1M-scBloodNL
Here we present the 1M-scBloodNL study, in which we performed single-cell RNA-seq on 120 individuals of the Northern Netherlands population cohort Lifelines. For each individual peripheral blood mononuclear cells (PBMCs) were sequenced in an unstimulated condition, and after 3 and 24 hour in vitro stimulation with C. albicans (CA), M. tuberculosis (MTB) and P. aeruginosa (PA), totalling approximately 1.3 million cells. scRNA-seq was conducted with the 10X Genomics 3'-end v2 (72 libraries) and v3 (33 libraries) technology. In general, each library contains PBMCs from 8 donors and 2 different stimulation-timepoint combinations. Donors were demultiplexed using a combination of SoupOrCell (https://www.nature.com/articles/s41592-020-0820-1) and genotype information to assign the correct donor to a donor-specific cell cluster.
- 988 samples
- DAC: EGAC00001002165
- Technology: Illumina NovaSeq 6000
Genotype and gene expression data are freely available. Single-cell RNA-seq data (fastq files), including a tsv file that links each cell barcode to its respective donor and stimulation-timepoint combination, has been deposited at the European Genome-phenome Archive (EGA). Genotype data is hosted from the HPC cluster of the UMCG.
The 1M-scBloodNL Data Access Committee (DAC) determines access permission. In order to request data access, please click on request data and fill in the data request form with a signed data access agreement that can be found on https://eqtlgen.org/sc/datasets/1m-scbloodnl.html We aim to provide data access within 5 working days. However, during the holiday season there might be a slight delay. For more information, contact Monique van der Wijst (m.g.p.van.der.wijst@umcg.nl).
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005316416 | 1623403315237 | 6.1 GB | ||
| EGAF00005316417 | 1623448552730 | 22.7 GB | ||
| EGAF00005316418 | 1623422165673 | 8.8 GB | ||
| EGAF00005316419 | 1623445266267 | 34.1 GB | ||
| EGAF00005316420 | 1623410332448 | 11.0 GB | ||
| EGAF00005316421 | 1623458851680 | 41.3 GB | ||
| EGAF00005316422 | 1623400849479 | 2.0 GB | ||
| EGAF00005316423 | 1623401083493 | 7.4 GB | ||
| EGAF00005316424 | 1623412251992 | 7.3 GB | ||
| EGAF00005316425 | 1623451766823 | 28.0 GB | ||
| EGAF00005316426 | 1623403065619 | 5.3 GB | ||
| EGAF00005316427 | 1623429717593 | 23.9 GB | ||
| EGAF00005316428 | 1623401083493 | 6.2 GB | ||
| EGAF00005316429 | 1623434962757 | 28.8 GB | ||
| EGAF00005316430 | 1623412731941 | 5.6 GB | ||
| EGAF00005316431 | 1623430250532 | 25.1 GB | ||
| EGAF00005316432 | 1623406367589 | 5.6 GB | ||
| EGAF00005316433 | 1623421807351 | 21.0 GB | ||
| EGAF00005316434 | 1623409737463 | 5.8 GB | ||
| EGAF00005316435 | 1623439290183 | 26.7 GB | ||
| EGAF00005316436 | 1623407929270 | 8.2 GB | ||
| EGAF00005316437 | 1623448012343 | 31.4 GB | ||
| EGAF00005316438 | 1623403429418 | 2.7 GB | ||
| EGAF00005316439 | 1623412379084 | 10.0 GB | ||
| EGAF00005316440 | 1623407929270 | 8.7 GB | ||
| EGAF00005316441 | 1623447609637 | 32.2 GB | ||
| EGAF00005316442 | 1623413995337 | 4.8 GB | ||
| EGAF00005316443 | 1623432300395 | 21.9 GB | ||
| EGAF00005316444 | 1623403551744 | 2.1 GB | ||
| EGAF00005316445 | 1623418026736 | 7.8 GB | ||
| EGAF00005316446 | 1623404750416 | 5.1 GB | ||
| EGAF00005316447 | 1623427004780 | 21.8 GB | ||
| EGAF00005316448 | 1623420784560 | 9.0 GB | ||
| EGAF00005316449 | 1623434456897 | 34.8 GB | ||
| EGAF00005316450 | 1623406034173 | 5.8 GB | ||
| EGAF00005316451 | 1623406604333 | 25.5 GB | ||
| EGAF00005316452 | 1623401805286 | 1.8 GB | ||
| EGAF00005316453 | 1623418148262 | 6.7 GB | ||
| EGAF00005316454 | 1623413363778 | 8.1 GB | ||
| EGAF00005316455 | 1623407446086 | 31.1 GB | ||
| EGAF00005316456 | 1623401205076 | 5.7 GB | ||
| EGAF00005316457 | 1623444845642 | 25.9 GB | ||
| EGAF00005316458 | 1623423421555 | 8.0 GB | ||
| EGAF00005316459 | 1623458222577 | 29.7 GB | ||
| EGAF00005316460 | 1623404272398 | 5.8 GB | ||
| EGAF00005316461 | 1623412014512 | 21.6 GB | ||
| EGAF00005316462 | 1623409977941 | 5.9 GB | ||
| EGAF00005316463 | 1623442676908 | 26.8 GB | ||
| EGAF00005316464 | 1623414598796 | 5.7 GB | ||
| EGAF00005316465 | 1623440053551 | 26.1 GB | ||
| EGAF00005316466 | 1623406137061 | 3.8 GB | ||
| EGAF00005316467 | 1623419277789 | 14.0 GB | ||
| EGAF00005316468 | 1623409132740 | 10.4 GB | ||
| EGAF00005316469 | 1623455700894 | 39.4 GB | ||
| EGAF00005316470 | 1623400730303 | 2.5 GB | ||
| EGAF00005316471 | 1623402552649 | 9.2 GB | ||
| EGAF00005316472 | 1623406137061 | 11.3 GB | ||
| EGAF00005316473 | 1623404157805 | 42.4 GB | ||
| EGAF00005316474 | 1623407465178 | 8.7 GB | ||
| EGAF00005316475 | 1623442497257 | 33.3 GB | ||
| EGAF00005316476 | 1623431398426 | 10.3 GB | ||
| EGAF00005316477 | 1623445266267 | 39.3 GB | ||
| EGAF00005316478 | 1623404396278 | 2.3 GB | ||
| EGAF00005316479 | 1623410090453 | 8.7 GB | ||
| EGAF00005316480 | 1623403801535 | 2.5 GB | ||
| EGAF00005316481 | 1623406725560 | 9.6 GB | ||
| EGAF00005316482 | 1623403188832 | 6.3 GB | ||
| EGAF00005316483 | 1623439868934 | 29.1 GB | ||
| EGAF00005316484 | 1623406034173 | 5.5 GB | ||
| EGAF00005316485 | 1623434092967 | 25.1 GB | ||
| EGAF00005316486 | 1623409737463 | 5.9 GB | ||
| EGAF00005316487 | 1623433377417 | 21.9 GB | ||
| EGAF00005316488 | 1623419527421 | 8.1 GB | ||
| EGAF00005316489 | 1623447789872 | 31.3 GB | ||
| EGAF00005316490 | 1623406367589 | 9.2 GB | ||
| EGAF00005316491 | 1623445637983 | 34.5 GB | ||
| EGAF00005316492 | 1623408405086 | 10.4 GB | ||
| EGAF00005316493 | 1623449521562 | 39.0 GB | ||
| EGAF00005316494 | 1623404030520 | 5.9 GB | ||
| EGAF00005316495 | 1623433912598 | 21.8 GB | ||
| EGAF00005316496 | 1623411895627 | 6.1 GB | ||
| EGAF00005316497 | 1623446288179 | 27.8 GB | ||
| EGAF00005316498 | 1623420431748 | 5.5 GB | ||
| EGAF00005316499 | 1623428454392 | 24.6 GB | ||
| EGAF00005316500 | 1623409737463 | 6.1 GB | ||
| EGAF00005316501 | 1623414956660 | 28.6 GB | ||
| EGAF00005316502 | 1623400864617 | 5.4 GB | ||
| EGAF00005316503 | 1623413363778 | 25.2 GB | ||
| EGAF00005316504 | 1623412379084 | 5.5 GB | ||
| EGAF00005316505 | 1623443648616 | 24.9 GB | ||
| EGAF00005316506 | 1623407325774 | 5.6 GB | ||
| EGAF00005316507 | 1623436256613 | 26.2 GB | ||
| EGAF00005316508 | 1623401330003 | 5.0 GB | ||
| EGAF00005316509 | 1623421384501 | 23.0 GB | ||
| EGAF00005316510 | 1623414837760 | 9.7 GB | ||
| EGAF00005316511 | 1623467894735 | 36.5 GB | ||
| EGAF00005316512 | 1623403551744 | 2.4 GB | ||
| EGAF00005316513 | 1623403204310 | 9.0 GB | ||
| EGAF00005316514 | 1623404396278 | 6.2 GB | ||
| EGAF00005316515 | 1623434456897 | 28.4 GB | ||
| EGAF00005316516 | 1623404396278 | 11.2 GB | ||
| EGAF00005316517 | 1623444482805 | 42.7 GB | ||
| EGAF00005316518 | 1623405008078 | 3.7 GB | ||
| EGAF00005316519 | 1623419277789 | 13.4 GB | ||
| EGAF00005316520 | 1623406034173 | 2.9 GB | ||
| EGAF00005316521 | 1623423122797 | 10.7 GB | ||
| EGAF00005316522 | 1623414234793 | 5.4 GB | ||
| EGAF00005316523 | 1623422525011 | 19.7 GB | ||
| EGAF00005316524 | 1623403915263 | 5.1 GB | ||
| EGAF00005316525 | 1623449521562 | 24.0 GB | ||
| EGAF00005316526 | 1623409737463 | 8.3 GB | ||
| EGAF00005316527 | 1623453851211 | 31.2 GB | ||
| EGAF00005316528 | 1623412379084 | 10.9 GB | ||
| EGAF00005316529 | 1623417445641 | 40.0 GB | ||
| EGAF00005316530 | 1623406485208 | 5.9 GB | ||
| EGAF00005316531 | 1623425196785 | 27.7 GB | ||
| EGAF00005316532 | 1623409737463 | 5.6 GB | ||
| EGAF00005316533 | 1623414234793 | 26.6 GB | ||
| EGAF00005316534 | 1623405170601 | 5.9 GB | ||
| EGAF00005316535 | 1623448931216 | 26.7 GB | ||
| EGAF00005316536 | 1623420431748 | 5.7 GB | ||
| EGAF00005316537 | 1623432659113 | 26.3 GB | ||
| EGAF00005316538 | 1623405277139 | 5.3 GB | ||
| EGAF00005316539 | 1623424133887 | 24.2 GB | ||
| EGAF00005316540 | 1623405064394 | 5.4 GB | ||
| EGAF00005316541 | 1623443648616 | 24.3 GB | ||
| EGAF00005316542 | 1623402439555 | 5.1 GB | ||
| EGAF00005316543 | 1623440826449 | 23.4 GB | ||
| EGAF00005316544 | 1623412014512 | 11.0 GB | ||
| EGAF00005316545 | 1623445266267 | 41.0 GB | ||
| EGAF00005316546 | 1623413363778 | 6.6 GB | ||
| EGAF00005316547 | 1623438097125 | 30.2 GB | ||
| EGAF00005316548 | 1623406970502 | 5.9 GB | ||
| EGAF00005316549 | 1623448748436 | 27.3 GB | ||
| EGAF00005316550 | 1623425937891 | 9.6 GB | ||
| EGAF00005316551 | 1623447609637 | 36.7 GB | ||
| EGAF00005316552 | 1623415921583 | 11.0 GB | ||
| EGAF00005316553 | 1623440279605 | 42.2 GB | ||
| EGAF00005316554 | 1623405170601 | 5.4 GB | ||
| EGAF00005316555 | 1623444066711 | 23.6 GB | ||
| EGAF00005316556 | 1623402724755 | 2.7 GB | ||
| EGAF00005316557 | 1623406367589 | 9.7 GB | ||
| EGAF00005316558 | 1623404272398 | 6.1 GB | ||
| EGAF00005316559 | 1623448012343 | 27.7 GB | ||
| EGAF00005316560 | 1623404272398 | 6.0 GB | ||
| EGAF00005316561 | 1623422468843 | 26.3 GB | ||
| EGAF00005316562 | 1623409009341 | 4.9 GB | ||
| EGAF00005316563 | 1623447414532 | 22.7 GB | ||
| EGAF00005316564 | 1623406034173 | 5.8 GB | ||
| EGAF00005316565 | 1623422468843 | 22.1 GB | ||
| EGAF00005316566 | 1623418866011 | 10.1 GB | ||
| EGAF00005316567 | 1623454503144 | 38.4 GB | ||
| EGAF00005316568 | 1623406034173 | 5.9 GB | ||
| EGAF00005316569 | 1623441013359 | 27.3 GB | ||
| EGAF00005316570 | 1623407446086 | 6.1 GB | ||
| EGAF00005316571 | 1623469323686 | 27.5 GB | ||
| EGAF00005316572 | 1623402439557 | 5.7 GB | ||
| EGAF00005316573 | 1623434962757 | 26.3 GB | ||
| EGAF00005316574 | 1623406034173 | 1.9 GB | ||
| EGAF00005316575 | 1623419527421 | 6.9 GB | ||
| EGAF00005316576 | 1623401805286 | 4.8 GB | ||
| EGAF00005316577 | 1623439290183 | 22.2 GB | ||
| EGAF00005316578 | 1623401450015 | 2.2 GB | ||
| EGAF00005316579 | 1623416951561 | 8.0 GB | ||
| EGAF00005316580 | 1623413632520 | 8.5 GB | ||
| EGAF00005316581 | 1623415804236 | 32.9 GB | ||
| EGAF00005316582 | 1623404157805 | 6.9 GB | ||
| EGAF00005316583 | 1623408532162 | 31.9 GB | ||
| EGAF00005316584 | 1623404396278 | 5.6 GB | ||
| EGAF00005316585 | 1623405008078 | 25.0 GB | ||
| EGAF00005316586 | 1623405008078 | 5.3 GB | ||
| EGAF00005316587 | 1623413363778 | 23.7 GB | ||
| EGAF00005316588 | 1623406604333 | 7.6 GB | ||
| EGAF00005316589 | 1623431935299 | 27.7 GB | ||
| EGAF00005316590 | 1623402709256 | 8.2 GB | ||
| EGAF00005316591 | 1623406034173 | 31.0 GB | ||
| EGAF00005316592 | 1623402552649 | 6.1 GB | ||
| EGAF00005316593 | 1623448198756 | 28.2 GB | ||
| EGAF00005316594 | 1623416156153 | 5.5 GB | ||
| EGAF00005316595 | 1623442497257 | 20.1 GB | ||
| EGAF00005316596 | 1623404750416 | 6.0 GB | ||
| EGAF00005316597 | 1623449711873 | 27.3 GB | ||
| EGAF00005316598 | 1623403801535 | 6.0 GB | ||
| EGAF00005316599 | 1623439290183 | 22.3 GB | ||
| EGAF00005316600 | 1623407929270 | 8.3 GB | ||
| EGAF00005316601 | 1623454503144 | 31.6 GB | ||
| EGAF00005316602 | 1623412731941 | 10.5 GB | ||
| EGAF00005316603 | 1623420784560 | 39.6 GB | ||
| EGAF00005316604 | 1623401690592 | 8.1 GB | ||
| EGAF00005316605 | 1623453049974 | 29.5 GB | ||
| EGAF00005316606 | 1623414715611 | 5.3 GB | ||
| EGAF00005316607 | 1623404750416 | 24.0 GB | ||
| EGAF00005316608 | 1623401083493 | 5.6 GB | ||
| EGAF00005316609 | 1623411895627 | 25.4 GB | ||
| EGAF00005316610 | 1623402709256 | 6.4 GB | ||
| EGAF00005316611 | 1623403315237 | 30.4 GB | ||
| EGAF00005316612 | 1623403315237 | 5.8 GB | ||
| EGAF00005316613 | 1623437158288 | 21.7 GB | ||
| EGAF00005316614 | 1623407465178 | 8.0 GB | ||
| EGAF00005316615 | 1623453049974 | 31.0 GB | ||
| EGAF00005316616 | 1623409737463 | 6.1 GB | ||
| EGAF00005316617 | 1623428094527 | 22.5 GB | ||
| EGAF00005316618 | 1623406034173 | 7.6 GB | ||
| EGAF00005316619 | 1623438097125 | 28.2 GB | ||
| EGAF00005316620 | 1623405517621 | 5.8 GB | ||
| EGAF00005316621 | 1623435005531 | 21.6 GB | ||
| EGAF00005316622 | 1623402439555 | 10.7 GB | ||
| EGAF00005316623 | 1623438097125 | 40.3 GB | ||
| EGAF00005316624 | 1623406034173 | 8.4 GB | ||
| EGAF00005316625 | 1623449521562 | 32.5 GB | ||
| EGAF00005316626 | 1623408643829 | 7.5 GB | ||
| EGAF00005316627 | 1623430429825 | 28.7 GB | ||
| EGAF00005316628 | 1623404883749 | 9.4 GB | ||
| EGAF00005316629 | 1623412379084 | 35.6 GB | ||
| EGAF00005316630 | 1623426645813 | 10.6 GB | ||
| EGAF00005316631 | 1623418319933 | 40.8 GB | ||
| EGAF00005316632 | 1623401205076 | 9.4 GB | ||
| EGAF00005316633 | 1623424133887 | 35.7 GB | ||
| EGAF00005316634 | 1623405517621 | 5.7 GB | ||
| EGAF00005316635 | 1623425047521 | 26.0 GB | ||
| EGAF00005316636 | 1623402439557 | 7.7 GB | ||
| EGAF00005316637 | 1623451992858 | 29.5 GB | ||
| EGAF00005316638 | 1623413879443 | 4.8 GB | ||
| EGAF00005316639 | 1623404030520 | 22.0 GB | ||
| EGAF00005316640 | 1623410811963 | 6.9 GB | ||
| EGAF00005316641 | 1623439499707 | 32.6 GB | ||
| EGAF00005316642 | 1623403065619 | 11.6 GB | ||
| EGAF00005316643 | 1623444066711 | 43.6 GB | ||
| EGAF00005316644 | 1623402951513 | 6.0 GB | ||
| EGAF00005316645 | 1623442497257 | 27.4 GB | ||
| EGAF00005316646 | 1623405517621 | 5.5 GB | ||
| EGAF00005316647 | 1623406725560 | 25.2 GB | ||
| EGAF00005316648 | 1623406970502 | 10.3 GB | ||
| EGAF00005316649 | 1623447414532 | 39.1 GB | ||
| EGAF00005316650 | 1623407325774 | 5.7 GB | ||
| EGAF00005316651 | 1623405008078 | 26.5 GB | ||
| EGAF00005316652 | 1623404750416 | 5.9 GB | ||
| EGAF00005316653 | 1623402439558 | 27.7 GB | ||
| EGAF00005316654 | 1623412251992 | 10.7 GB | ||
| EGAF00005316655 | 1623455468536 | 40.8 GB | ||
| EGAF00005316656 | 1623413995337 | 5.4 GB | ||
| EGAF00005316657 | 1623439290183 | 19.8 GB | ||
| EGAF00005316658 | 1623401933553 | 2.8 GB | ||
| EGAF00005316659 | 1623418026736 | 10.3 GB | ||
| EGAF00005316660 | 1623403188832 | 5.5 GB | ||
| EGAF00005316661 | 1623439868934 | 25.3 GB | ||
| EGAF00005316662 | 1623408643829 | 5.5 GB | ||
| EGAF00005316663 | 1623444303868 | 25.0 GB | ||
| EGAF00005316664 | 1623414474077 | 6.1 GB | ||
| EGAF00005316665 | 1623427195439 | 27.7 GB | ||
| EGAF00005316666 | 1623400974662 | 6.2 GB | ||
| EGAF00005316667 | 1623439290183 | 28.3 GB | ||
| EGAF00005316668 | 1623403429418 | 5.9 GB | ||
| EGAF00005316669 | 1623413480828 | 27.1 GB | ||
| EGAF00005316670 | 1623415432765 | 6.0 GB | ||
| EGAF00005316671 | 1623431935299 | 27.5 GB | ||
| EGAF00005316672 | 1623406034173 | 5.8 GB | ||
| EGAF00005316673 | 1623426283790 | 26.0 GB | ||
| EGAF00005316674 | 1623404633593 | 5.4 GB | ||
| EGAF00005316675 | 1623417109109 | 24.7 GB | ||
| EGAF00005316676 | 1623410697908 | 8.3 GB | ||
| EGAF00005316677 | 1623440053551 | 31.9 GB | ||
| EGAF00005316678 | 1623404272398 | 5.4 GB | ||
| EGAF00005316679 | 1623409737463 | 24.5 GB | ||
| EGAF00005316680 | 1623401450015 | 5.8 GB | ||
| EGAF00005316681 | 1623427719026 | 27.7 GB | ||
| EGAF00005316682 | 1623411290441 | 5.5 GB | ||
| EGAF00005316683 | 1623408288381 | 25.4 GB | ||
| EGAF00005316684 | 1623405008078 | 5.5 GB | ||
| EGAF00005316685 | 1623404396278 | 20.2 GB | ||
| EGAF00005316686 | 1623406137061 | 2.7 GB | ||
| EGAF00005316687 | 1623413363778 | 10.2 GB | ||
| EGAF00005316688 | 1623405008078 | 6.0 GB | ||
| EGAF00005316689 | 1623435717077 | 27.1 GB | ||
| EGAF00005316690 | 1623403429418 | 5.8 GB | ||
| EGAF00005316691 | 1623436619588 | 26.4 GB | ||
| EGAF00005316692 | 1623400374314 | 5.4 GB | ||
| EGAF00005316693 | 1623422649141 | 25.2 GB | ||
| EGAF00005316694 | 1623409024241 | 5.5 GB | ||
| EGAF00005316695 | 1623426645813 | 25.7 GB | ||
| EGAF00005316696 | 1623413363778 | 8.2 GB | ||
| EGAF00005316697 | 1623441245635 | 31.7 GB | ||
| EGAF00005316698 | 1623402552649 | 5.0 GB | ||
| EGAF00005316699 | 1623441013359 | 18.3 GB | ||
| EGAF00005316700 | 1623402439558 | 5.5 GB | ||
| EGAF00005316701 | 1623446691821 | 25.4 GB | ||
| EGAF00005316702 | 1623414598796 | 5.5 GB | ||
| EGAF00005316703 | 1623420726197 | 26.0 GB | ||
| EGAF00005316704 | 1623415432765 | 6.2 GB | ||
| EGAF00005316705 | 1623412379084 | 28.2 GB | ||
| EGAF00005316706 | 1623415795459 | 5.7 GB | ||
| EGAF00005316707 | 1623425196785 | 25.5 GB | ||
| EGAF00005316708 | 1623411064210 | 8.6 GB | ||
| EGAF00005316709 | 1623448931216 | 33.1 GB | ||
| EGAF00005316710 | 1623409737463 | 9.7 GB | ||
| EGAF00005316711 | 1623423421555 | 35.6 GB | ||
| EGAF00005316712 | 1623399299395 | 8.6 kB | ||
| 297 Files (4.9 TB) | ||||