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Functional dissection of inherited non-coding variation influencing multiple myeloma risk

This dataset contains ATAC sequencing of plasma cells from multiple myeloma (MM) patients. The data was used to investigate genotype-specific chromatin accessibility quantitative trait locus (caQTL) using caQTLseg (https://github.com/abhisheknrl/caQTLseg). This dataset contains 161 bam files.

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LU HDAC MM ATACseq

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom LU HDAC grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: LU HDACand the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. LU HDAC: Lund University Hematogenomics Data Access Committee, Faculty of Medicine, Lund University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify LU HDAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify LU HDAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify LU HDAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. LU HDAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than LU HDAC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Sweden and shall be subject to the exclusive jurisdiction of the Swedish courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005332499 bam 4.7 GB
EGAF00005332500 1625139614328 4.5 GB
EGAF00005332501 bam 4.6 GB
EGAF00005332502 1625136777138 6.2 GB
EGAF00005332503 1625138242257 5.7 GB
EGAF00005332504 1625138165149 3.1 GB
EGAF00005332505 1625136777138 6.7 GB
EGAF00005332506 bam 4.4 GB
EGAF00005332507 bam 4.3 GB
EGAF00005332508 bam 6.5 GB
EGAF00005332509 1625141770065 15.2 GB
EGAF00005332510 1625139314270 4.9 GB
EGAF00005332511 1625138710246 1.8 GB
EGAF00005332512 bam 7.0 GB
EGAF00005332513 1625137924971 3.5 GB
EGAF00005332514 1625138113900 4.1 GB
EGAF00005332515 1625140683611 5.5 GB
EGAF00005332516 1625137924971 4.7 GB
EGAF00005332517 bam 4.7 GB
EGAF00005332518 1625136667088 6.0 GB
EGAF00005332519 1625138242257 6.8 GB
EGAF00005332520 1625140750817 7.6 GB
EGAF00005332521 bam 9.2 GB
EGAF00005332522 1625138710246 2.7 GB
EGAF00005332523 1625137025508 1.8 GB
EGAF00005332524 1625138941877 3.2 GB
EGAF00005332525 1625139491215 3.5 GB
EGAF00005332526 1625136970339 1.6 GB
EGAF00005332527 1625136903090 1.8 GB
EGAF00005332528 1625135478892 1.7 GB
EGAF00005332529 1625139984472 5.3 GB
EGAF00005332530 1625141252662 8.9 GB
EGAF00005332531 bam 4.0 GB
EGAF00005332532 1625137724865 2.4 GB
EGAF00005332533 bam 7.8 GB
EGAF00005332534 bam 6.8 GB
EGAF00005332535 1625136296124 4.6 GB
EGAF00005332536 1625139423746 6.3 GB
EGAF00005332537 1625139191606 4.0 GB
EGAF00005332538 1625143561555 11.2 GB
EGAF00005332539 bam 4.0 GB
EGAF00005332540 1625139123447 3.6 GB
EGAF00005332541 1625134865125 2.4 GB
EGAF00005332542 1625140505295 5.9 GB
EGAF00005332543 1625141252662 7.2 GB
EGAF00005332544 1625137724865 5.0 GB
EGAF00005332545 1625138242257 2.4 GB
EGAF00005332546 1625136005401 3.7 GB
EGAF00005332547 1625136667088 2.7 GB
EGAF00005332548 bam 5.9 GB
EGAF00005332549 1625137025508 2.3 GB
EGAF00005332550 bam 4.8 GB
EGAF00005332551 1625139423746 3.3 GB
EGAF00005332552 bam 9.9 GB
EGAF00005332553 1625135285301 3.4 GB
EGAF00005332554 1625140385730 5.3 GB
EGAF00005332555 1625140276209 3.8 GB
EGAF00005332556 bam 4.1 GB
EGAF00005332557 1625141252662 5.6 GB
EGAF00005332558 1625142004491 5.6 GB
EGAF00005332559 1625137924971 5.4 GB
EGAF00005332560 1625142970915 12.2 GB
EGAF00005332561 bam 9.2 GB
EGAF00005332562 1625136903090 3.4 GB
EGAF00005332563 1625135765553 8.0 GB
EGAF00005332564 1625138045474 6.5 GB
EGAF00005332565 1625137724865 13.5 GB
EGAF00005332566 1625134855311 3.4 GB
EGAF00005332567 1625140205789 4.2 GB
EGAF00005332568 1625135696893 7.3 GB
EGAF00005332569 1625139423746 3.0 GB
EGAF00005332570 1625142244957 6.3 GB
EGAF00005332571 1625139314270 7.6 GB
EGAF00005332572 1625141252662 5.3 GB
EGAF00005332573 1625139423746 6.1 GB
EGAF00005332574 1625139906045 3.1 GB
EGAF00005332575 1625141252662 3.9 GB
EGAF00005332576 1625137205088 5.6 GB
EGAF00005332577 bam 4.6 GB
EGAF00005332578 bam 6.5 GB
EGAF00005332579 bam 5.7 GB
EGAF00005332580 1625141770065 13.4 GB
EGAF00005332581 1625142484522 8.2 GB
EGAF00005332582 1625141252662 8.5 GB
EGAF00005332583 1625137724865 8.0 GB
EGAF00005332584 1625137095448 11.9 GB
EGAF00005332585 1625142484522 20.3 GB
EGAF00005332586 1625139123447 3.2 GB
EGAF00005332587 1625135828704 7.8 GB
EGAF00005332588 1625136005401 3.2 GB
EGAF00005332589 1625140573613 5.4 GB
EGAF00005332590 1625137205088 2.6 GB
EGAF00005332591 1625136484774 1.9 GB
EGAF00005332592 1625139191606 4.9 GB
EGAF00005332593 1625139191606 4.2 GB
EGAF00005332594 1625139123447 4.2 GB
EGAF00005332595 bam 4.2 GB
EGAF00005332596 1625134855311 4.8 GB
EGAF00005332597 1625137724865 3.4 GB
EGAF00005332598 1625139855133 7.6 GB
EGAF00005332599 1625138710246 7.4 GB
EGAF00005332600 bam 4.2 GB
EGAF00005332601 1625137724865 2.5 GB
EGAF00005332602 1625141252662 16.8 GB
EGAF00005332603 1625135696893 6.9 GB
EGAF00005332604 1625139423746 6.6 GB
EGAF00005332605 1625139314270 5.4 GB
EGAF00005332606 1625136970339 4.8 GB
EGAF00005332607 1625137724865 7.9 GB
EGAF00005332608 1625136777138 3.3 GB
EGAF00005332609 1625142244957 8.1 GB
EGAF00005332610 1625134312977 6.7 GB
EGAF00005332611 1625134493404 2.6 GB
EGAF00005332612 1625138765185 11.6 GB
EGAF00005332613 1625136903090 2.6 GB
EGAF00005332614 1625133426069 2.4 GB
EGAF00005332615 1625134924995 8.0 GB
EGAF00005332616 1625139984472 8.7 GB
EGAF00005332617 1625139614328 10.5 GB
EGAF00005332618 1625133996910 1.5 GB
EGAF00005332619 1625133426069 3.5 GB
EGAF00005332620 1625133172943 2.6 GB
EGAF00005332621 1625140750817 4.5 GB
EGAF00005332622 1625141345000 10.6 GB
EGAF00005332623 1625141644633 7.4 GB
EGAF00005332624 1625137924971 7.3 GB
EGAF00005332625 1625133996910 4.0 GB
EGAF00005332626 bam 4.1 GB
EGAF00005332627 1625140683611 5.0 GB
EGAF00005332628 1625135165247 1.6 GB
EGAF00005332629 1625139314270 4.2 GB
EGAF00005332630 1625138113900 6.4 GB
EGAF00005332631 1625134191540 5.3 GB
EGAF00005332632 1625134132368 5.4 GB
EGAF00005332633 1625137724865 4.3 GB
EGAF00005332634 bam 6.5 GB
EGAF00005332635 1625135405704 4.4 GB
EGAF00005332636 1625135765553 3.3 GB
EGAF00005332637 bam 4.5 GB
EGAF00005332638 bam 5.0 GB
EGAF00005332639 1625137095448 3.4 GB
EGAF00005332640 1625135165247 4.6 GB
EGAF00005332641 1625140683611 5.6 GB
EGAF00005332642 1625138765185 3.6 GB
EGAF00005332643 1625137724865 4.4 GB
EGAF00005332644 1625136604985 3.2 GB
EGAF00005332645 1625138286596 6.2 GB
EGAF00005332646 1625138242257 5.1 GB
EGAF00005332647 1625140205789 3.5 GB
EGAF00005332648 bam 6.3 GB
EGAF00005332649 1625135946053 3.3 GB
EGAF00005332650 1625138645230 6.4 GB
EGAF00005332651 1625138592339 4.4 GB
EGAF00005332652 bam 6.3 GB
EGAF00005332653 1625135765553 2.8 GB
EGAF00005332654 1625137924971 4.0 GB
EGAF00005332655 1625135347849 3.7 GB
EGAF00005332656 1625138286596 5.6 GB
EGAF00005332657 1625138405867 6.2 GB
EGAF00005332658 bam 13.8 GB
EGAF00005332659 1625142004491 9.8 GB
161 Files (898.9 GB)