Sequencing data associated with Smith et al, Acta Neuropathologica, 2020 (PMID: 32519082)
The dataset includes 144 BAM files of WGS, WES, and RNA-seq data from primary and PDOX samples analyzed in Smith et al, Acta Neuropathologica, 2020 (PMID: 32519082).
- 09/08/2021
- 144 samples
- DAC: EGAC00001002260
- Technology: unspecified
- Archive: European Genome-phenome Archive (EGA)
Primary patient pediatric brain tumors from patients treated at SJCRH were implanted and amplified only in the brain of immunocompromised mice without tissue culture steps and referred as patient-derived orthotopic xenografts (Smith et al, Acta Neuropathologica, 2020). Associated sequencing data including WGS, WES, and RNA-seq are deposited here. Policy is required for access, research use and citations of the dataset.
Policy URL: https://drive.google.com/file/d/1gbh4YIEad9GkXz5F3wNY_As9SWxv03Ny/view
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005533 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF00005422794 | 1628566621403 | 7.8 GB |
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| EGAF00005422795 | 1628562715640 | 5.9 GB |
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| EGAF00005422796 | 1628563828968 | 6.9 GB |
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| EGAF00005422797 | 1628564390873 | 7.7 GB |
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| EGAF00005422798 | 1628567369472 | 7.9 GB |
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| EGAF00005422799 | 1628557451602 | 4.7 GB |
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| EGAF00005422800 | 1628565019433 | 8.0 GB |
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| EGAF00005422801 | 1628553504318 | 2.6 GB |
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| EGAF00005422802 | 1628554575046 | 3.3 GB |
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| EGAF00005422803 | 1628564390873 | 6.7 GB |
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| EGAF00005422804 | 1628567799775 | 7.0 GB |
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| EGAF00005422805 | 1628568130697 | 10.9 GB |
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| EGAF00005422806 | bam | 97.5 GB |
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| EGAF00005422807 | bam | 88.9 GB |
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| EGAF00005422808 | 1628559934913 | 5.2 GB |
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| EGAF00005422809 | bam | 97.3 GB |
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| EGAF00005422810 | 1628565231361 | 5.8 GB |
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| EGAF00005422811 | 1628566621403 | 7.6 GB |
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| EGAF00005422812 | 1628573157621 | 14.1 GB |
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| EGAF00005422813 | 1628567666415 | 9.1 GB |
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| EGAF00005422814 | 1628565964100 | 11.7 GB |
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| EGAF00005422815 | bam | 6.6 GB |
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| EGAF00005422816 | 1628566621403 | 7.0 GB |
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| EGAF00005422817 | bam | 64.8 GB |
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| EGAF00005422818 | 1628554362554 | 3.5 GB |
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| EGAF00005422819 | 1628573036096 | 10.6 GB |
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| EGAF00005422820 | 1628565019433 | 7.9 GB |
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| EGAF00005422821 | 1628564390873 | 7.0 GB |
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| EGAF00005422822 | 1628565019433 | 6.7 GB |
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| EGAF00005422823 | 1628566768451 | 7.9 GB |
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| EGAF00005422824 | 1628561972276 | 5.5 GB |
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| EGAF00005422825 | 1628555869746 | 3.1 GB |
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| EGAF00005422826 | 1628564390873 | 6.9 GB |
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| EGAF00005422827 | 1628566768451 | 7.0 GB |
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| EGAF00005422828 | 1628567219323 | 7.5 GB |
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| EGAF00005422829 | 1628567369472 | 8.3 GB |
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| EGAF00005422830 | 1628560504747 | 5.3 GB |
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| EGAF00005422831 | 1628572502051 | 9.2 GB |
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| EGAF00005422832 | 1628565019433 | 6.3 GB |
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| EGAF00005422833 | 1628562139988 | 4.8 GB |
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| EGAF00005422834 | 1628557292463 | 4.7 GB |
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| EGAF00005422835 | 1628565019433 | 7.3 GB |
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| EGAF00005422836 | 1628558376351 | 4.3 GB |
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| EGAF00005422837 | 1628563606769 | 6.5 GB |
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| EGAF00005422838 | 1628566768451 | 11.3 GB |
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| EGAF00005422839 | 1628563342019 | 6.3 GB |
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| EGAF00005422840 | 1628568130697 | 11.2 GB |
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| EGAF00005422841 | 1628563342019 | 5.1 GB |
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| EGAF00005422842 | 1628566490115 | 6.2 GB |
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| EGAF00005422843 | 1628554897520 | 4.0 GB |
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| EGAF00005422844 | 1628565593588 | 8.0 GB |
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| EGAF00005422845 | 1628553355812 | 3.4 GB |
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| EGAF00005422846 | 1628558929207 | 5.0 GB |
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| EGAF00005422847 | 1628558177090 | 4.4 GB |
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| EGAF00005422848 | 1628561203426 | 5.1 GB |
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| EGAF00005422849 | 1628572135385 | 6.2 GB |
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| EGAF00005422850 | 1628561203428 | 5.5 GB |
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| EGAF00005422851 | 1628562139988 | 5.7 GB |
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| EGAF00005422852 | 1628565406340 | 6.1 GB |
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| EGAF00005422853 | 1628565019433 | 9.1 GB |
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| EGAF00005422854 | 1628565231361 | 12.1 GB |
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| EGAF00005422855 | 1628567519227 | 9.1 GB |
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| EGAF00005422856 | 1628563134899 | 5.0 GB |
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| EGAF00005422857 | 1628560643905 | 5.4 GB |
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| EGAF00005422858 | 1628563606770 | 6.6 GB |
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| EGAF00005422859 | 1628553108949 | 3.2 GB |
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| EGAF00005422860 | 1628561203428 | 3.7 GB |
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| EGAF00005422861 | bam | 14.6 GB |
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| EGAF00005422862 | 1628558129164 | 4.8 GB |
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| EGAF00005422863 | bam | 13.8 GB |
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| EGAF00005422864 | 1628565019433 | 7.0 GB |
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| EGAF00005422865 | 1628561787540 | 5.1 GB |
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| EGAF00005422866 | 1628572911389 | 10.8 GB |
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| EGAF00005422867 | 1628566621403 | 8.9 GB |
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| EGAF00005422868 | 1628564213280 | 5.8 GB |
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| EGAF00005422869 | 1628557292463 | 4.7 GB |
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| EGAF00005422870 | 1628564213280 | 5.8 GB |
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| EGAF00005422871 | 1628566490115 | 6.2 GB |
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| EGAF00005422872 | 1628565019433 | 6.2 GB |
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| EGAF00005422873 | 1628559075659 | 3.7 GB |
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| EGAF00005422874 | 1628566490115 | 6.5 GB |
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| EGAF00005422875 | 1628564213280 | 7.2 GB |
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| EGAF00005422876 | 1628565750504 | 8.0 GB |
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| EGAF00005422877 | 1628565964100 | 11.7 GB |
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| EGAF00005422878 | 1628567956024 | 10.2 GB |
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| EGAF00005422879 | 1628565964100 | 11.8 GB |
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| EGAF00005422880 | 1628566490115 | 7.6 GB |
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| EGAF00005422881 | 1628566307224 | 7.6 GB |
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| EGAF00005422882 | 1628565750504 | 8.4 GB |
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| EGAF00005422883 | 1628559453550 | 5.1 GB |
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| EGAF00005422884 | bam | 59.1 GB |
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| EGAF00005422885 | 1628560504747 | 5.3 GB |
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| EGAF00005422886 | 1628556713039 | 4.6 GB |
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| EGAF00005422887 | 1628551561941 | 3.0 GB |
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| EGAF00005422888 | 1628563606770 | 5.7 GB |
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| EGAF00005422889 | 1628567219323 | 7.5 GB |
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| EGAF00005422890 | 1628560071484 | 5.2 GB |
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| EGAF00005422891 | bam | 54.6 GB |
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| EGAF00005422892 | 1628561972276 | 5.2 GB |
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| EGAF00005422893 | bam | 88.3 GB |
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| EGAF00005422894 | 1628554774279 | 3.3 GB |
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| EGAF00005422895 | 1628565019433 | 7.7 GB |
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| EGAF00005422896 | 1628572372318 | 6.3 GB |
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| EGAF00005422897 | 1628554774280 | 3.2 GB |
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| EGAF00005422898 | bam | 5.7 GB |
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| EGAF00005422899 | 1628566490115 | 6.6 GB |
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| EGAF00005422900 | 1628558129164 | 3.8 GB |
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| EGAF00005422901 | 1628564213280 | 6.8 GB |
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| EGAF00005422902 | bam | 57.8 GB |
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| EGAF00005422903 | 1628561388838 | 5.5 GB |
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| EGAF00005422904 | 1628565019434 | 6.1 GB |
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| EGAF00005422905 | bam | 51.7 GB |
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| EGAF00005422906 | 1628563134899 | 4.6 GB |
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| EGAF00005422907 | 1628569992222 | 8.1 GB |
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| EGAF00005422908 | bam | 97.4 GB |
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| EGAF00005422909 | bam | 101.8 GB |
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| EGAF00005422910 | bam | 35.9 GB |
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| EGAF00005422911 | bam | 50.9 GB |
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| EGAF00005422912 | 1628557782100 | 4.0 GB |
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| EGAF00005422913 | 1628565406340 | 13.3 GB |
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| EGAF00005422914 | 1628556881195 | 4.0 GB |
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| EGAF00005422915 | 1628557614666 | 4.5 GB |
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| EGAF00005422916 | 1628557451602 | 4.7 GB |
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| EGAF00005422917 | 1628566621403 | 7.8 GB |
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| EGAF00005422918 | 1628565231361 | 6.5 GB |
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| EGAF00005422919 | 1628562529279 | 5.9 GB |
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| EGAF00005422920 | 1628556291693 | 4.0 GB |
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| EGAF00005422921 | 1628567219323 | 7.4 GB |
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| EGAF00005422922 | 1628563342019 | 5.7 GB |
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| EGAF00005422923 | 1628552988857 | 2.7 GB |
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| EGAF00005422924 | 1628565794349 | 7.6 GB |
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| EGAF00005422925 | 1628567369472 | 7.5 GB |
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| EGAF00005422926 | 1628563828968 | 5.6 GB |
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| EGAF00005422927 | 1628565019434 | 8.3 GB |
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| EGAF00005422928 | 1628558376351 | 4.9 GB |
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| EGAF00005422929 | 1628566768451 | 7.1 GB |
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| EGAF00005422930 | 1628565964100 | 13.4 GB |
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| EGAF00005422931 | 1628564390873 | 6.6 GB |
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| EGAF00005422932 | 1628568615713 | 8.6 GB |
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| EGAF00005422933 | bam | 6.3 GB |
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| EGAF00005422934 | 1628561203428 | 5.2 GB |
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| EGAF00005422935 | 1628561203426 | 5.5 GB |
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| EGAF00005422936 | 1628566768451 | 7.2 GB |
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| EGAF00005422937 | 1628568615713 | 8.7 GB |
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| 144 Files (1.8 TB) | ||||