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WGS and Avenio Surveillance Panel data to previously submitted data under study number EGAS00001004276 of ALK-rearranged lung cancer

Some data was previously submitted data under study number EGAS00001004276. In this new dataset we provide additional WGS and Avenio Surveillance Panel data. We utilized 43 ALK+ NSCLC patients receiving targeted ALK therapy to evaluate ctDNA levels based on matched panel-based targeted next generation sequencing (tNGS) and untargeted shallow whole genome sequencing (sWGS). For the Avenio panel the sequencing was done on Illumina NextSeq 550 paired end 150 bp, for WGS the sequencing was done on Illumina HiSeq 4000, partly with KAPA_Hyper_Prep_Kit. In this dataset there are 132 WGS tumor samples and 134 panel sequencing data of plasma.

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005327 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005313922 bam 1.8 GB
EGAF00005313923 bam 1.9 GB
EGAF00005313924 bam 1.6 GB
EGAF00005313925 bam 1.7 GB
EGAF00005313926 bam 1.9 GB
EGAF00005313927 bam 2.9 GB
EGAF00005313928 bam 2.1 GB
EGAF00005313929 bam 1.9 GB
EGAF00005313930 bam 1.4 GB
EGAF00005313931 bam 1.7 GB
EGAF00005313932 bam 2.0 GB
EGAF00005313933 bam 1.9 GB
EGAF00005313934 bam 1.4 GB
EGAF00005313935 bam 1.4 GB
EGAF00005313936 bam 1.5 GB
EGAF00005313937 bam 1.3 GB
EGAF00005313938 bam 1.5 GB
EGAF00005313939 bam 1.3 GB
EGAF00005313940 bam 1.4 GB
EGAF00005313941 bam 1.2 GB
EGAF00005313942 bam 2.2 GB
EGAF00005313943 bam 2.4 GB
EGAF00005313944 bam 3.0 GB
EGAF00005313945 bam 1.6 GB
EGAF00005313946 bam 2.4 GB
EGAF00005313947 bam 2.2 GB
EGAF00005313948 bam 2.8 GB
EGAF00005313949 bam 1.8 GB
EGAF00005313950 bam 1.8 GB
EGAF00005313951 bam 1.9 GB
EGAF00005313952 bam 1.8 GB
EGAF00005313953 bam 1.4 GB
EGAF00005313954 bam 1.8 GB
EGAF00005313955 bam 1.3 GB
EGAF00005313956 bam 1.2 GB
EGAF00005313957 bam 1.2 GB
EGAF00005313958 bam 1.2 GB
EGAF00005313959 bam 1.6 GB
EGAF00005313960 bam 1.4 GB
EGAF00005313961 bam 1.3 GB
EGAF00005313962 bam 1.3 GB
EGAF00005313963 bam 1.6 GB
EGAF00005313964 bam 1.3 GB
EGAF00005313965 bam 1.2 GB
EGAF00005313966 bam 1.1 GB
EGAF00005313967 bam 711.8 MB
EGAF00005313968 bam 1.0 GB
EGAF00005313969 bam 1.2 GB
EGAF00005313970 bam 1.1 GB
EGAF00005313971 bam 835.8 MB
EGAF00005313972 bam 1.2 GB
EGAF00005313973 bam 874.9 MB
EGAF00005313974 bam 1.5 GB
EGAF00005313975 bam 653.3 MB
EGAF00005313976 bam 1.4 GB
EGAF00005313977 bam 2.0 GB
EGAF00005313978 bam 1.9 GB
EGAF00005313979 bam 1.7 GB
EGAF00005313980 bam 1.7 GB
EGAF00005313981 bam 1.3 GB
EGAF00005313994 bam 1.5 GB
EGAF00005313995 bam 1.5 GB
EGAF00005313996 bam 1.9 GB
EGAF00005313997 bam 1.4 GB
EGAF00005313998 bam 1.3 GB
EGAF00005313999 bam 1.3 GB
EGAF00005314000 bam 1.0 GB
EGAF00005314001 bam 1.3 GB
EGAF00005314006 bam 1.7 GB
EGAF00005314007 bam 785.1 MB
EGAF00005314008 bam 1.2 GB
EGAF00005314019 bam 1.5 GB
EGAF00005314020 bam 1.5 GB
EGAF00005314023 bam 1.7 GB
EGAF00005314026 bam 2.6 GB
EGAF00005314033 bam 1.4 GB
EGAF00005314034 bam 1.8 GB
EGAF00005314035 bam 1.7 GB
EGAF00005314036 bam 1.5 GB
EGAF00005314037 bam 1.3 GB
EGAF00005314038 bam 1.5 GB
EGAF00005314039 bam 1.3 GB
EGAF00005314040 bam 1.5 GB
EGAF00005314041 bam 1.7 GB
EGAF00005314042 bam 1.6 GB
EGAF00005314043 bam 1.5 GB
EGAF00005314044 bam 1.2 GB
EGAF00005314045 bam 1.4 GB
EGAF00005314050 bam 1.1 GB
EGAF00005314055 bam 1.8 GB
EGAF00005314058 bam 1.3 GB
EGAF00005314059 bam 1.9 GB
EGAF00005314060 bam 1.7 GB
EGAF00005314061 bam 1.5 GB
EGAF00005314062 bam 1.5 GB
EGAF00005314063 bam 1.3 GB
EGAF00005314064 bam 1.2 GB
EGAF00005314065 bam 1.2 GB
EGAF00005314066 bam 1.5 GB
EGAF00005314067 bam 687.6 MB
EGAF00005314068 bam 1.3 GB
EGAF00005314081 bam 1.1 GB
EGAF00005314082 bam 1.2 GB
EGAF00005314083 bam 1.4 GB
EGAF00005314084 bam 1.5 GB
EGAF00005314085 bam 1.0 GB
EGAF00005314086 bam 959.3 MB
EGAF00005314087 bam 1.6 GB
EGAF00005314088 bam 1.4 GB
EGAF00005314089 bam 1.2 GB
EGAF00005314090 bam 1.7 GB
EGAF00005314091 bam 1.4 GB
EGAF00005314092 bam 2.2 GB
EGAF00005314093 bam 1.5 GB
EGAF00005314094 bam 773.4 MB
EGAF00005314095 bam 1.5 GB
EGAF00005314096 bam 2.4 GB
EGAF00005314097 bam 1.4 GB
EGAF00005314098 bam 1.4 GB
EGAF00005314111 bam 1.1 GB
EGAF00005314112 bam 1.2 GB
EGAF00005314113 bam 902.8 MB
EGAF00005314114 bam 1.2 GB
EGAF00005314115 bam 1.3 GB
EGAF00005314116 bam 1.3 GB
EGAF00005314117 bam 1.3 GB
EGAF00005314118 bam 1.3 GB
EGAF00005314119 bam 1.4 GB
EGAF00005314130 bam 1.3 GB
EGAF00005314131 bam 1.5 GB
EGAF00005314132 bam 1.1 GB
EGAF00005314133 bam 1.2 GB
EGAF00005314134 bam 977.1 MB
EGAF00005314135 bam 1.5 GB
EGAF00005314136 bam 1.6 GB
EGAF00005314261 fastq.gz 486.4 MB
EGAF00005314262 fastq.gz 616.4 MB
EGAF00005314273 fastq.gz 242.7 MB
EGAF00005314274 fastq.gz 275.3 MB
EGAF00005314275 fastq.gz 158.0 MB
EGAF00005314276 fastq.gz 167.3 MB
EGAF00005314277 fastq.gz 241.0 MB
EGAF00005314278 fastq.gz 267.9 MB
EGAF00005314279 fastq.gz 274.4 MB
EGAF00005314280 fastq.gz 290.1 MB
EGAF00005314281 fastq.gz 377.8 MB
EGAF00005314282 fastq.gz 400.9 MB
EGAF00005314283 fastq.gz 303.3 MB
EGAF00005314284 fastq.gz 345.1 MB
EGAF00005314285 fastq.gz 257.9 MB
EGAF00005314286 fastq.gz 290.4 MB
EGAF00005314287 fastq.gz 285.7 MB
EGAF00005314288 fastq.gz 330.5 MB
EGAF00005314289 fastq.gz 340.1 MB
EGAF00005314290 fastq.gz 396.5 MB
EGAF00005314291 fastq.gz 243.8 MB
EGAF00005314292 fastq.gz 292.1 MB
EGAF00005314293 fastq.gz 270.1 MB
EGAF00005314294 fastq.gz 307.5 MB
EGAF00005314297 fastq.gz 191.1 MB
EGAF00005314298 fastq.gz 232.2 MB
EGAF00005314303 fastq.gz 283.7 MB
EGAF00005314304 fastq.gz 346.1 MB
EGAF00005314307 fastq.gz 290.5 MB
EGAF00005314308 fastq.gz 354.8 MB
EGAF00005314311 fastq.gz 298.7 MB
EGAF00005314312 fastq.gz 336.1 MB
EGAF00005314313 fastq.gz 185.7 MB
EGAF00005314314 fastq.gz 213.3 MB
EGAF00005314315 fastq.gz 189.5 MB
EGAF00005314316 fastq.gz 217.2 MB
EGAF00005314317 fastq.gz 231.8 MB
EGAF00005314318 fastq.gz 278.3 MB
EGAF00005314319 fastq.gz 334.2 MB
EGAF00005314320 fastq.gz 379.2 MB
EGAF00005314321 fastq.gz 201.1 MB
EGAF00005314322 fastq.gz 232.9 MB
EGAF00005314323 fastq.gz 216.5 MB
EGAF00005314324 fastq.gz 245.4 MB
EGAF00005314325 fastq.gz 262.3 MB
EGAF00005314326 fastq.gz 305.2 MB
EGAF00005314327 fastq.gz 353.0 MB
EGAF00005314328 fastq.gz 402.6 MB
EGAF00005314329 fastq.gz 243.0 MB
EGAF00005314330 fastq.gz 275.6 MB
EGAF00005314331 fastq.gz 215.8 MB
EGAF00005314332 fastq.gz 246.5 MB
EGAF00005314333 fastq.gz 255.0 MB
EGAF00005314334 fastq.gz 294.6 MB
EGAF00005314341 fastq.gz 295.7 MB
EGAF00005314342 fastq.gz 338.5 MB
EGAF00005314345 fastq.gz 228.0 MB
EGAF00005314346 fastq.gz 253.2 MB
EGAF00005314347 fastq.gz 154.7 MB
EGAF00005314348 fastq.gz 170.1 MB
EGAF00005314349 fastq.gz 317.9 MB
EGAF00005314350 fastq.gz 350.9 MB
EGAF00005314351 fastq.gz 268.9 MB
EGAF00005314352 fastq.gz 298.8 MB
EGAF00005314353 fastq.gz 214.9 MB
EGAF00005314354 fastq.gz 238.5 MB
EGAF00005314355 fastq.gz 381.5 MB
EGAF00005314356 fastq.gz 428.4 MB
EGAF00005314357 fastq.gz 210.6 MB
EGAF00005314358 fastq.gz 234.8 MB
EGAF00005314359 fastq.gz 252.7 MB
EGAF00005314360 fastq.gz 285.2 MB
EGAF00005314361 fastq.gz 320.1 MB
EGAF00005314362 fastq.gz 360.2 MB
EGAF00005314363 fastq.gz 260.9 MB
EGAF00005314364 fastq.gz 332.3 MB
EGAF00005314365 fastq.gz 281.7 MB
EGAF00005314366 fastq.gz 357.3 MB
EGAF00005314367 fastq.gz 189.7 MB
EGAF00005314368 fastq.gz 210.0 MB
EGAF00005314379 fastq.gz 210.0 MB
EGAF00005314380 fastq.gz 230.3 MB
EGAF00005314381 fastq.gz 312.6 MB
EGAF00005314382 fastq.gz 378.2 MB
EGAF00005314383 fastq.gz 321.4 MB
EGAF00005314384 fastq.gz 356.4 MB
EGAF00005314385 fastq.gz 293.0 MB
EGAF00005314386 fastq.gz 354.2 MB
EGAF00005314387 fastq.gz 162.1 MB
EGAF00005314388 fastq.gz 196.9 MB
EGAF00005314389 fastq.gz 380.7 MB
EGAF00005314390 fastq.gz 459.6 MB
EGAF00005314391 fastq.gz 195.5 MB
EGAF00005314392 fastq.gz 217.7 MB
EGAF00005314393 fastq.gz 220.2 MB
EGAF00005314394 fastq.gz 243.6 MB
EGAF00005314395 fastq.gz 338.0 MB
EGAF00005314396 fastq.gz 377.2 MB
EGAF00005314397 fastq.gz 249.1 MB
EGAF00005314398 fastq.gz 301.5 MB
EGAF00005314399 fastq.gz 251.1 MB
EGAF00005314400 fastq.gz 278.3 MB
EGAF00005314401 fastq.gz 282.1 MB
EGAF00005314402 fastq.gz 305.7 MB
EGAF00005314403 fastq.gz 251.7 MB
EGAF00005314404 fastq.gz 276.7 MB
EGAF00005314405 fastq.gz 271.0 MB
EGAF00005314406 fastq.gz 294.0 MB
EGAF00005314407 fastq.gz 325.7 MB
EGAF00005314408 fastq.gz 356.8 MB
EGAF00005314409 fastq.gz 336.6 MB
EGAF00005314410 fastq.gz 378.1 MB
EGAF00005314411 fastq.gz 329.6 MB
EGAF00005314412 fastq.gz 370.2 MB
EGAF00005314413 fastq.gz 268.4 MB
EGAF00005314414 fastq.gz 300.0 MB
EGAF00005314415 fastq.gz 234.9 MB
EGAF00005314416 fastq.gz 263.0 MB
EGAF00005314417 fastq.gz 388.1 MB
EGAF00005314418 fastq.gz 433.3 MB
EGAF00005314419 fastq.gz 284.2 MB
EGAF00005314420 fastq.gz 316.0 MB
EGAF00005314421 fastq.gz 322.0 MB
EGAF00005314422 fastq.gz 362.9 MB
EGAF00005314423 fastq.gz 335.1 MB
EGAF00005314424 fastq.gz 374.4 MB
EGAF00005314425 fastq.gz 317.0 kB
EGAF00005314426 fastq.gz 343.9 kB
EGAF00005314427 fastq.gz 221.6 MB
EGAF00005314428 fastq.gz 269.4 MB
EGAF00005314429 fastq.gz 298.7 MB
EGAF00005314430 fastq.gz 359.9 MB
EGAF00005314431 fastq.gz 253.6 MB
EGAF00005314432 fastq.gz 286.3 MB
EGAF00005314433 fastq.gz 225.4 MB
EGAF00005314434 fastq.gz 255.2 MB
EGAF00005314435 fastq.gz 270.7 MB
EGAF00005314436 fastq.gz 315.4 MB
EGAF00005314437 fastq.gz 194.1 MB
EGAF00005314438 fastq.gz 234.0 MB
EGAF00005314439 fastq.gz 259.9 MB
EGAF00005314440 fastq.gz 285.2 MB
EGAF00005314441 fastq.gz 471.4 MB
EGAF00005314442 fastq.gz 519.2 MB
EGAF00005314443 fastq.gz 220.2 MB
EGAF00005314444 fastq.gz 243.8 MB
EGAF00005314445 fastq.gz 221.5 MB
EGAF00005314446 fastq.gz 243.8 MB
EGAF00005314447 fastq.gz 343.7 MB
EGAF00005314448 fastq.gz 430.2 MB
EGAF00005314449 fastq.gz 337.7 MB
EGAF00005314450 fastq.gz 421.2 MB
EGAF00005314451 fastq.gz 230.6 MB
EGAF00005314452 fastq.gz 255.7 MB
EGAF00005314453 fastq.gz 336.0 MB
EGAF00005314454 fastq.gz 380.3 MB
EGAF00005314455 fastq.gz 350.3 MB
EGAF00005314456 fastq.gz 384.7 MB
EGAF00005314457 fastq.gz 261.9 MB
EGAF00005314458 fastq.gz 290.8 MB
EGAF00005314459 fastq.gz 276.6 MB
EGAF00005314460 fastq.gz 309.0 MB
EGAF00005314461 fastq.gz 238.1 MB
EGAF00005314462 fastq.gz 265.1 MB
EGAF00005314463 fastq.gz 298.8 MB
EGAF00005314464 fastq.gz 369.8 MB
EGAF00005314465 fastq.gz 265.4 MB
EGAF00005314466 fastq.gz 333.4 MB
EGAF00005314467 fastq.gz 284.8 MB
EGAF00005314468 fastq.gz 313.7 MB
EGAF00005314469 fastq.gz 243.7 MB
EGAF00005314470 fastq.gz 277.0 MB
EGAF00005314471 fastq.gz 223.0 MB
EGAF00005314472 fastq.gz 276.2 MB
EGAF00005314473 fastq.gz 337.7 MB
EGAF00005314474 fastq.gz 378.9 MB
EGAF00005314475 fastq.gz 195.3 MB
EGAF00005314476 fastq.gz 242.6 MB
EGAF00005314477 fastq.gz 338.5 MB
EGAF00005314478 fastq.gz 380.1 MB
EGAF00005314479 fastq.gz 237.7 MB
EGAF00005314480 fastq.gz 265.0 MB
EGAF00005314481 fastq.gz 293.8 MB
EGAF00005314482 fastq.gz 327.3 MB
EGAF00005314483 fastq.gz 301.8 MB
EGAF00005314484 fastq.gz 335.6 MB
EGAF00005314485 fastq.gz 230.7 MB
EGAF00005314486 fastq.gz 255.9 MB
EGAF00005314487 fastq.gz 285.7 MB
EGAF00005314488 fastq.gz 341.6 MB
EGAF00005314489 fastq.gz 215.3 MB
EGAF00005314490 fastq.gz 236.4 MB
EGAF00005314491 fastq.gz 227.1 MB
EGAF00005314492 fastq.gz 250.5 MB
EGAF00005314493 fastq.gz 162.5 MB
EGAF00005314494 fastq.gz 201.5 MB
EGAF00005314495 fastq.gz 378.6 MB
EGAF00005314496 fastq.gz 476.2 MB
EGAF00005314497 fastq.gz 287.1 MB
EGAF00005314498 fastq.gz 329.4 MB
EGAF00005314499 fastq.gz 155.3 MB
EGAF00005314500 fastq.gz 190.6 MB
EGAF00005314501 fastq.gz 253.2 MB
EGAF00005314502 fastq.gz 311.1 MB
EGAF00005314503 fastq.gz 123.7 MB
EGAF00005314504 fastq.gz 152.1 MB
EGAF00005314505 fastq.gz 123.2 MB
EGAF00005314506 fastq.gz 152.9 MB
EGAF00005314507 fastq.gz 214.6 MB
EGAF00005314508 fastq.gz 225.5 MB
EGAF00005314509 fastq.gz 236.1 MB
EGAF00005314510 fastq.gz 249.4 MB
EGAF00005314511 fastq.gz 311.4 MB
EGAF00005314512 fastq.gz 353.0 MB
EGAF00005314513 fastq.gz 184.6 MB
EGAF00005314514 fastq.gz 228.3 MB
EGAF00005314515 fastq.gz 113.2 MB
EGAF00005314516 fastq.gz 128.7 MB
EGAF00005314517 fastq.gz 247.7 MB
EGAF00005314518 fastq.gz 281.9 MB
EGAF00005314519 fastq.gz 137.2 MB
EGAF00005314520 fastq.gz 156.2 MB
EGAF00005314521 fastq.gz 184.8 MB
EGAF00005314522 fastq.gz 209.3 MB
EGAF00005314523 fastq.gz 160.7 MB
EGAF00005314524 fastq.gz 182.8 MB
EGAF00005314525 fastq.gz 145.8 MB
EGAF00005314526 fastq.gz 165.4 MB
EGAF00005314527 fastq.gz 155.4 MB
EGAF00005314528 fastq.gz 165.0 MB
EGAF00005314529 fastq.gz 296.4 MB
EGAF00005314530 fastq.gz 312.5 MB
EGAF00005314531 fastq.gz 297.1 MB
EGAF00005314532 fastq.gz 330.6 MB
EGAF00005314533 fastq.gz 204.4 MB
EGAF00005314534 fastq.gz 230.8 MB
EGAF00005314535 fastq.gz 319.4 MB
EGAF00005314536 fastq.gz 361.5 MB
EGAF00005314537 fastq.gz 228.2 MB
EGAF00005314538 fastq.gz 259.6 MB
EGAF00005314539 fastq.gz 162.6 MB
EGAF00005314540 fastq.gz 180.9 MB
EGAF00005314541 fastq.gz 249.7 MB
EGAF00005314542 fastq.gz 279.0 MB
EGAF00005314543 fastq.gz 275.0 MB
EGAF00005314544 fastq.gz 334.9 MB
EGAF00005314545 fastq.gz 187.9 MB
EGAF00005314546 fastq.gz 231.1 MB
EGAF00005314547 fastq.gz 293.2 MB
EGAF00005314548 fastq.gz 308.1 MB
EGAF00005314549 fastq.gz 144.2 MB
EGAF00005314550 fastq.gz 153.0 MB
EGAF00005314551 fastq.gz 165.1 MB
EGAF00005314552 fastq.gz 183.2 MB
EGAF00005314553 fastq.gz 351.7 MB
EGAF00005314554 fastq.gz 371.7 MB
EGAF00005314555 fastq.gz 235.4 MB
EGAF00005314556 fastq.gz 259.5 MB
EGAF00005314557 fastq.gz 271.7 MB
EGAF00005314558 fastq.gz 289.8 MB
EGAF00005333220 fastq.gz 284.9 MB
EGAF00005333221 fastq.gz 348.6 MB
397 Files (273.3 GB)