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Paired-WGS Sequencing of Primary lymphomas of the central nervous system (PCNSL)

Paired WGS samples, 24 tumor/control pairs of primary CNS lymphoma, sequenced on HiSeq X Ten using Illumina TruSeq Nano DNA for library preparation.

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Special DAC and Policy for XD013 project, not Hipo, DTA DKFZ

Data Transfer Agreement of Human Genomic Data for Research Purposes Between: (1) “PROVIDER“ and (2) “RECIPIENT” 1 Preamble Public genetic sequence databases are a critical part of our academic biomedical research infrastructure. However, human genetic data should only be made public if we can adequately protect the privacy of research subjects. Individual genomic sequence data are sensitive patient data and any attempt to re-identify such data is forbidden under any circumstances. Our efforts to understand disease susceptibility or therapeutic opportunity require access to large genomic data sets. Therefore, the special privacy challenges posed by genomic data are addressed by PROVIDER with this Agreement. In response to the RECIPIENT's request for access to the DATA (as defined below), PROVIDER and the RECIPIENT agree as follows: 2 Definitions “DATA” shall mean all and any human genetic data obtained by the RECIPIENT from the PROVIDER including the Data Subjects’ e.g. age, sex and tumor pathology (as listed in Annex 2). For the avoidance of doubt, Data does not include samples or biological materials; “DATA SUBJECT” shall mean the person (irrespective of the state of health) to whom Data refers and who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto; “COMMERCIAL PURPOSES” shall mean the sale, lease, license, or other transfer and/or the use of the DATA to and/or by a for-profit organization. However, industrially sponsored academic research shall not be considered a use of the DATA for Commercial Purposes per se. “INTELLECTUAL PROPERTY” shall mean (i) patents, designs, trademarks and trade names (whether registered or unregistered), copyright and related rights, database rights, know-how and confidential information; (ii) all other intellectual property rights and similar or equivalent rights (whether registered or unregistered and whether registrable or unregistrable) anywhere in the world which currently exist or are recognized in the future; and (iii) applications, extensions and renewals in relation to any such rights; “RECIPIENT SCIENTIST” shall mean a researcher (or an individual conducting Research under the supervision of a researcher) that is employed by the RECIPIENT and is bound by confidentiality and non-use obligations in respect of DATA and who has accepted the terms of this Agreement in writing (however, for the avoidance of doubt, without being a party to this Agreement) and has received acknowledgement of its acceptance. For the avoidance of doubt and without having explicitly accepted the terms of this Agreement in writing, “RECIPIENT SCIENTIST” may also include any other RECIPIENT’s employees, students, visiting academics, contractors, sub-contractors or independent consultants provided that any of such latter individuals is bound by confidentiality and non- use obligations no less onerous than those binding the RECIPIENT’s employees; “RESEARCH” shall mean research that is seeking to advance the understanding and treatment of cancer and closely related diseases, and work on statistical methods that may be applied to such research; “PROJECT” shall mean a detailed description as in Annex 3; 3 Purpose of the Project The RECIPIENT agrees to use DATA only for RESEARCH as described in the purpose of the PROJECT (Annex 3). 4 Confidentiality The RECIPIENT agrees to preserve, at all times, the confidentiality of DATA pertaining to DATA SUBJECTs. In particular, the RECIPIENT undertakes not to use, or attempt to use the DATA to deliberately compromise or otherwise infringe the confidentiality of information on DATA SUBJECTs and their respective rights to privacy. 5 DATA Protection The Recipient and its RECIPIENT SCIENTIST are covered by and the RECIPIENT shall, and shall procure that its RECIPIENT SCIENTISTS shall, comply with the obligations contained in the applicable German and EU data protection laws and regulations as amended from time to time. In particular, the RECIPIENT and its RECIPIENT SCIENTISTs inter alia understands, and shall procure that its RECIPIENT SCIENTISTs understand, their duties under the German and EU legislation in relation to the handling of DATA and the rights of DATA SUBJECTs. The RECIPIENT agrees that it, and its RECIPIENT SCIENTISTs, shall not analyze or make any use of the DATA in such a way that has the potential to: a) lead to the re-identification of any DATA SUBJECT; or b) compromise the anonymity of any DATA SUBJECT in any way. The RECIPIENT shall, and it shall procure that its RECIPIENT SCIENTISTS shall, adhere to the principles of IT-Security as set forth in Annex 1 hereto. 6 Access and Governance The RECIPIENT agrees that it shall take all (commercially) reasonable security precautions to keep the DATA confidential, such precautions to be no less onerous than in the applicable German and EU data protection laws and regulations. The RECIPIENT agrees to use the DATA solely for RESEARCH in the frame of the purpose of the PROJECT. The RECIPIENT agrees that the DATA shall not be distributed or released to any other location and/or to any other person other than RECIPIENT SCIENTISTs or laboratory personnel under the RECIPIENT SCIENTISTs direct supervision. RECIPIENT does not have the right to sublicense the DATA. RECIPIENT shall inform PROVIDER about any third party requests for the DATA. PROVIDER reserves the right to request and inspect DATA security and management documentation at the RECIPIENT’s premises to ensure the adequacy of DATA protection measures with prior notice during the RECIPIENT’s ordinary working hours. DATA shall not be used for COMMERCIAL PURPOSES (e.g. diagnostic services). In case of intended commercial use of DATA, the RECIPIENT shall start negotiations in good faith leading to a fair market compensation of PROVIDER. Such a disclosure of DATA shall require a binding declaration of consent in writing from the person concerned. 7 Errors The RECIPIENT agrees to notify the PROVIDER of any errors detected in the DATA without undue delay. 8 DATA reissue The RECIPIENT accepts that PROVIDER will reissue DATA from time to time, with suitable versioning. If DATA is reissued at the request of the DATA SUBJECT and/or as the result of other ethical scrutiny, the RECIPIENT agrees to destroy all earlier versions of the DATA without undue delay once he has received such information. This shall not apply to the extent that DATA is saved in automatic back-up systems for which destruction shall follow the regular process of such back-up system, however, such DATA shall be eliminated within a period of four (4) weeks after reception of the respective request to do so or within a period of four (4) weeks upon termination in accordance with this Agreement. 9 INTELLECTUAL PROPERTY The RECIPIENT recognizes that nothing in this Agreement shall operate to transfer to the RECIPIENT or its RECIPIENT SCIENTISTs any INTELLECTUAL PROPERTY rights in or relating to the DATA, i.e. ownership of DATA remains unchanged. The RECIPIENT does not have the right to sublicense the DATA. The RECIPIENT shall inform PROVIDER about any third party requests for the DATA. In case the RECIPIENT and its RECIPIENT SCIENTISTs develops INTELLECTUAL PROPERTY based on or related to DATA as set forth in this Agreement the RECIPIENT shall become owner of such results. The RECIPIENT will inform PROVIDER about all developed INTELLECTUAL PROPERTY based on or related to DATA as set forth in this Agreement without undue delay in writing. The RECIPIENT grants PROVIDER a non-exclusive, non-transferable, royalty-free, perpetual, non-sublicensable right to use such developed INTELLECTUAL PROPERTY for internal research purposes including collaborations with any third parties excluding any COMMERCIAL PURPOSES. 10 Publications The RECIPIENT agrees to acknowledge in any RECIPIENT’s work based in whole or part on the DATA, any PROVIDER publications which encompass and from which DATA derive, the respective version of the DATA obtained, and the role of PROVIDER. The RECIPIENT is also entitled to release publications and, in doing so, agrees to acknowledge any of PROVIDER’s work based in whole or part on the DATA in its publication. The RECIPIENT will also declare in any such work that PROVIDER and its employees bear no responsibility for the further analysis or interpretation of the DATA by the RECIPIENT. 11 Violation/Termination of Agreement This Agreement shall expire automatically three (3) years after its signature by both parties. This Agreement will terminate immediately upon any material breach of a provision of this Agreement. The RECIPIENT accepts that the changing ethical framework of human genetic research may lead to: (i) alteration to the provisions of this Agreement, in which case the RECIPIENT may accept such alterations or terminate this Agreement; or (ii) the withdrawal of this Agreement in extreme circumstances. Either party shall have the right to terminate this Agreement with immediate effect upon giving written notice of termination to the other party. In the event that this Agreement is expired the RECIPIENT is required to destroy/discard any Data held, including but not limited to copies and backup copies. This shall not apply to the extent that DATA is saved in automatic back-up systems for which destruction shall follow the regular process of such back-up system, however, such DATA shall be eliminated within a period of four (4) weeks after the date of termination. Upon request of PROVIDER, the RECIPIENT will certify the destruction of the DATA. Sections 4, 5, 9 and 10 of this Agreement remain in full force and effect in case of termination. Notwithstanding the aforementioned, any provision of this Agreement related to confidentiality and/or DATA protection shall survive the expiration of this Agreement to the extent applicable statutory law provides for a deviating period of validity and effectiveness. Nothing contained in this paragraph shall restrict the right of the PROVIDER to seek injunctive relief to prevent any breach or threatened breach of this agreement, furthermore nothing contained in this paragraph shall prohibit the PROVIDER from pursuing any other remedies available to it for such breach or threatened breach, including the recovery of damages from RECIPIENT. 12 Costs The RECIPIENT acknowledges that PROVIDER shall incur costs in providing the DATA to the RECIPIENT, including but not limited to administrative costs and the cost of obtaining appropriate data storage devices. The RECIPIENT agrees to pay, at the request of PROVIDER, such reasonable costs as PROVIDER may incur in providing the DATA, within thirty (30) days after having received an invoice by PROVIDER consistent with the current provisions of the German VAT Act (Umsatzsteuergesetz - UStG) as amended from time to time. 13 Legal statement The RECIPIENT acknowledges that PROVIDER and all other parties involved in the creation, funding or protection of the DATA: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of the DATA; and b) Except to the extent prohibited by law, the RECIPIENT assumes all liability for damages which may arise from its use, storage or disposal of the DATA. PROVIDER will not be liable to the RECIPIENT for any loss, claim or demand made by the RECIPIENT, or made against the RECIPIENT by any other party, due to or arising from the use of the data by the RECIPIENT, except to the extent permitted by law when caused by the gross negligence or willful misconduct of PROVIDER. The RECIPIENT understands that all the DATA are protected by INTELLECTUAL PROPERTY rights, such that duplication or sale of all of or part of the DATA on any media is not permitted under any circumstances, except with the prior written consent of PROVIDER. In no event shall PROVIDER be liable for any use by RECIPIENT of the PROVIDER DATA or any loss, claim, damage or liability, of whatsoever kind of nature, which may arise from or in connection with this agreement or the use, handling or storage of the PROVIDER DATA or derived from PROVIDER DATA by the RECIPIENT. 14 Governing Law This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this Agreement or its formation) shall be construed, interpreted and governed by the laws of Germany excluding its conflict of law rules and shall be subject to the exclusive jurisdiction of the competent courts in Mannheim. PROVIDER complies with the requirements of the applicable German (LDSG / BDSG) and EU data protection laws and regulations with regard to the collection, storage, processing and disclosure of personal information and is committed to upholding the Act's core data protection principles.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005315877 1623253796755 38.1 GB
EGAF00005315878 1623251490458 45.4 GB
EGAF00005315879 1623252472760 40.5 GB
EGAF00005315880 1623248810467 45.6 GB
EGAF00005315881 1623245209726 39.4 GB
EGAF00005315882 1623251490458 46.9 GB
EGAF00005315883 1623248553901 40.0 GB
EGAF00005315884 1623252472760 41.7 GB
EGAF00005315885 1623244451714 38.7 GB
EGAF00005315886 1623251871244 44.8 GB
EGAF00005315887 1623254035826 39.8 GB
EGAF00005315888 1623250236845 46.7 GB
EGAF00005315889 1623253913241 39.7 GB
EGAF00005315890 1623245443152 45.5 GB
EGAF00005315891 1623245685261 38.6 GB
EGAF00005315892 1623253081012 43.6 GB
EGAF00005315893 1623247175773 44.2 GB
EGAF00005315894 1623244310935 48.3 GB
EGAF00005315895 1623246431898 37.4 GB
EGAF00005315896 1623252830995 42.7 GB
EGAF00005315897 1623250464538 36.8 GB
EGAF00005315898 1623246431898 42.1 GB
EGAF00005315899 1623249030329 38.8 GB
EGAF00005315900 1623251635569 46.0 GB
EGAF00005315901 1623250012684 38.6 GB
EGAF00005315902 1623251490458 44.8 GB
EGAF00005315903 1623253314609 38.3 GB
EGAF00005315904 1623246928301 45.9 GB
EGAF00005315905 1623254035826 35.1 GB
EGAF00005315906 1623253913241 40.5 GB
EGAF00005315907 1623252472760 38.8 GB
EGAF00005315908 1623248076937 46.9 GB
EGAF00005315909 1623247175773 40.1 GB
EGAF00005315910 1623248553902 45.2 GB
EGAF00005315911 1623245443152 38.6 GB
EGAF00005315912 1623248076937 45.7 GB
EGAF00005315913 1623251490458 38.8 GB
EGAF00005315914 1623252110068 45.2 GB
EGAF00005315915 1623247854157 38.4 GB
EGAF00005315916 1623252845240 45.5 GB
EGAF00005315917 1623247854157 38.8 GB
EGAF00005315918 1623246970505 42.8 GB
EGAF00005315919 1623250464538 38.4 GB
EGAF00005315920 1623250236845 46.5 GB
EGAF00005315921 1623252830995 38.9 GB
EGAF00005315922 1623249030329 44.6 GB
EGAF00005315923 1623248553902 38.1 GB
EGAF00005315924 1623252845240 45.1 GB
EGAF00005315925 1623247175773 39.3 GB
EGAF00005315926 1623253314609 46.9 GB
EGAF00005315927 1623250734938 38.6 GB
EGAF00005315928 1623250236845 44.5 GB
EGAF00005315929 1623253314610 35.6 GB
EGAF00005315930 1623253796755 39.9 GB
EGAF00005315931 1623247854156 39.1 GB
EGAF00005315932 1623244310935 44.4 GB
EGAF00005315933 1623249526648 38.6 GB
EGAF00005315934 1623251490458 44.5 GB
EGAF00005315935 1623246082149 37.8 GB
EGAF00005315936 1623247175773 43.6 GB
EGAF00005315937 1623254277213 37.9 GB
EGAF00005315938 1623249526648 42.7 GB
EGAF00005315939 1623248327708 39.4 GB
EGAF00005315940 1623250464538 45.3 GB
EGAF00005315941 1623254035826 37.8 GB
EGAF00005315942 1623255126308 43.7 GB
EGAF00005315943 1623245923965 39.6 GB
EGAF00005315944 1623254154019 46.4 GB
EGAF00005315945 1623246082149 37.4 GB
EGAF00005315946 1623250236845 44.4 GB
EGAF00005315947 1623252236869 38.5 GB
EGAF00005315948 1623250012684 45.9 GB
EGAF00005315949 1623249283118 39.9 GB
EGAF00005315950 1623251490458 45.4 GB
EGAF00005315951 1623249283118 37.7 GB
EGAF00005315952 1623253796755 42.2 GB
EGAF00005315953 1623245318836 38.7 GB
EGAF00005315954 1623247854156 45.9 GB
EGAF00005315955 1623246223826 38.1 GB
EGAF00005315956 1623247854157 45.1 GB
EGAF00005315957 1623247215019 39.9 GB
EGAF00005315958 1623255424765 45.7 GB
EGAF00005315959 1623247175774 39.4 GB
EGAF00005315960 1623251490458 45.9 GB
EGAF00005315961 1623251490458 39.7 GB
EGAF00005315962 1623247854157 46.4 GB
EGAF00005315963 1623246431898 39.9 GB
EGAF00005315964 1623247175775 45.4 GB
EGAF00005315965 1623253555614 38.8 GB
EGAF00005315966 1623251993787 46.3 GB
EGAF00005315967 1623249766743 38.0 GB
EGAF00005315968 1623247854157 44.4 GB
EGAF00005315969 1623250236845 37.2 GB
EGAF00005315970 1623252711303 43.2 GB
EGAF00005315971 1623244623020 34.2 GB
EGAF00005315972 1623246928301 38.5 GB
96 Files (4.0 TB)