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WGS and Avenio Surveillance Panel data to previously submitted data under study number EGAS00001004276 of ALK-rearranged lung cancer

Some data was previously submitted data under study number EGAS00001004276. In this new dataset we provide additional WGS and Avenio Surveillance Panel data. We utilized 43 ALK+ NSCLC patients receiving targeted ALK therapy to evaluate ctDNA levels based on matched panel-based targeted next generation sequencing (tNGS) and untargeted shallow whole genome sequencing (sWGS). For the Avenio panel the sequencing was done on Illumina NextSeq 550 paired end 150 bp, for WGS the sequencing was done on Illumina HiSeq 4000, partly with KAPA_Hyper_Prep_Kit. In this dataset there are 132 WGS tumor samples and 134 panel sequencing data of plasma.

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005313922 1623077418515 1.8 GB
EGAF00005313923 1623077418515 1.9 GB
EGAF00005313924 1623077418515 1.6 GB
EGAF00005313925 1623077418515 1.7 GB
EGAF00005313926 1623077418515 1.9 GB
EGAF00005313927 1623077418515 2.9 GB
EGAF00005313928 1623077418515 2.1 GB
EGAF00005313929 1623077418515 1.9 GB
EGAF00005313930 1623077418515 1.4 GB
EGAF00005313931 1623077418515 1.7 GB
EGAF00005313932 1623079301405 2.0 GB
EGAF00005313933 1623077418515 1.9 GB
EGAF00005313934 1623077418515 1.4 GB
EGAF00005313935 1623077418515 1.4 GB
EGAF00005313936 1623077418515 1.5 GB
EGAF00005313937 1623077418515 1.3 GB
EGAF00005313938 1623077418515 1.5 GB
EGAF00005313939 1623077418515 1.3 GB
EGAF00005313940 1623077418515 1.4 GB
EGAF00005313941 1623077418515 1.2 GB
EGAF00005313942 1623077418515 2.2 GB
EGAF00005313943 1623077418515 2.4 GB
EGAF00005313944 1623077418515 3.0 GB
EGAF00005313945 1623078123667 1.6 GB
EGAF00005313946 1623078123667 2.4 GB
EGAF00005313947 1623078123666 2.2 GB
EGAF00005313948 1623078123667 2.8 GB
EGAF00005313949 1623078123666 1.8 GB
EGAF00005313950 1623078123666 1.8 GB
EGAF00005313951 1623078123666 1.9 GB
EGAF00005313952 1623078123666 1.8 GB
EGAF00005313953 1623078123666 1.4 GB
EGAF00005313954 1623078123666 1.8 GB
EGAF00005313955 1623078123666 1.3 GB
EGAF00005313956 1623078123666 1.2 GB
EGAF00005313957 1623078123666 1.2 GB
EGAF00005313958 1623078123666 1.2 GB
EGAF00005313959 1623078123666 1.6 GB
EGAF00005313960 1623078123666 1.4 GB
EGAF00005313961 1623078123666 1.3 GB
EGAF00005313962 1623078123666 1.3 GB
EGAF00005313963 1623078123666 1.6 GB
EGAF00005313964 1623078123666 1.3 GB
EGAF00005313965 1623078123666 1.2 GB
EGAF00005313966 1623078123666 1.1 GB
EGAF00005313967 1623078123666 711.8 MB
EGAF00005313968 1623078123666 1.0 GB
EGAF00005313969 1623078123666 1.2 GB
EGAF00005313970 1623078123666 1.1 GB
EGAF00005313971 1623078123666 835.8 MB
EGAF00005313972 1623078123666 1.2 GB
EGAF00005313973 1623078123666 874.9 MB
EGAF00005313974 1623078123666 1.5 GB
EGAF00005313975 1623078123666 653.3 MB
EGAF00005313976 1623078123666 1.4 GB
EGAF00005313977 1623078123666 2.0 GB
EGAF00005313978 1623078123667 1.9 GB
EGAF00005313979 1623078123667 1.7 GB
EGAF00005313980 1623078123667 1.7 GB
EGAF00005313981 1623079874873 1.3 GB
EGAF00005313994 1623078123666 1.5 GB
EGAF00005313995 1623078123666 1.5 GB
EGAF00005313996 1623078123666 1.9 GB
EGAF00005313997 1623078123666 1.4 GB
EGAF00005313998 1623079301405 1.3 GB
EGAF00005313999 1623079301405 1.3 GB
EGAF00005314000 1623079301405 1.0 GB
EGAF00005314001 1623079301405 1.3 GB
EGAF00005314006 1623079301405 1.7 GB
EGAF00005314007 1623079301405 785.1 MB
EGAF00005314008 1623079301405 1.2 GB
EGAF00005314019 1623079301405 1.5 GB
EGAF00005314020 1623079301405 1.5 GB
EGAF00005314023 1623079301405 1.7 GB
EGAF00005314026 1623079301405 2.6 GB
EGAF00005314033 1623079343413 1.4 GB
EGAF00005314034 1623079343413 1.8 GB
EGAF00005314035 1623079343413 1.7 GB
EGAF00005314036 1623079343413 1.5 GB
EGAF00005314037 1623079343413 1.3 GB
EGAF00005314038 1623079343413 1.5 GB
EGAF00005314039 1623079343413 1.3 GB
EGAF00005314040 1623079343413 1.5 GB
EGAF00005314041 1623079343413 1.7 GB
EGAF00005314042 1623079343413 1.6 GB
EGAF00005314043 1623079343413 1.5 GB
EGAF00005314044 1623079343413 1.2 GB
EGAF00005314045 1623079343413 1.4 GB
EGAF00005314050 1623079343413 1.1 GB
EGAF00005314055 1623079343413 1.8 GB
EGAF00005314058 1623079343413 1.3 GB
EGAF00005314059 1623079343413 1.9 GB
EGAF00005314060 1623079343413 1.7 GB
EGAF00005314061 1623079343413 1.5 GB
EGAF00005314062 1623079343413 1.5 GB
EGAF00005314063 1623079343413 1.3 GB
EGAF00005314064 1623079343413 1.2 GB
EGAF00005314065 1623079343413 1.2 GB
EGAF00005314066 1623079343413 1.5 GB
EGAF00005314067 1623079343413 687.6 MB
EGAF00005314068 1623079343413 1.3 GB
EGAF00005314081 1623079343413 1.1 GB
EGAF00005314082 1623079343413 1.2 GB
EGAF00005314083 1623079343413 1.4 GB
EGAF00005314084 1623079343413 1.5 GB
EGAF00005314085 1623079343413 1.0 GB
EGAF00005314086 1623079343413 959.3 MB
EGAF00005314087 1623079343413 1.6 GB
EGAF00005314088 1623079343413 1.4 GB
EGAF00005314089 1623079343413 1.2 GB
EGAF00005314090 1623079343413 1.7 GB
EGAF00005314091 1623079343413 1.4 GB
EGAF00005314092 1623079343413 2.2 GB
EGAF00005314093 1623079343413 1.5 GB
EGAF00005314094 1623079343413 773.4 MB
EGAF00005314095 1623079343413 1.5 GB
EGAF00005314096 1623079343413 2.4 GB
EGAF00005314097 1623079343413 1.4 GB
EGAF00005314098 1623079343413 1.4 GB
EGAF00005314111 1623079874873 1.1 GB
EGAF00005314112 1623079874873 1.2 GB
EGAF00005314113 1623079874873 902.8 MB
EGAF00005314114 1623079874873 1.2 GB
EGAF00005314115 1623079874873 1.3 GB
EGAF00005314116 1623079874873 1.3 GB
EGAF00005314117 1623079874873 1.3 GB
EGAF00005314118 1623079874873 1.3 GB
EGAF00005314119 1623079874873 1.4 GB
EGAF00005314130 1623079874873 1.3 GB
EGAF00005314131 1623079874873 1.5 GB
EGAF00005314132 1623079874873 1.1 GB
EGAF00005314133 1623079874873 1.2 GB
EGAF00005314134 1623079874873 977.1 MB
EGAF00005314135 1623079874873 1.5 GB
EGAF00005314136 1623079874873 1.6 GB
EGAF00005314261 1623080539679 486.4 MB
EGAF00005314262 1623080539679 616.4 MB
EGAF00005314273 1623081348882 242.7 MB
EGAF00005314274 1623081348882 275.3 MB
EGAF00005314275 1623081348882 158.0 MB
EGAF00005314276 1623081348882 167.3 MB
EGAF00005314277 1623081348882 241.0 MB
EGAF00005314278 1623081348882 267.9 MB
EGAF00005314279 1623081348882 274.4 MB
EGAF00005314280 1623081348882 290.1 MB
EGAF00005314281 1623081348882 377.8 MB
EGAF00005314282 1623081348882 400.9 MB
EGAF00005314283 1623081348882 303.3 MB
EGAF00005314284 1623081348882 345.1 MB
EGAF00005314285 1623081348882 257.9 MB
EGAF00005314286 1623081348882 290.4 MB
EGAF00005314287 1623081348882 285.7 MB
EGAF00005314288 1623081348882 330.5 MB
EGAF00005314289 1623081348882 340.1 MB
EGAF00005314290 1623081348882 396.5 MB
EGAF00005314291 1623081348882 243.8 MB
EGAF00005314292 1623081348882 292.1 MB
EGAF00005314293 1623081348882 270.1 MB
EGAF00005314294 1623081348882 307.5 MB
EGAF00005314297 1623081348882 191.1 MB
EGAF00005314298 1623081348882 232.2 MB
EGAF00005314303 1623081348882 283.7 MB
EGAF00005314304 1623081348882 346.1 MB
EGAF00005314307 1623081348882 290.5 MB
EGAF00005314308 1623081348882 354.8 MB
EGAF00005314311 1623081348882 298.7 MB
EGAF00005314312 1623081348882 336.1 MB
EGAF00005314313 1623081348882 185.7 MB
EGAF00005314314 1623081348882 213.3 MB
EGAF00005314315 1623081348882 189.5 MB
EGAF00005314316 1623081348882 217.2 MB
EGAF00005314317 1623081348882 231.8 MB
EGAF00005314318 1623081348882 278.3 MB
EGAF00005314319 1623081992208 334.2 MB
EGAF00005314320 1623081992208 379.2 MB
EGAF00005314321 1623081992208 201.1 MB
EGAF00005314322 1623081992208 232.9 MB
EGAF00005314323 1623081992208 216.5 MB
EGAF00005314324 1623081992208 245.4 MB
EGAF00005314325 1623081992208 262.3 MB
EGAF00005314326 1623081992208 305.2 MB
EGAF00005314327 1623081992208 353.0 MB
EGAF00005314328 1623081992208 402.6 MB
EGAF00005314329 1623081992208 243.0 MB
EGAF00005314330 1623081992208 275.6 MB
EGAF00005314331 1623081992208 215.8 MB
EGAF00005314332 1623081992208 246.5 MB
EGAF00005314333 1623081992208 255.0 MB
EGAF00005314334 1623081992208 294.6 MB
EGAF00005314341 1623081992208 295.7 MB
EGAF00005314342 1623081992208 338.5 MB
EGAF00005314345 1623081992208 228.0 MB
EGAF00005314346 1623081992208 253.2 MB
EGAF00005314347 1623081992208 154.7 MB
EGAF00005314348 1623081992208 170.1 MB
EGAF00005314349 1623081992208 317.9 MB
EGAF00005314350 1623081992208 350.9 MB
EGAF00005314351 1623081992208 268.9 MB
EGAF00005314352 1623081992208 298.8 MB
EGAF00005314353 1623081992208 214.9 MB
EGAF00005314354 1623081992208 238.5 MB
EGAF00005314355 1623081992208 381.5 MB
EGAF00005314356 1623081992208 428.4 MB
EGAF00005314357 1623081992208 210.6 MB
EGAF00005314358 1623081992208 234.8 MB
EGAF00005314359 1623081992208 252.7 MB
EGAF00005314360 1623081992208 285.2 MB
EGAF00005314361 1623081992208 320.1 MB
EGAF00005314362 1623081992208 360.2 MB
EGAF00005314363 1623081992208 260.9 MB
EGAF00005314364 1623081992208 332.3 MB
EGAF00005314365 1623081992208 281.7 MB
EGAF00005314366 1623081992208 357.3 MB
EGAF00005314367 1623081992208 189.7 MB
EGAF00005314368 1623081992208 210.0 MB
EGAF00005314379 1623081992208 210.0 MB
EGAF00005314380 1623083134480 230.3 MB
EGAF00005314381 1623083134480 312.6 MB
EGAF00005314382 1623083134480 378.2 MB
EGAF00005314383 1623083134480 321.4 MB
EGAF00005314384 1623083134480 356.4 MB
EGAF00005314385 1623083134480 293.0 MB
EGAF00005314386 1623083134481 354.2 MB
EGAF00005314387 1623083134481 162.1 MB
EGAF00005314388 1623083134481 196.9 MB
EGAF00005314389 1623083134480 380.7 MB
EGAF00005314390 1623083134480 459.6 MB
EGAF00005314391 1623083134481 195.5 MB
EGAF00005314392 1623083134480 217.7 MB
EGAF00005314393 1623083134480 220.2 MB
EGAF00005314394 1623083134480 243.6 MB
EGAF00005314395 1623083134480 338.0 MB
EGAF00005314396 1623083134481 377.2 MB
EGAF00005314397 1623083134481 249.1 MB
EGAF00005314398 1623083134480 301.5 MB
EGAF00005314399 1623083134480 251.1 MB
EGAF00005314400 1623083134480 278.3 MB
EGAF00005314401 1623083134480 282.1 MB
EGAF00005314402 1623083134480 305.7 MB
EGAF00005314403 1623083134480 251.7 MB
EGAF00005314404 1623083134480 276.7 MB
EGAF00005314405 1623083134480 271.0 MB
EGAF00005314406 1623083134480 294.0 MB
EGAF00005314407 1623083134480 325.7 MB
EGAF00005314408 1623083134480 356.8 MB
EGAF00005314409 1623083134480 336.6 MB
EGAF00005314410 1623083134480 378.1 MB
EGAF00005314411 1623083134480 329.6 MB
EGAF00005314412 1623083134480 370.2 MB
EGAF00005314413 1623083134480 268.4 MB
EGAF00005314414 1623083134481 300.0 MB
EGAF00005314415 1623083134481 234.9 MB
EGAF00005314416 1623083134481 263.0 MB
EGAF00005314417 1623083134480 388.1 MB
EGAF00005314418 1623083134480 433.3 MB
EGAF00005314419 1623083134480 284.2 MB
EGAF00005314420 1623083134480 316.0 MB
EGAF00005314421 1623083134480 322.0 MB
EGAF00005314422 1623083134480 362.9 MB
EGAF00005314423 1623083134480 335.1 MB
EGAF00005314424 1623083134480 374.4 MB
EGAF00005314425 1623083134480 317.0 kB
EGAF00005314426 1623083134480 343.9 kB
EGAF00005314427 1623083134480 221.6 MB
EGAF00005314428 1623083134480 269.4 MB
EGAF00005314429 1623083134480 298.7 MB
EGAF00005314430 1623083134480 359.9 MB
EGAF00005314431 1623083134480 253.6 MB
EGAF00005314432 1623083134481 286.3 MB
EGAF00005314433 1623083134481 225.4 MB
EGAF00005314434 1623083134481 255.2 MB
EGAF00005314435 1623083134481 270.7 MB
EGAF00005314436 1623083541729 315.4 MB
EGAF00005314437 1623083541729 194.1 MB
EGAF00005314438 1623083541729 234.0 MB
EGAF00005314439 1623083541729 259.9 MB
EGAF00005314440 1623083541729 285.2 MB
EGAF00005314441 1623083541729 471.4 MB
EGAF00005314442 1623083541729 519.2 MB
EGAF00005314443 1623083541729 220.2 MB
EGAF00005314444 1623083541729 243.8 MB
EGAF00005314445 1623083541729 221.5 MB
EGAF00005314446 1623083541729 243.8 MB
EGAF00005314447 1623083541729 343.7 MB
EGAF00005314448 1623083541729 430.2 MB
EGAF00005314449 1623083541729 337.7 MB
EGAF00005314450 1623083541729 421.2 MB
EGAF00005314451 1623083541729 230.6 MB
EGAF00005314452 1623083541729 255.7 MB
EGAF00005314453 1623083541729 336.0 MB
EGAF00005314454 1623083541729 380.3 MB
EGAF00005314455 1623083541729 350.3 MB
EGAF00005314456 1623083541729 384.7 MB
EGAF00005314457 1623083541729 261.9 MB
EGAF00005314458 1623083541729 290.8 MB
EGAF00005314459 1623083541729 276.6 MB
EGAF00005314460 1623083541729 309.0 MB
EGAF00005314461 1623083541729 238.1 MB
EGAF00005314462 1623083541729 265.1 MB
EGAF00005314463 1623083541729 298.8 MB
EGAF00005314464 1623083541729 369.8 MB
EGAF00005314465 1623083541729 265.4 MB
EGAF00005314466 1623083541729 333.4 MB
EGAF00005314467 1623083541729 284.8 MB
EGAF00005314468 1623083541729 313.7 MB
EGAF00005314469 1623083541729 243.7 MB
EGAF00005314470 1623083541729 277.0 MB
EGAF00005314471 1623083541729 223.0 MB
EGAF00005314472 1623083541729 276.2 MB
EGAF00005314473 1623083541729 337.7 MB
EGAF00005314474 1623083541729 378.9 MB
EGAF00005314475 1623083541729 195.3 MB
EGAF00005314476 1623083541729 242.6 MB
EGAF00005314477 1623083541729 338.5 MB
EGAF00005314478 1623083541729 380.1 MB
EGAF00005314479 1623083541729 237.7 MB
EGAF00005314480 1623083541729 265.0 MB
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EGAF00005314482 1623083541729 327.3 MB
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EGAF00005314484 1623083541729 335.6 MB
EGAF00005314485 1623083541729 230.7 MB
EGAF00005314486 1623083541729 255.9 MB
EGAF00005314487 1623083541729 285.7 MB
EGAF00005314488 1623083541729 341.6 MB
EGAF00005314489 1623083541729 215.3 MB
EGAF00005314490 1623083541729 236.4 MB
EGAF00005314491 1623083541729 227.1 MB
EGAF00005314492 1623083541729 250.5 MB
EGAF00005314493 1623083541729 162.5 MB
EGAF00005314494 1623083541729 201.5 MB
EGAF00005314495 1623083541729 378.6 MB
EGAF00005314496 1623083541729 476.2 MB
EGAF00005314497 1623083541729 287.1 MB
EGAF00005314498 1623083541729 329.4 MB
EGAF00005314499 1623083541729 155.3 MB
EGAF00005314500 1623083541729 190.6 MB
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EGAF00005314502 1623083598385 311.1 MB
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EGAF00005314505 1623083598385 123.2 MB
EGAF00005314506 1623083598385 152.9 MB
EGAF00005314507 1623083598385 214.6 MB
EGAF00005314508 1623083598385 225.5 MB
EGAF00005314509 1623083598385 236.1 MB
EGAF00005314510 1623083598385 249.4 MB
EGAF00005314511 1623083598385 311.4 MB
EGAF00005314512 1623083598385 353.0 MB
EGAF00005314513 1623083598385 184.6 MB
EGAF00005314514 1623083598385 228.3 MB
EGAF00005314515 1623083598385 113.2 MB
EGAF00005314516 1623083598385 128.7 MB
EGAF00005314517 1623083598385 247.7 MB
EGAF00005314518 1623083598385 281.9 MB
EGAF00005314519 1623083598385 137.2 MB
EGAF00005314520 1623083598385 156.2 MB
EGAF00005314521 1623083598385 184.8 MB
EGAF00005314522 1623083598385 209.3 MB
EGAF00005314523 1623083598385 160.7 MB
EGAF00005314524 1623083598385 182.8 MB
EGAF00005314525 1623083598385 145.8 MB
EGAF00005314526 1623083598385 165.4 MB
EGAF00005314527 1623083598385 155.4 MB
EGAF00005314528 1623083598385 165.0 MB
EGAF00005314529 1623083598385 296.4 MB
EGAF00005314530 1623083598385 312.5 MB
EGAF00005314531 1623083598385 297.1 MB
EGAF00005314532 1623083598385 330.6 MB
EGAF00005314533 1623083598385 204.4 MB
EGAF00005314534 1623083598385 230.8 MB
EGAF00005314535 1623083598385 319.4 MB
EGAF00005314536 1623083598385 361.5 MB
EGAF00005314537 1623083598385 228.2 MB
EGAF00005314538 1623083598385 259.6 MB
EGAF00005314539 1623083598385 162.6 MB
EGAF00005314540 1623083598385 180.9 MB
EGAF00005314541 1623083598385 249.7 MB
EGAF00005314542 1623083598385 279.0 MB
EGAF00005314543 1623083598385 275.0 MB
EGAF00005314544 1623083598385 334.9 MB
EGAF00005314545 1623083598385 187.9 MB
EGAF00005314546 1623083598385 231.1 MB
EGAF00005314547 1623083598385 293.2 MB
EGAF00005314548 1623083598385 308.1 MB
EGAF00005314549 1623083598385 144.2 MB
EGAF00005314550 1623083598385 153.0 MB
EGAF00005314551 1623083598385 165.1 MB
EGAF00005314552 1623083598385 183.2 MB
EGAF00005314553 1623083598385 351.7 MB
EGAF00005314554 1623083598385 371.7 MB
EGAF00005314555 1623083598385 235.4 MB
EGAF00005314556 1623083598385 259.5 MB
EGAF00005314557 1623083598385 271.7 MB
EGAF00005314558 1623083598385 289.8 MB
EGAF00005333220 1625141412804 284.9 MB
EGAF00005333221 1625141412804 348.6 MB
397 Files (273.3 GB)