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Functional dissection of inherited non-coding variation influencing multiple myeloma risk

This dataset contains ATAC sequencing of plasma cells from multiple myeloma (MM) patients. The data was used to investigate genotype-specific chromatin accessibility quantitative trait locus (caQTL) using caQTLseg (https://github.com/abhisheknrl/caQTLseg). This dataset contains 161 bam files.

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LU HDAC MM ATACseq

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom LU HDAC grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: LU HDACand the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. LU HDAC: Lund University Hematogenomics Data Access Committee, Faculty of Medicine, Lund University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify LU HDAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify LU HDAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify LU HDAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. LU HDAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than LU HDAC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Sweden and shall be subject to the exclusive jurisdiction of the Swedish courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005394 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005332499 bam 4.7 GB
EGAF00005332500 bam 4.5 GB
EGAF00005332501 bam 4.6 GB
EGAF00005332502 bam 6.2 GB
EGAF00005332503 bam 5.7 GB
EGAF00005332504 bam 3.1 GB
EGAF00005332505 bam 6.7 GB
EGAF00005332506 bam 4.4 GB
EGAF00005332507 bam 4.3 GB
EGAF00005332508 bam 6.5 GB
EGAF00005332509 bam 15.2 GB
EGAF00005332510 bam 4.9 GB
EGAF00005332511 bam 1.8 GB
EGAF00005332512 bam 7.0 GB
EGAF00005332513 bam 3.5 GB
EGAF00005332514 bam 4.1 GB
EGAF00005332515 bam 5.5 GB
EGAF00005332516 bam 4.7 GB
EGAF00005332517 bam 4.7 GB
EGAF00005332518 bam 6.0 GB
EGAF00005332519 bam 6.8 GB
EGAF00005332520 bam 7.6 GB
EGAF00005332521 bam 9.2 GB
EGAF00005332522 bam 2.7 GB
EGAF00005332523 bam 1.8 GB
EGAF00005332524 bam 3.2 GB
EGAF00005332525 bam 3.5 GB
EGAF00005332526 bam 1.6 GB
EGAF00005332527 bam 1.8 GB
EGAF00005332528 bam 1.7 GB
EGAF00005332529 bam 5.3 GB
EGAF00005332530 bam 8.9 GB
EGAF00005332531 bam 4.0 GB
EGAF00005332532 bam 2.4 GB
EGAF00005332533 bam 7.8 GB
EGAF00005332534 bam 6.8 GB
EGAF00005332535 bam 4.6 GB
EGAF00005332536 bam 6.3 GB
EGAF00005332537 bam 4.0 GB
EGAF00005332538 bam 11.2 GB
EGAF00005332539 bam 4.0 GB
EGAF00005332540 bam 3.6 GB
EGAF00005332541 bam 2.4 GB
EGAF00005332542 bam 5.9 GB
EGAF00005332543 bam 7.2 GB
EGAF00005332544 bam 5.0 GB
EGAF00005332545 bam 2.4 GB
EGAF00005332546 bam 3.7 GB
EGAF00005332547 bam 2.7 GB
EGAF00005332548 bam 5.9 GB
EGAF00005332549 bam 2.3 GB
EGAF00005332550 bam 4.8 GB
EGAF00005332551 bam 3.3 GB
EGAF00005332552 bam 9.9 GB
EGAF00005332553 bam 3.4 GB
EGAF00005332554 bam 5.3 GB
EGAF00005332555 bam 3.8 GB
EGAF00005332556 bam 4.1 GB
EGAF00005332557 bam 5.6 GB
EGAF00005332558 bam 5.6 GB
EGAF00005332559 bam 5.4 GB
EGAF00005332560 bam 12.2 GB
EGAF00005332561 bam 9.2 GB
EGAF00005332562 bam 3.4 GB
EGAF00005332563 bam 8.0 GB
EGAF00005332564 bam 6.5 GB
EGAF00005332565 bam 13.5 GB
EGAF00005332566 bam 3.4 GB
EGAF00005332567 bam 4.2 GB
EGAF00005332568 bam 7.3 GB
EGAF00005332569 bam 3.0 GB
EGAF00005332570 bam 6.3 GB
EGAF00005332571 bam 7.6 GB
EGAF00005332572 bam 5.3 GB
EGAF00005332573 bam 6.1 GB
EGAF00005332574 bam 3.1 GB
EGAF00005332575 bam 3.9 GB
EGAF00005332576 bam 5.6 GB
EGAF00005332577 bam 4.6 GB
EGAF00005332578 bam 6.5 GB
EGAF00005332579 bam 5.7 GB
EGAF00005332580 bam 13.4 GB
EGAF00005332581 bam 8.2 GB
EGAF00005332582 bam 8.5 GB
EGAF00005332583 bam 8.0 GB
EGAF00005332584 bam 11.9 GB
EGAF00005332585 bam 20.3 GB
EGAF00005332586 bam 3.2 GB
EGAF00005332587 bam 7.8 GB
EGAF00005332588 bam 3.2 GB
EGAF00005332589 bam 5.4 GB
EGAF00005332590 bam 2.6 GB
EGAF00005332591 bam 1.9 GB
EGAF00005332592 bam 4.9 GB
EGAF00005332593 bam 4.2 GB
EGAF00005332594 bam 4.2 GB
EGAF00005332595 bam 4.2 GB
EGAF00005332596 bam 4.8 GB
EGAF00005332597 bam 3.4 GB
EGAF00005332598 bam 7.6 GB
EGAF00005332599 bam 7.4 GB
EGAF00005332600 bam 4.2 GB
EGAF00005332601 bam 2.5 GB
EGAF00005332602 bam 16.8 GB
EGAF00005332603 bam 6.9 GB
EGAF00005332604 bam 6.6 GB
EGAF00005332605 bam 5.4 GB
EGAF00005332606 bam 4.8 GB
EGAF00005332607 bam 7.9 GB
EGAF00005332608 bam 3.3 GB
EGAF00005332609 bam 8.1 GB
EGAF00005332610 bam 6.7 GB
EGAF00005332611 bam 2.6 GB
EGAF00005332612 bam 11.6 GB
EGAF00005332613 bam 2.6 GB
EGAF00005332614 bam 2.4 GB
EGAF00005332615 bam 8.0 GB
EGAF00005332616 bam 8.7 GB
EGAF00005332617 bam 10.5 GB
EGAF00005332618 bam 1.5 GB
EGAF00005332619 bam 3.5 GB
EGAF00005332620 bam 2.6 GB
EGAF00005332621 bam 4.5 GB
EGAF00005332622 bam 10.6 GB
EGAF00005332623 bam 7.4 GB
EGAF00005332624 bam 7.3 GB
EGAF00005332625 bam 4.0 GB
EGAF00005332626 bam 4.1 GB
EGAF00005332627 bam 5.0 GB
EGAF00005332628 bam 1.6 GB
EGAF00005332629 bam 4.2 GB
EGAF00005332630 bam 6.4 GB
EGAF00005332631 bam 5.3 GB
EGAF00005332632 bam 5.4 GB
EGAF00005332633 bam 4.3 GB
EGAF00005332634 bam 6.5 GB
EGAF00005332635 bam 4.4 GB
EGAF00005332636 bam 3.3 GB
EGAF00005332637 bam 4.5 GB
EGAF00005332638 bam 5.0 GB
EGAF00005332639 bam 3.4 GB
EGAF00005332640 bam 4.6 GB
EGAF00005332641 bam 5.6 GB
EGAF00005332642 bam 3.6 GB
EGAF00005332643 bam 4.4 GB
EGAF00005332644 bam 3.2 GB
EGAF00005332645 bam 6.2 GB
EGAF00005332646 bam 5.1 GB
EGAF00005332647 bam 3.5 GB
EGAF00005332648 bam 6.3 GB
EGAF00005332649 bam 3.3 GB
EGAF00005332650 bam 6.4 GB
EGAF00005332651 bam 4.4 GB
EGAF00005332652 bam 6.3 GB
EGAF00005332653 bam 2.8 GB
EGAF00005332654 bam 4.0 GB
EGAF00005332655 bam 3.7 GB
EGAF00005332656 bam 5.6 GB
EGAF00005332657 bam 6.2 GB
EGAF00005332658 bam 13.8 GB
EGAF00005332659 bam 9.8 GB
161 Files (898.9 GB)