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Data Provider will provide access to Data to the User Institution under the following Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. You agree to protect the confidentiality of Data Subjects in any Publications that you prepare by taking all reasonable care to limit the possibility of identification. You agree not to attempt to link Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. 2. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for carrying out the Project or as reasonably necessary for Data/safety monitoring or programme management. If You wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate application for access to the Data. 3. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and Project described in Schedule B and for no other purpose. 4. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of Data Subjects and/or other ethical scrutiny or concerns, you will destroy earlier versions of the Data, and upon request of Data Provider, provide written certification of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 5. You agree to acknowledge in any Publication based in whole or part on the Data, the published paper(s) from which the Data derives, and the version of the Data. 6. You agree and acknowledge that the researchers of this study, the original Data creators, depositors, or copyright holders, and the Data Provider: a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 7. You understand and acknowledge that the Data is owned by Data Provider and its collaborators and is protected by copyright, database rights and other intellectual property rights. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Project and for no other purpose, or sell all or any part of the Data in any circumstances. 8. You recognise that by granting You access to Data, no rights or ownership or intellectual property rights in or relating to the Data are transferred to You. 9. Upon any breach by You of the terms set out in this form, You will be required to destroy the Data in Your possession, and upon request, provide written certification to the Data Provider of such destruction. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 10. You accept that it may be necessary for the Data Provider to alter the terms of use of the Data from time to time. As an example, this may include specific provisions relating to the Data required by Data Provider or collaborator parties. In the event that changes are required, the Data Provider or their appointed agent will contact You to inform You of the changes and You may elect either to accept the changes or to destroy the Data in Your possession and cease its use. Your obligations as set out in this form pertaining to the Data and its use will continue to operate in full force and effect after Data is destroyed. 11. You agree that the Data is protected by and subject to applicable international laws. You are responsible for ensuring compliance with any such laws. The Data Provider reserves the right to request and inspect Your data security and management documentation to ensure the adequacy and compliance of data protection measures pertaining to storage and use of Data. 12. If the Data includes any identifiable Personal Data, You agree to: (a) take appropriate technical and organisational measures against the unauthorised or unlawful processing and/or use of the Data, any data derived from the Data and/or and all Confidential Information, against the accidental loss or destruction of, or damage to, such data and information. (b) ensure that the measures referred to in (a) shall include the measures set out in Schedule A. (c) restrict access to the Data, any data derived from the Data and all other Confidential Information to employees who strictly need access to such data and/or information to undertake the Project, and shall ensure that all such employees are reliable, and informed of the confidential nature of such data and/or information and the importance of processing it securely. (d) For the avoidance of doubt, You undertake not to disclose to a third party, whether in connection with the Project or otherwise, any data and/or information contained in or derived from the Data which constitutes Personal Data. Schedule A 1.1 You acknowledge and agree that the Data is pseudonymised Data and that You will become the Data Controller on receipt of such Data. 1.2 You will only process the Data for the purpose of carrying out the Project. 1.3 You agree that safeguards required under Article 89(1) of GDPR, and relevant conditions under the Data Protection Act 2018, are satisfied, and in particular that: (i) the processing of Data under or in connection with this Agreement is in the public interest; and (ii) if applicable, the Project has been subject to ethical review by an appropriate institutional review board or independent ethics committee. 1.4 The Data Provider does not intend to provide any information that may lead to You being able to identify any individual from whom any Data has been obtained. 1.5 You agree that You shall not analyse or make any use of any Data where it is reasonably foreseeable that such analysis or use may lead to the identification of any Data Subject or compromise the anonymity of any Data Subject in any way. 1.6 You shall notify the Data Provider immediately of any actual or suspected breach of security which involves the Data.   Schedule B Name of the applicant and co-applicant(s), including affiliations, titles and contact details. For dataset deposited at EGA, applicants must have registered accounts at EGA. Student applicants must include their supervisors as a co-applicant. Name of Registered User Email Job Title Supervisor* Title of Project (in less than 30 words) Data Requested (please indicate relevant publication(s) describing the data, accession number(s) and/or relevant links to data, and [where relevant] details of and links to the respective Data Access Committee(s) (DAC)) Research Project: Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data and include key references. Brief description of the infrastructure and experience for handling the requested data securely Signature of authorized signatory of User Institution Signature: Name: Title: Date: Signature of Principal Investigator I confirm that I have read and understood the TERMS AND CONDITIONS as set forth in this DATA ACCESS REQUEST FORM. Signature: Name: Title: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005477243 1631563033955 812.0 MB
EGAF00005477244 1631562861729 857.1 MB
EGAF00005477245 1631562798793 784.8 MB
EGAF00005477246 1631569267331 3.8 GB
EGAF00005477247 1631564300704 1.2 GB
EGAF00005477248 1631568177843 1.2 GB
EGAF00005477249 1631580937417 1.7 GB
EGAF00005477250 1631568071999 2.7 GB
EGAF00005477251 1631564300704 1.2 GB
EGAF00005477252 1631610584684 1.5 GB
EGAF00005477253 1631580548600 1.6 GB
EGAF00005477254 1631593650556 1.5 GB
EGAF00005477255 1631581898268 1.1 GB
EGAF00005477256 1631588772553 6.0 GB
EGAF00005477257 1631586645534 4.4 GB
EGAF00005477258 1631586072478 5.1 GB
EGAF00005477259 1631572645633 2.9 GB
EGAF00005477260 1631580011683 2.0 GB
EGAF00005477261 1631578461288 917.6 MB
EGAF00005477262 1631624785092 8.7 GB
EGAF00005477263 1631607468593 6.3 GB
EGAF00005477264 1631579739363 2.5 GB
EGAF00005477265 1631564300704 1.3 GB
EGAF00005477266 bam 13.8 GB
EGAF00005477267 1631579985469 2.0 GB
EGAF00005477268 1631579135089 1.5 GB
EGAF00005477269 1631564300704 1.2 GB
EGAF00005477270 1631583790987 4.6 GB
EGAF00005477271 1631570120159 2.5 GB
EGAF00005477272 1631564300704 950.6 MB
EGAF00005477273 1631619773704 1.7 GB
EGAF00005477274 1631618695704 1.2 GB
EGAF00005477275 1631572696574 5.2 GB
EGAF00005477276 1631564300704 1.2 GB
EGAF00005477277 1631611667000 2.5 GB
EGAF00005477278 1631595001629 2.8 GB
EGAF00005477279 1631606392250 12.9 GB
EGAF00005477280 1631578535160 1.1 GB
EGAF00005477281 1631594926777 2.6 GB
EGAF00005477282 1631582441733 3.3 GB
EGAF00005477283 1631636165633 3.3 GB
EGAF00005477284 1631564300704 1.3 GB
EGAF00005477285 1631593010714 713.6 MB
EGAF00005477286 1631626422519 7.6 GB
EGAF00005477287 1631595828126 2.8 GB
EGAF00005477288 1631562717697 761.1 MB
EGAF00005477289 1631562985749 1.0 GB
EGAF00005477290 1631564300704 998.1 MB
EGAF00005477291 1631564300704 1.1 GB
EGAF00005477292 1631622475410 6.9 GB
EGAF00005477293 1631593010714 530.4 MB
EGAF00005477294 1631578643966 3.0 GB
EGAF00005477295 1631562440501 618.2 MB
EGAF00005477296 1631618876027 1.3 GB
EGAF00005477297 1631565164521 1.6 GB
EGAF00005477298 1631562985749 1.1 GB
EGAF00005477299 1631567184909 1.4 GB
EGAF00005477300 1631564300704 1.3 GB
EGAF00005477301 1631579690301 2.6 GB
EGAF00005477302 1631564300704 1.4 GB
EGAF00005477303 1631578461288 877.5 MB
EGAF00005477304 1631566485746 2.4 GB
EGAF00005477305 1631578984948 844.4 MB
EGAF00005477306 1631579224286 1.2 GB
EGAF00005477307 1631578643966 1.1 GB
EGAF00005477308 1631614369712 7.8 GB
EGAF00005477309 1631579690301 2.3 GB
EGAF00005477310 1631564300704 1.3 GB
EGAF00005477311 1631593851379 1.1 GB
EGAF00005477312 1631578984948 1.0 GB
EGAF00005477313 1631607707442 14.6 GB
EGAF00005477314 1631586008770 6.1 GB
EGAF00005477315 1631564300704 1.6 GB
EGAF00005477316 1631564300704 1.1 GB
EGAF00005477317 1631594274941 3.0 GB
EGAF00005477318 1631611967325 3.0 GB
EGAF00005477319 1631567184909 2.5 GB
EGAF00005477320 1631579443117 1.3 GB
EGAF00005477321 1631562985749 701.3 MB
EGAF00005477322 1631581898268 2.8 GB
EGAF00005477323 1631579587652 689.1 MB
EGAF00005477324 1631564300704 1.1 GB
EGAF00005477325 1631562717697 846.2 MB
EGAF00005477326 1631564300704 1.3 GB
EGAF00005477327 1631567289115 1.3 GB
EGAF00005477328 1631615570532 14.8 GB
EGAF00005477329 1631564300704 1.2 GB
EGAF00005477330 1631564300704 1.6 GB
EGAF00005477331 1631566271375 2.3 GB
EGAF00005477332 1631564300704 1.2 GB
EGAF00005477333 1631563161020 1.2 GB
EGAF00005477334 1631610584684 1.4 GB
EGAF00005477335 1631565059227 1.8 GB
EGAF00005477336 1631564300704 1.2 GB
EGAF00005477337 1631575175389 4.1 GB
EGAF00005477338 1631593752143 886.8 MB
EGAF00005477339 1631579587652 2.1 GB
EGAF00005477340 bam 452.3 MB
EGAF00005477341 1631564300704 1.4 GB
EGAF00005477342 1631578461288 829.0 MB
EGAF00005477343 1631564300704 746.0 MB
EGAF00005477344 1631564300704 1.6 GB
EGAF00005477345 1631596068157 2.3 GB
EGAF00005477346 1631591292607 7.1 GB
EGAF00005477347 1631565655955 2.9 GB
EGAF00005477348 1631583314787 4.1 GB
EGAF00005477349 1631582182434 4.3 GB
EGAF00005477350 1631564639384 1.0 GB
EGAF00005477351 1631564300704 1.2 GB
EGAF00005477352 1631564639384 1.1 GB
EGAF00005477353 1631578984948 1.6 GB
EGAF00005477354 1631566485745 1.8 GB
EGAF00005477355 1631564639384 1.0 GB
EGAF00005477356 1631564639384 1.8 GB
EGAF00005477357 1631564770560 1.2 GB
EGAF00005477358 1631572645633 4.6 GB
EGAF00005477359 1631609870565 3.2 GB
EGAF00005477360 1631588410137 5.5 GB
EGAF00005477361 1631597585752 3.6 GB
EGAF00005477362 1631580103065 2.1 GB
EGAF00005477363 1631566088890 743.4 MB
EGAF00005477364 1631664637706 15.1 GB
EGAF00005477365 1631562861729 643.3 MB
EGAF00005477366 bam 371.2 MB
EGAF00005477367 1631618284230 1.9 GB
EGAF00005477368 1631580937417 3.0 GB
EGAF00005477369 1631579224286 2.2 GB
EGAF00005477370 1631608550258 1.9 GB
EGAF00005477371 1631565308893 1.3 GB
EGAF00005477372 1631636344908 11.7 GB
EGAF00005477373 1631568071999 1.3 GB
EGAF00005477374 1631616589937 8.3 GB
EGAF00005477375 1631594416865 1.8 GB
EGAF00005477376 1631567843614 1.1 GB
EGAF00005477377 1631578461288 935.0 MB
EGAF00005477378 1631613349623 8.0 GB
EGAF00005477379 1631565731717 1.0 GB
EGAF00005477380 1631564891784 1.6 GB
EGAF00005477381 1631651818853 11.5 GB
EGAF00005477382 1631565308893 727.0 MB
EGAF00005477383 1631579224286 2.3 GB
EGAF00005477384 1631565445674 2.7 GB
142 Files (393.8 GB)