Single-cell RNA-seq of matched primary GBM tumours, patient-derived organoids, and gliomasphere lines
Single-cell RNA-seq of primary GBM tumours and matched patient-derived organoids and gliomasphere lines. Obtained using the 10X Genomics single-cell 3' expression solution (v2 chemistry). Primary samples and PDOs from 12 tumours from 10 patients (10 primary, two recurrent), and gliomasphere lines from a subset of five tumours. Samples were obtained from two spatially distinct regions of each tumour.
- 99 samples
- DAC: EGAC00000000011
- Technology: Illumina HiSeq 2500
- RS DUO:0000012 (version: 2021-02-23)research specific restrictionsThis data use modifier indicates that use is limited to studies of a certain research type.
- RU DUO:0000014 (version: 2019-01-07)research use onlyThis data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
- TS DUO:0000025 (version: 2021-02-23)time limit on useThis data use modifier indicates that use is approved for a specific number of months.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005227 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005403704 | fastq.gz | 2.1 GB | ||
| EGAF00005403705 | fastq.gz | 2.8 GB | ||
| EGAF00005403706 | fastq.gz | 2.4 GB | ||
| EGAF00005403707 | fastq.gz | 3.3 GB | ||
| EGAF00005403708 | fastq.gz | 2.4 GB | ||
| EGAF00005403709 | fastq.gz | 3.3 GB | ||
| EGAF00005403710 | fastq.gz | 2.6 GB | ||
| EGAF00005403711 | fastq.gz | 3.5 GB | ||
| EGAF00005403712 | fastq.gz | 2.2 GB | ||
| EGAF00005403713 | fastq.gz | 2.9 GB | ||
| EGAF00005403714 | fastq.gz | 2.5 GB | ||
| EGAF00005403715 | fastq.gz | 3.4 GB | ||
| EGAF00005403716 | fastq.gz | 3.1 GB | ||
| EGAF00005403717 | fastq.gz | 4.3 GB | ||
| EGAF00005403718 | fastq.gz | 3.0 GB | ||
| EGAF00005403719 | fastq.gz | 4.2 GB | ||
| EGAF00005403720 | fastq.gz | 3.5 GB | ||
| EGAF00005403721 | fastq.gz | 4.9 GB | ||
| EGAF00005403722 | fastq.gz | 3.3 GB | ||
| EGAF00005403723 | fastq.gz | 4.7 GB | ||
| EGAF00005403724 | fastq.gz | 2.9 GB | ||
| EGAF00005403725 | fastq.gz | 4.0 GB | ||
| EGAF00005403726 | fastq.gz | 2.9 GB | ||
| EGAF00005403727 | fastq.gz | 4.0 GB | ||
| EGAF00005403728 | fastq.gz | 2.8 GB | ||
| EGAF00005403729 | fastq.gz | 4.0 GB | ||
| EGAF00005403730 | fastq.gz | 3.1 GB | ||
| EGAF00005403731 | fastq.gz | 4.4 GB | ||
| EGAF00005403732 | fastq.gz | 3.3 GB | ||
| EGAF00005403733 | fastq.gz | 4.6 GB | ||
| EGAF00005403734 | fastq.gz | 3.3 GB | ||
| EGAF00005403735 | fastq.gz | 4.7 GB | ||
| EGAF00005403736 | fastq.gz | 2.7 GB | ||
| EGAF00005403737 | fastq.gz | 3.7 GB | ||
| EGAF00005403738 | fastq.gz | 3.3 GB | ||
| EGAF00005403739 | fastq.gz | 4.6 GB | ||
| EGAF00005403740 | fastq.gz | 3.2 GB | ||
| EGAF00005403741 | fastq.gz | 4.5 GB | ||
| EGAF00005403742 | fastq.gz | 3.1 GB | ||
| EGAF00005403743 | fastq.gz | 4.4 GB | ||
| EGAF00005403744 | fastq.gz | 3.0 GB | ||
| EGAF00005403745 | fastq.gz | 4.1 GB | ||
| EGAF00005403746 | fastq.gz | 3.1 GB | ||
| EGAF00005403747 | fastq.gz | 4.3 GB | ||
| EGAF00005403748 | fastq.gz | 3.1 GB | ||
| EGAF00005403749 | fastq.gz | 4.3 GB | ||
| EGAF00005403750 | fastq.gz | 2.9 GB | ||
| EGAF00005403751 | fastq.gz | 4.1 GB | ||
| EGAF00005403752 | fastq.gz | 2.9 GB | ||
| EGAF00005403753 | fastq.gz | 4.1 GB | ||
| EGAF00005403754 | fastq.gz | 3.0 GB | ||
| EGAF00005403755 | fastq.gz | 4.3 GB | ||
| EGAF00005403756 | fastq.gz | 2.7 GB | ||
| EGAF00005403757 | fastq.gz | 3.7 GB | ||
| EGAF00005403758 | fastq.gz | 3.0 GB | ||
| EGAF00005403759 | fastq.gz | 4.1 GB | ||
| EGAF00005403760 | fastq.gz | 2.9 GB | ||
| EGAF00005403761 | fastq.gz | 4.1 GB | ||
| EGAF00005403762 | fastq.gz | 3.0 GB | ||
| EGAF00005403763 | fastq.gz | 4.2 GB | ||
| EGAF00005403764 | fastq.gz | 2.8 GB | ||
| EGAF00005403765 | fastq.gz | 3.9 GB | ||
| EGAF00005403766 | fastq.gz | 3.1 GB | ||
| EGAF00005403767 | fastq.gz | 4.4 GB | ||
| EGAF00005403768 | fastq.gz | 3.1 GB | ||
| EGAF00005403769 | fastq.gz | 4.4 GB | ||
| EGAF00005403770 | fastq.gz | 2.9 GB | ||
| EGAF00005403771 | fastq.gz | 4.0 GB | ||
| EGAF00005403772 | fastq.gz | 3.3 GB | ||
| EGAF00005403773 | fastq.gz | 4.6 GB | ||
| EGAF00005403774 | fastq.gz | 3.2 GB | ||
| EGAF00005403775 | fastq.gz | 4.5 GB | ||
| EGAF00005403776 | fastq.gz | 3.3 GB | ||
| EGAF00005403777 | fastq.gz | 4.6 GB | ||
| EGAF00005403778 | fastq.gz | 2.2 GB | ||
| EGAF00005403779 | fastq.gz | 3.1 GB | ||
| EGAF00005403780 | fastq.gz | 2.3 GB | ||
| EGAF00005403781 | fastq.gz | 3.3 GB | ||
| EGAF00005403782 | fastq.gz | 2.4 GB | ||
| EGAF00005403783 | fastq.gz | 3.4 GB | ||
| EGAF00005403784 | fastq.gz | 2.4 GB | ||
| EGAF00005403785 | fastq.gz | 3.3 GB | ||
| EGAF00005403786 | fastq.gz | 2.2 GB | ||
| EGAF00005403787 | fastq.gz | 3.1 GB | ||
| EGAF00005403788 | fastq.gz | 2.4 GB | ||
| EGAF00005403789 | fastq.gz | 3.4 GB | ||
| EGAF00005403790 | fastq.gz | 2.5 GB | ||
| EGAF00005403791 | fastq.gz | 3.4 GB | ||
| EGAF00005403792 | fastq.gz | 2.6 GB | ||
| EGAF00005403793 | fastq.gz | 3.7 GB | ||
| EGAF00005403794 | fastq.gz | 2.6 GB | ||
| EGAF00005403795 | fastq.gz | 3.6 GB | ||
| EGAF00005403796 | fastq.gz | 2.6 GB | ||
| EGAF00005403797 | fastq.gz | 3.6 GB | ||
| EGAF00005403798 | fastq.gz | 2.5 GB | ||
| EGAF00005403799 | fastq.gz | 3.5 GB | ||
| EGAF00005403800 | fastq.gz | 2.4 GB | ||
| EGAF00005403801 | fastq.gz | 3.4 GB | ||
| EGAF00005403802 | fastq.gz | 2.7 GB | ||
| EGAF00005403803 | fastq.gz | 3.7 GB | ||
| EGAF00005403804 | fastq.gz | 2.5 GB | ||
| EGAF00005403805 | fastq.gz | 3.4 GB | ||
| EGAF00005403806 | fastq.gz | 2.6 GB | ||
| EGAF00005403807 | fastq.gz | 3.5 GB | ||
| EGAF00005403808 | fastq.gz | 2.6 GB | ||
| EGAF00005403809 | fastq.gz | 3.6 GB | ||
| EGAF00005403810 | fastq.gz | 2.5 GB | ||
| EGAF00005403811 | fastq.gz | 3.6 GB | ||
| EGAF00005403812 | fastq.gz | 2.3 GB | ||
| EGAF00005403813 | fastq.gz | 3.4 GB | ||
| EGAF00005403814 | fastq.gz | 2.6 GB | ||
| EGAF00005403815 | fastq.gz | 3.7 GB | ||
| EGAF00005403816 | fastq.gz | 2.6 GB | ||
| EGAF00005403817 | fastq.gz | 3.8 GB | ||
| EGAF00005403818 | fastq.gz | 2.7 GB | ||
| EGAF00005403819 | fastq.gz | 3.9 GB | ||
| EGAF00005403820 | fastq.gz | 2.3 GB | ||
| EGAF00005403821 | fastq.gz | 3.4 GB | ||
| EGAF00005403822 | fastq.gz | 2.6 GB | ||
| EGAF00005403823 | fastq.gz | 3.8 GB | ||
| EGAF00005403824 | fastq.gz | 2.8 GB | ||
| EGAF00005403825 | fastq.gz | 4.1 GB | ||
| EGAF00005403826 | fastq.gz | 2.6 GB | ||
| EGAF00005403827 | fastq.gz | 3.6 GB | ||
| EGAF00005403828 | fastq.gz | 2.5 GB | ||
| EGAF00005403829 | fastq.gz | 3.5 GB | ||
| EGAF00005403830 | fastq.gz | 2.6 GB | ||
| EGAF00005403831 | fastq.gz | 3.6 GB | ||
| EGAF00005403832 | fastq.gz | 2.8 GB | ||
| EGAF00005403833 | fastq.gz | 3.9 GB | ||
| EGAF00005403834 | fastq.gz | 2.6 GB | ||
| EGAF00005403835 | fastq.gz | 3.7 GB | ||
| EGAF00005403836 | fastq.gz | 2.8 GB | ||
| EGAF00005403837 | fastq.gz | 3.8 GB | ||
| EGAF00005403838 | fastq.gz | 2.8 GB | ||
| EGAF00005403839 | fastq.gz | 3.9 GB | ||
| EGAF00005403840 | fastq.gz | 2.9 GB | ||
| EGAF00005403841 | fastq.gz | 4.0 GB | ||
| EGAF00005403842 | fastq.gz | 2.8 GB | ||
| EGAF00005403843 | fastq.gz | 4.1 GB | ||
| EGAF00005403844 | fastq.gz | 3.1 GB | ||
| EGAF00005403845 | fastq.gz | 4.4 GB | ||
| EGAF00005403846 | fastq.gz | 2.8 GB | ||
| EGAF00005403847 | fastq.gz | 4.0 GB | ||
| EGAF00005403848 | fastq.gz | 2.8 GB | ||
| EGAF00005403849 | fastq.gz | 4.0 GB | ||
| EGAF00005403850 | fastq.gz | 3.0 GB | ||
| EGAF00005403851 | fastq.gz | 4.3 GB | ||
| EGAF00005403852 | fastq.gz | 2.8 GB | ||
| EGAF00005403853 | fastq.gz | 4.0 GB | ||
| EGAF00005403854 | fastq.gz | 3.3 GB | ||
| EGAF00005403855 | fastq.gz | 4.8 GB | ||
| EGAF00005403856 | fastq.gz | 2.9 GB | ||
| EGAF00005403857 | fastq.gz | 3.9 GB | ||
| EGAF00005403858 | fastq.gz | 2.8 GB | ||
| EGAF00005403859 | fastq.gz | 3.7 GB | ||
| EGAF00005403860 | fastq.gz | 2.6 GB | ||
| EGAF00005403861 | fastq.gz | 3.5 GB | ||
| EGAF00005403862 | fastq.gz | 2.9 GB | ||
| EGAF00005403863 | fastq.gz | 3.7 GB | ||
| EGAF00005403864 | fastq.gz | 2.9 GB | ||
| EGAF00005403865 | fastq.gz | 3.9 GB | ||
| EGAF00005403866 | fastq.gz | 2.9 GB | ||
| EGAF00005403867 | fastq.gz | 3.8 GB | ||
| EGAF00005403868 | fastq.gz | 2.9 GB | ||
| EGAF00005403869 | fastq.gz | 3.8 GB | ||
| EGAF00005403870 | fastq.gz | 2.8 GB | ||
| EGAF00005403871 | fastq.gz | 3.7 GB | ||
| EGAF00005403872 | fastq.gz | 2.7 GB | ||
| EGAF00005403873 | fastq.gz | 3.8 GB | ||
| EGAF00005403874 | fastq.gz | 2.8 GB | ||
| EGAF00005403875 | fastq.gz | 3.9 GB | ||
| EGAF00005403876 | fastq.gz | 2.8 GB | ||
| EGAF00005403877 | fastq.gz | 4.0 GB | ||
| EGAF00005403878 | fastq.gz | 2.7 GB | ||
| EGAF00005403879 | fastq.gz | 3.8 GB | ||
| EGAF00005403880 | fastq.gz | 2.7 GB | ||
| EGAF00005403881 | fastq.gz | 3.8 GB | ||
| EGAF00005403882 | fastq.gz | 2.6 GB | ||
| EGAF00005403883 | fastq.gz | 3.7 GB | ||
| EGAF00005403884 | fastq.gz | 2.6 GB | ||
| EGAF00005403885 | fastq.gz | 3.6 GB | ||
| EGAF00005403886 | fastq.gz | 2.6 GB | ||
| EGAF00005403887 | fastq.gz | 3.6 GB | ||
| EGAF00005403888 | fastq.gz | 3.5 GB | ||
| EGAF00005403889 | fastq.gz | 4.9 GB | ||
| EGAF00005403890 | fastq.gz | 2.9 GB | ||
| EGAF00005403891 | fastq.gz | 4.1 GB | ||
| EGAF00005403892 | fastq.gz | 3.3 GB | ||
| EGAF00005403893 | fastq.gz | 4.6 GB | ||
| EGAF00005403894 | fastq.gz | 3.6 GB | ||
| EGAF00005403895 | fastq.gz | 5.0 GB | ||
| EGAF00005403896 | fastq.gz | 3.5 GB | ||
| EGAF00005403897 | fastq.gz | 4.9 GB | ||
| EGAF00005403898 | fastq.gz | 3.6 GB | ||
| EGAF00005403899 | fastq.gz | 4.9 GB | ||
| EGAF00005403900 | fastq.gz | 3.9 GB | ||
| EGAF00005403901 | fastq.gz | 5.5 GB | ||
| 198 Files (669.8 GB) | ||||