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Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8, with 3 or 6 sections from each)

Spatial transcriptome sequence data from HER2-positive human breast tumors obtained from the first generation of Spatial Transcriptomics arrays. The dataset contains 8 different tumors with 3 or 6 sections taken from each with paired-end sequencing.

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Policy for data accessibility of the raw data in the study

Data Use Limitations: (including applicable Data Use Ontology terms) • Use of the Data is limited to research on breast cancer (Mondo Disease Ontology: MONDO:0007254) for health/medical/biomedical purposes (DS, DUO:0000007). • Data Recipient must provide documentation of approval by a local Ethical Review Board or equivalent (IRB, DUO:0000021). • Use of the Data is limited to not-for-profit organizations and not-for-profit use, non-commercial use (NPUNCU, DUO:0000018). • The Data must only be used for purposes within the limits dictated by the informed consent of the Data Subjects. • The Data must not be used to identify germline variants associated with a high risk of developing cancer (e.g. variants in BRCA1, BRCA2, TP53 and similar). • Data Recipient is expected to report to Provider any Incidental Findings that could potentially affect the health of a Data Subject, living relatives of the Data Subject, or their offspring. This includes information that reveal likely life-threatening conditions, a significant risk of likely life-threatening conditions, grave conditions that can be avoided or ameliorated, a significant risk of grave conditions that can be avoided or ameliorated and genetic information that can be used in reproductive decision-making to avoid significant risk for offspring of a condition likely to be life-threatening or grave or to ameliorate a condition likely to be life-threatening or grave. Spatial transcriptome sequence data from HER2-positive human breast tumors (n=8)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005446978 1630585153796 2.9 GB
EGAF00005446979 1630584826823 4.0 GB
EGAF00005446980 1630585329457 4.3 GB
EGAF00005446981 1630587424732 5.8 GB
EGAF00005446982 1630588055031 3.4 GB
EGAF00005446983 1630585747048 4.7 GB
EGAF00005446984 1630585153796 1.6 GB
EGAF00005446985 1630585329456 2.2 GB
EGAF00005446986 1630585621222 2.6 GB
EGAF00005446987 1630586267726 3.9 GB
EGAF00005446988 1630587965080 2.4 GB
EGAF00005446989 1630588444394 3.5 GB
EGAF00005446990 1630586968200 3.4 GB
EGAF00005446991 1630586267726 5.3 GB
EGAF00005446992 1630586968200 1.7 GB
EGAF00005446993 1630585153796 2.5 GB
EGAF00005446994 1630585621222 2.7 GB
EGAF00005446995 1630586143367 3.9 GB
EGAF00005446996 1630585747048 2.2 GB
EGAF00005446997 1630587105074 3.3 GB
EGAF00005446998 1630585153796 2.1 GB
EGAF00005446999 1630586143367 3.3 GB
EGAF00005447000 1630588775183 3.1 GB
EGAF00005447001 1630585491712 4.1 GB
EGAF00005447002 1630587910930 2.3 GB
EGAF00005447003 1630588174463 3.4 GB
EGAF00005447004 1630586143367 2.6 GB
EGAF00005447005 1630585858716 3.7 GB
EGAF00005447006 1630585329456 2.5 GB
EGAF00005447007 1630585621222 3.7 GB
EGAF00005447008 1630585329456 1.8 GB
EGAF00005447009 1630585994694 2.7 GB
EGAF00005447010 1630585994694 2.9 GB
EGAF00005447011 1630585491712 3.8 GB
EGAF00005447012 1630587910931 2.6 GB
EGAF00005447013 1630588595377 3.6 GB
EGAF00005447014 1630585747048 2.1 GB
EGAF00005447015 1630586267726 3.1 GB
EGAF00005447016 1630586608705 2.9 GB
EGAF00005447017 1630587105074 3.9 GB
EGAF00005447018 1630586267726 3.4 GB
EGAF00005447019 1630586424614 4.8 GB
EGAF00005447020 1630595794704 2.9 GB
EGAF00005447021 1630595825228 4.4 GB
EGAF00005447022 1630586143367 2.3 GB
EGAF00005447023 1630585491712 3.4 GB
EGAF00005447024 1630584971643 3.2 GB
EGAF00005447025 1630585491712 4.8 GB
EGAF00005447026 1630595704019 2.0 GB
EGAF00005447027 1630585621222 3.0 GB
EGAF00005447028 1630586143367 2.4 GB
EGAF00005447029 1630585491712 3.3 GB
EGAF00005447030 1630585329456 2.6 GB
EGAF00005447031 1630585747048 3.7 GB
EGAF00005447032 1630585621222 2.4 GB
EGAF00005447033 1630595675598 3.5 GB
EGAF00005447034 1630585747048 2.0 GB
EGAF00005447035 1630588114406 3.0 GB
EGAF00005447036 1630595794704 2.7 GB
EGAF00005447037 1630585491712 3.8 GB
EGAF00005447038 1630585329456 2.9 GB
EGAF00005447039 1630586746851 4.0 GB
EGAF00005447040 1630586424614 2.5 GB
EGAF00005447041 1630585153796 3.9 GB
EGAF00005447042 1630588534151 2.5 GB
EGAF00005447043 1630587105074 3.7 GB
EGAF00005447044 1630585858716 3.2 GB
EGAF00005447045 1630586746851 4.5 GB
EGAF00005447046 1630588685000 2.8 GB
EGAF00005447047 1630586608705 4.4 GB
EGAF00005447048 1630585621222 3.3 GB
EGAF00005447049 1630595945283 4.3 GB
72 Files (232.6 GB)