UCL COVID-19 Single-cell PBMC
Single-cell multi-omic profiling of COVID19 patients recruited from University College London. Data represent RNA-seq, surface protein measurements (CITE-seq) of 192 antibody targets, along with VDJ-seq profiling of single T cell and B cell receptors. Samples are pooled, with 4 donors per pool. Germ-line genotypes derived from previous single-cell RNA-sequencing are provided (VCF) to aid demultiplexing of single-cell and assignment to specific patient donor samples.
- 10/08/2021
- 21 samples
- DAC: EGAC00001002222
- Technology: Illumina NovaSeq 6000
Data sharing of Single-cell multi-omic profiling of human PBMCs, including adaptive immune cell receptor sequences derived from a cross-center cohort of COVID-19, & respiratory disease patients, along with healthy controls recruited via University College London.
Dummy policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005465 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005394161 | fastq.gz | 3.8 GB | ||
| EGAF00005394164 | fastq.gz | 3.9 GB | ||
| EGAF00005394167 | fastq.gz | 3.4 GB | ||
| EGAF00005394170 | fastq.gz | 3.4 GB | ||
| EGAF00005394173 | fastq.gz | 3.6 GB | ||
| EGAF00005394176 | fastq.gz | 4.1 GB | ||
| EGAF00005394179 | fastq.gz | 3.0 GB | ||
| EGAF00005394182 | fastq.gz | 4.3 GB | ||
| EGAF00005394185 | fastq.gz | 2.3 GB | ||
| EGAF00005394188 | fastq.gz | 4.3 GB | ||
| EGAF00005394191 | fastq.gz | 1.5 GB | ||
| EGAF00005394192 | fastq.gz | 13.4 GB | ||
| EGAF00005394193 | fastq.gz | 13.0 GB | ||
| EGAF00005394194 | fastq.gz | 887.5 MB | ||
| EGAF00005394195 | fastq.gz | 7.9 GB | ||
| EGAF00005394196 | fastq.gz | 8.1 GB | ||
| EGAF00005394197 | fastq.gz | 10.3 GB | ||
| EGAF00005394198 | fastq.gz | 1.1 GB | ||
| EGAF00005394199 | fastq.gz | 10.1 GB | ||
| EGAF00005394200 | fastq.gz | 8.4 GB | ||
| EGAF00005394201 | fastq.gz | 8.8 GB | ||
| EGAF00005394202 | fastq.gz | 1.2 GB | ||
| EGAF00005394203 | fastq.gz | 10.0 GB | ||
| EGAF00005394204 | fastq.gz | 968.5 MB | ||
| EGAF00005394205 | fastq.gz | 8.5 GB | ||
| EGAF00005394206 | fastq.gz | 8.8 GB | ||
| EGAF00005394207 | fastq.gz | 901.3 MB | ||
| EGAF00005394208 | fastq.gz | 7.3 GB | ||
| EGAF00005394209 | fastq.gz | 7.6 GB | ||
| EGAF00005394210 | fastq.gz | 504.1 MB | ||
| EGAF00005394211 | fastq.gz | 392.7 MB | ||
| EGAF00005394212 | fastq.gz | 3.9 GB | ||
| EGAF00005394213 | fastq.gz | 5.0 GB | ||
| EGAF00005394214 | fastq.gz | 3.9 GB | ||
| EGAF00005394215 | fastq.gz | 512.5 MB | ||
| EGAF00005394216 | fastq.gz | 5.1 GB | ||
| EGAF00005394217 | fastq.gz | 723.7 MB | ||
| EGAF00005394218 | fastq.gz | 7.5 GB | ||
| EGAF00005394219 | fastq.gz | 3.8 GB | ||
| EGAF00005394220 | fastq.gz | 508.8 MB | ||
| EGAF00005394221 | fastq.gz | 5.2 GB | ||
| EGAF00005394222 | fastq.gz | 5.2 GB | ||
| EGAF00005394223 | fastq.gz | 589.8 MB | ||
| EGAF00005394224 | fastq.gz | 5.9 GB | ||
| EGAF00005394225 | fastq.gz | 5.8 GB | ||
| EGAF00005394226 | fastq.gz | 332.6 MB | ||
| EGAF00005394227 | fastq.gz | 3.2 GB | ||
| EGAF00005394228 | fastq.gz | 3.3 GB | ||
| EGAF00005394229 | fastq.gz | 312.3 MB | ||
| EGAF00005394230 | fastq.gz | 3.0 GB | ||
| EGAF00005394231 | fastq.gz | 3.1 GB | ||
| EGAF00005394232 | fastq.gz | 388.3 MB | ||
| EGAF00005394233 | fastq.gz | 3.6 GB | ||
| EGAF00005394234 | fastq.gz | 3.9 GB | ||
| EGAF00005394235 | fastq.gz | 632.8 MB | ||
| EGAF00005394236 | fastq.gz | 6.1 GB | ||
| EGAF00005394237 | fastq.gz | 6.5 GB | ||
| EGAF00005394238 | fastq.gz | 374.6 MB | ||
| EGAF00005394239 | fastq.gz | 3.5 GB | ||
| EGAF00005394240 | fastq.gz | 3.7 GB | ||
| EGAF00005394241 | fastq.gz | 377.1 MB | ||
| EGAF00005394242 | fastq.gz | 3.6 GB | ||
| EGAF00005394243 | fastq.gz | 3.7 GB | ||
| EGAF00005394244 | fastq.gz | 337.1 MB | ||
| EGAF00005394245 | fastq.gz | 3.3 GB | ||
| EGAF00005394246 | fastq.gz | 3.3 GB | ||
| EGAF00005394247 | fastq.gz | 470.1 MB | ||
| EGAF00005394248 | fastq.gz | 4.9 GB | ||
| EGAF00005394249 | fastq.gz | 5.0 GB | ||
| EGAF00005394250 | fastq.gz | 1.5 GB | ||
| EGAF00005394251 | fastq.gz | 13.7 GB | ||
| EGAF00005394252 | fastq.gz | 13.2 GB | ||
| EGAF00005394253 | fastq.gz | 1.2 GB | ||
| EGAF00005394254 | fastq.gz | 10.5 GB | ||
| EGAF00005394255 | fastq.gz | 9.7 GB | ||
| EGAF00005394256 | fastq.gz | 987.6 MB | ||
| EGAF00005394257 | fastq.gz | 909.3 MB | ||
| EGAF00005394258 | fastq.gz | 7.7 GB | ||
| EGAF00005394259 | fastq.gz | 8.0 GB | ||
| EGAF00005394260 | fastq.gz | 10.5 GB | ||
| EGAF00005394261 | fastq.gz | 492.6 MB | ||
| EGAF00005394262 | fastq.gz | 5.1 GB | ||
| EGAF00005394263 | fastq.gz | 5.0 GB | ||
| EGAF00005394264 | fastq.gz | 5.2 GB | ||
| EGAF00005394265 | fastq.gz | 5.0 GB | ||
| EGAF00005394266 | fastq.gz | 3.9 GB | ||
| EGAF00005394267 | fastq.gz | 500.3 MB | ||
| EGAF00005394268 | fastq.gz | 4.9 GB | ||
| EGAF00005394269 | fastq.gz | 385.3 MB | ||
| EGAF00005394270 | fastq.gz | 4.0 GB | ||
| EGAF00005394271 | fastq.gz | 3.9 GB | ||
| EGAF00005394272 | fastq.gz | 391.1 MB | ||
| EGAF00005394273 | fastq.gz | 3.8 GB | ||
| EGAF00005394274 | fastq.gz | 5.0 GB | ||
| EGAF00005394275 | fastq.gz | 7.6 GB | ||
| EGAF00005394276 | fastq.gz | 375.4 MB | ||
| EGAF00005394277 | fastq.gz | 3.9 GB | ||
| EGAF00005394278 | fastq.gz | 426.7 MB | ||
| EGAF00005394279 | fastq.gz | 4.5 GB | ||
| EGAF00005394280 | fastq.gz | 4.4 GB | ||
| EGAF00005400375 | vcf | 2.6 MB | ||
| EGAF00005400376 | vcf | 2.8 MB | ||
| EGAF00005400378 | vcf | 3.1 MB | ||
| EGAF00005400379 | vcf | 3.0 MB | ||
| EGAF00005400380 | vcf | 3.3 MB | ||
| EGAF00005400381 | vcf | 3.3 MB | ||
| EGAF00005400382 | vcf | 3.0 MB | ||
| EGAF00005400383 | vcf | 3.1 MB | ||
| EGAF00005400384 | vcf | 3.3 MB | ||
| EGAF00005400385 | vcf | 3.3 MB | ||
| EGAF00005400386 | vcf | 3.0 MB | ||
| EGAF00005400387 | vcf | 2.8 MB | ||
| EGAF00005400388 | vcf | 2.6 MB | ||
| EGAF00005400389 | vcf | 2.8 MB | ||
| EGAF00005400390 | vcf | 3.1 MB | ||
| EGAF00005400391 | vcf | 3.0 MB | ||
| EGAF00005400392 | vcf | 3.3 MB | ||
| EGAF00005400393 | vcf | 3.3 MB | ||
| EGAF00005400394 | vcf | 3.0 MB | ||
| EGAF00005400395 | vcf | 2.8 MB | ||
| EGAF00005400396 | vcf | 3.3 MB | ||
| EGAF00005400397 | vcf | 3.3 MB | ||
| 122 Files (432.8 GB) | ||||