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WGS of IP-DLBCLs

This data set includes bam files of WGS of 36 paired lymphomas in immune-privileged sites and normal controls.

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Data access policy of whole-genome sequencing of DLBCL in immune-privileged sites.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Department of Pathology and Tumor Biology, Kyoto University Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Department of Pathology and Tumor Biology, Kyoto University and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Department of Pathology and Tumor Biology, Kyoto University Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Department of Pathology and Tumor Biology, Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005367 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005314597 bam 53.8 GB
EGAF00005314598 bam 123.7 GB
EGAF00005314599 bam 87.1 GB
EGAF00005314600 bam 116.6 GB
EGAF00005314601 bam 73.6 GB
EGAF00005314602 bam 50.5 GB
EGAF00005314603 bam 61.9 GB
EGAF00005314604 bam 149.0 GB
EGAF00005314605 bam 48.9 GB
EGAF00005314606 bam 85.6 GB
EGAF00005314607 bam 70.6 GB
EGAF00005314608 bam 47.2 GB
EGAF00005314609 bam 120.6 GB
EGAF00005314610 bam 89.5 GB
EGAF00005314611 bam 69.7 GB
EGAF00005314612 bam 55.4 GB
EGAF00005314613 bam 67.6 GB
EGAF00005314614 bam 75.5 GB
EGAF00005314615 bam 79.0 GB
EGAF00005314616 bam 107.6 GB
EGAF00005314617 bam 49.4 GB
EGAF00005314618 bam 75.0 GB
EGAF00005314619 bam 60.3 GB
EGAF00005314620 bam 160.9 GB
EGAF00005314621 bam 49.6 GB
EGAF00005314622 bam 88.9 GB
EGAF00005314623 bam 59.6 GB
EGAF00005314624 bam 83.0 GB
EGAF00005314625 bam 56.3 GB
EGAF00005314626 bam 73.5 GB
EGAF00005314627 bam 53.7 GB
EGAF00005314628 bam 79.0 GB
EGAF00005314629 bam 54.8 GB
EGAF00005314630 bam 75.9 GB
EGAF00005314631 bam 58.1 GB
EGAF00005314632 bam 82.0 GB
EGAF00005314633 bam 55.0 GB
EGAF00005314634 bam 53.6 GB
EGAF00005314635 bam 69.6 GB
EGAF00005314636 bam 77.6 GB
EGAF00005314637 bam 68.5 GB
EGAF00005314638 bam 55.0 GB
EGAF00005314639 bam 69.3 GB
EGAF00005314640 bam 84.7 GB
EGAF00005314641 bam 115.7 GB
EGAF00005314642 bam 78.8 GB
EGAF00005314643 bam 96.9 GB
EGAF00005314644 bam 92.9 GB
EGAF00005314645 bam 115.3 GB
EGAF00005314646 bam 48.3 GB
EGAF00005314647 bam 74.3 GB
EGAF00005314648 bam 69.2 GB
EGAF00005314649 bam 74.9 GB
EGAF00005314650 bam 52.8 GB
EGAF00005314651 bam 58.8 GB
EGAF00005314652 bam 154.7 GB
EGAF00005314653 bam 60.1 GB
EGAF00005314654 bam 82.2 GB
EGAF00005314655 bam 92.8 GB
EGAF00005314656 bam 74.3 GB
EGAF00005314657 bam 85.9 GB
EGAF00005314658 bam 55.7 GB
EGAF00005314659 bam 87.8 GB
EGAF00005314660 bam 101.0 GB
EGAF00005314661 bam 92.3 GB
EGAF00005314662 bam 71.4 GB
EGAF00005314663 bam 76.1 GB
EGAF00005314664 bam 92.1 GB
EGAF00005314665 bam 63.6 GB
EGAF00005314666 bam 149.8 GB
EGAF00005314667 bam 75.0 GB
EGAF00005314668 bam 52.9 GB
72 Files (5.7 TB)