Low coverage WGS of plasma cfDNA

This dataset includes FASTQ files of low coverage whole genome sequencing of cell free DNA from plasma samples. The samples include 271 plasma samples of patients with an adnexal mass and 125 plasma samples of healthy individuals.

396 samples
DAC: EGAC00001002157
Technology: Illumina HiSeq 2500

Access Policy1 Study Files

Metadata

Request Access

VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation &amp;amp;amp;amp; Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001005361	Nucleosome footprinting in plasma cell-free DNA for diagnosis of ovarian cancer	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00005310362	1622810432505	384.3 MB
EGAF00005310363	1622810195256	343.5 MB
EGAF00005310364	1622810696637	912.5 MB
EGAF00005310365	1622810696637	513.3 MB
EGAF00005310366	1622810330094	383.3 MB
EGAF00005310367	1622810330094	370.8 MB
EGAF00005310368	1622810330094	331.4 MB
EGAF00005310369	1622820294584	164.6 MB
EGAF00005310370	1622811033866	604.8 MB
EGAF00005310371	1622810330094	384.2 MB
EGAF00005310372	1622810557250	207.0 MB
EGAF00005310373	1622810557249	656.2 MB
EGAF00005310374	1622810065747	184.4 MB
EGAF00005310375	1622810432505	369.9 MB
EGAF00005310376	1622810330094	367.9 MB
EGAF00005310377	1622810824156	745.9 MB
EGAF00005310378	1622810432505	438.8 MB
EGAF00005310379	1622810195256	179.4 MB
EGAF00005310380	1622810330094	330.8 MB
EGAF00005310381	1622810800418	600.6 MB
EGAF00005310382	1622810432505	311.5 MB
EGAF00005310383	1622810696637	436.2 MB
EGAF00005310384	1622810696637	486.6 MB
EGAF00005310385	1622810195256	343.5 MB
EGAF00005310386	1622810557249	195.2 MB
EGAF00005310387	1622810824156	1.5 GB
EGAF00005310388	1622810696637	863.9 MB
EGAF00005310389	1622810696637	475.8 MB
EGAF00005310390	1622810432505	461.3 MB
EGAF00005310391	1622810195258	267.0 MB
EGAF00005310392	1622810800418	923.5 MB
EGAF00005310393	1622811033866	561.8 MB
EGAF00005310394	1622810195256	296.4 MB
EGAF00005310395	1622810330094	325.5 MB
EGAF00005310396	1622810557249	424.0 MB
EGAF00005310397	1622810195258	180.9 MB
EGAF00005310398	1622810557249	272.4 MB
EGAF00005310399	1622810800418	1.2 GB
EGAF00005310400	1622810557249	468.8 MB
EGAF00005310401	1622810224328	288.4 MB
EGAF00005310402	1622810330094	225.4 MB
EGAF00005310403	1622810432505	500.2 MB
EGAF00005310404	1622810330094	379.6 MB
EGAF00005310405	1622810557249	592.6 MB
EGAF00005310406	1622810557249	512.7 MB
EGAF00005310407	1622810800418	497.4 MB
EGAF00005310408	1622810330094	300.8 MB
EGAF00005310409	1622810939890	735.3 MB
EGAF00005310410	1622811652481	1.1 GB
EGAF00005310411	1622810065747	184.1 MB
EGAF00005310412	1622810330094	381.2 MB
EGAF00005310413	1622810432505	550.3 MB
EGAF00005310414	1622810432505	533.9 MB
EGAF00005310415	1622810557249	621.4 MB
EGAF00005310416	1622810432505	467.8 MB
EGAF00005310417	1622810330094	293.5 MB
EGAF00005310418	1622811033866	2.6 GB
EGAF00005310419	1622810330094	434.1 MB
EGAF00005310420	1622810432505	423.2 MB
EGAF00005310421	1622810939890	656.0 MB
EGAF00005310422	1622810224328	369.5 MB
EGAF00005310423	1622810330094	371.4 MB
EGAF00005310424	1622810330094	359.9 MB
EGAF00005310425	1622810195258	202.1 MB
EGAF00005310426	1622810800418	199.0 MB
EGAF00005310427	1622810224328	364.9 MB
EGAF00005310428	1622810557249	445.6 MB
EGAF00005310429	1622810696637	506.2 MB
EGAF00005310430	1622810065747	211.3 MB
EGAF00005310431	1622810330094	308.1 MB
EGAF00005310432	1622810195259	254.1 MB
EGAF00005310433	1622810065747	213.4 MB
EGAF00005310434	1622810330094	361.4 MB
EGAF00005310435	1622810330094	171.7 MB
EGAF00005310436	1622809949719	260.2 MB
EGAF00005310437	1622810696637	478.5 MB
EGAF00005310438	1622810330094	233.5 MB
EGAF00005310439	1622810432505	539.3 MB
EGAF00005310440	1622810330094	302.5 MB
EGAF00005310441	1622810432505	364.1 MB
EGAF00005310442	1622810065747	172.9 MB
EGAF00005310443	1622810330094	452.0 MB
EGAF00005310444	1622810557249	402.2 MB
EGAF00005310445	1622810432505	448.5 MB
EGAF00005310446	1622810696637	526.1 MB
EGAF00005310447	1622810432505	388.8 MB
EGAF00005310448	1622810195258	327.9 MB
EGAF00005310449	1622810195259	215.3 MB
EGAF00005310450	1622810065747	235.4 MB
EGAF00005310451	1622810065747	533.4 MB
EGAF00005310452	1622810195259	306.8 MB
EGAF00005310453	1622810432505	427.0 MB
EGAF00005310454	1622810800418	644.7 MB
EGAF00005310455	1622813799278	5.6 GB
EGAF00005310456	1622809823420	590.8 MB
EGAF00005310457	1622809949719	266.4 MB
EGAF00005310458	1622810432505	506.1 MB
EGAF00005310459	1622809949719	321.0 MB
EGAF00005310460	1622810557249	628.9 MB
EGAF00005310461	1622810195259	315.4 MB
EGAF00005310462	1622810557250	437.1 MB
EGAF00005310463	1622810195259	334.5 MB
EGAF00005310464	1622810195259	234.1 MB
EGAF00005310465	1622810696637	520.4 MB
EGAF00005310466	1622810195258	324.4 MB
EGAF00005310467	1622810195258	357.2 MB
EGAF00005310468	1622810330094	226.0 MB
EGAF00005310469	1622809823420	235.9 MB
EGAF00005310470	1622809949719	338.9 MB
EGAF00005310471	1622809949719	266.8 MB
EGAF00005310472	1622810696637	1.4 GB
EGAF00005310473	1622812448685	3.1 GB
EGAF00005310474	1622810330094	363.5 MB
EGAF00005310475	1622810195256	218.8 MB
EGAF00005310476	1622810696637	542.1 MB
EGAF00005310477	1622809949719	849.2 MB
EGAF00005310478	1622810065747	281.2 MB
EGAF00005310479	1622810330094	424.6 MB
EGAF00005310480	1622810557250	584.1 MB
EGAF00005310481	1622810195256	598.2 MB
EGAF00005310482	1622809949719	349.6 MB
EGAF00005310483	1622809949719	281.9 MB
EGAF00005310484	1622810696637	468.6 MB
EGAF00005310485	1622810696637	455.7 MB
EGAF00005310486	1622810432505	378.1 MB
EGAF00005310487	1622810330094	382.1 MB
EGAF00005310488	1622820294584	340.9 MB
EGAF00005310489	1622809949719	962.0 MB
EGAF00005310490	1622809823420	521.7 MB
EGAF00005310491	1622810696637	1.3 GB
EGAF00005310492	1622811063781	704.4 MB
EGAF00005310493	1622810065747	255.3 MB
EGAF00005310494	1622810557250	754.1 MB
EGAF00005310495	1622810432505	549.5 MB
EGAF00005310496	1622810939890	1.4 GB
EGAF00005310497	1622811390519	1.6 GB
EGAF00005310498	1622810432505	544.9 MB
EGAF00005310499	1622810195256	340.8 MB
EGAF00005310500	1622809725054	430.5 MB
EGAF00005310501	1622810800418	966.1 MB
EGAF00005310502	1622810195256	178.6 MB
EGAF00005310503	1622809823420	240.3 MB
EGAF00005310504	1622809725054	589.4 MB
EGAF00005310505	1622809823420	486.6 MB
EGAF00005310506	1622809625481	410.9 MB
EGAF00005310507	1622809625481	368.4 MB
EGAF00005310508	1622809823420	186.0 MB
EGAF00005310509	1622809725054	383.7 MB
EGAF00005310510	1622810065747	216.5 MB
EGAF00005310511	1622809478549	535.4 MB
EGAF00005310512	1622810330094	393.3 MB
EGAF00005310513	1622809585766	392.7 MB
EGAF00005310514	1622809949719	408.5 MB
EGAF00005310515	1622810432505	448.9 MB
EGAF00005310516	1622810432505	474.1 MB
EGAF00005310517	1622809625481	223.0 MB
EGAF00005310518	1622810696637	882.1 MB
EGAF00005310519	1622809823420	420.0 MB
EGAF00005310520	1622809585766	221.6 MB
EGAF00005310521	1622809625481	355.5 MB
EGAF00005310522	1622809350985	434.3 MB
EGAF00005310523	1622809264053	378.8 MB
EGAF00005310524	1622810195256	228.9 MB
EGAF00005310525	1622809823420	335.9 MB
EGAF00005310526	1622810330094	489.8 MB
EGAF00005310527	1622809226452	263.0 MB
EGAF00005310528	1622811063781	635.9 MB
EGAF00005310529	1622810432505	476.4 MB
EGAF00005310530	1622812618629	5.9 GB
EGAF00005310531	1622809264053	191.6 MB
EGAF00005310532	1622810195256	611.9 MB
EGAF00005310533	1622809725054	358.9 MB
EGAF00005310534	1622809585766	218.4 MB
EGAF00005310535	1622809823420	220.1 MB
EGAF00005310536	1622811033866	1.6 GB
EGAF00005310537	1622810432505	330.3 MB
EGAF00005310538	1622810696637	878.9 MB
EGAF00005310539	1622810939890	451.6 MB
EGAF00005310540	1622809949719	625.5 MB
EGAF00005310541	1622809099826	170.2 MB
EGAF00005310542	1622809625481	425.4 MB
EGAF00005310543	1622809226452	279.0 MB
EGAF00005310544	1622809725054	502.4 MB
EGAF00005310545	1622810939890	733.9 MB
EGAF00005310546	1622809350985	314.6 MB
EGAF00005310547	1622810330094	345.9 MB
EGAF00005310548	1622809350985	332.0 MB
EGAF00005310549	1622812296683	2.7 GB
EGAF00005310550	1622809099826	1.2 GB
EGAF00005310551	1622810432505	453.5 MB
EGAF00005310552	1622809099827	833.4 MB
EGAF00005310553	1622809099827	357.1 MB
EGAF00005310554	1622808979717	182.5 MB
EGAF00005310555	1622809099827	403.1 MB
EGAF00005310556	1622809725054	417.5 MB
EGAF00005310557	1622809099827	198.5 MB
EGAF00005310558	1622809478549	384.1 MB
EGAF00005310559	1622809949719	380.1 MB
EGAF00005310560	1622809949719	352.0 MB
EGAF00005310561	1622809625481	498.9 MB
EGAF00005310562	1622808784314	203.4 MB
EGAF00005310563	1622808738215	179.7 MB
EGAF00005310564	1622809099827	401.1 MB
EGAF00005310565	1622808979717	264.6 MB
EGAF00005310566	1622809725054	231.6 MB
EGAF00005310567	1622810557250	793.4 MB
EGAF00005310568	1622808979717	271.6 MB
EGAF00005310569	1622808979717	412.0 MB
EGAF00005310570	1622808979717	201.5 MB
EGAF00005310571	1622809725054	230.3 MB
EGAF00005310572	1622809350985	407.4 MB
EGAF00005310573	1622809226452	477.1 MB
EGAF00005310574	1622808867291	527.6 MB
EGAF00005310575	1622808867290	157.0 MB
EGAF00005310576	1622809585766	587.3 MB
EGAF00005310577	1622809823420	281.5 MB
EGAF00005310578	1622810065747	213.4 MB
EGAF00005310579	1622809585766	358.8 MB
EGAF00005310580	1622809099826	319.5 MB
EGAF00005310581	1622810195256	340.9 MB
EGAF00005310582	1622808784314	239.9 MB
EGAF00005310583	1622810330094	439.6 MB
EGAF00005310584	1622808979717	280.2 MB
EGAF00005310585	1622808979717	265.1 MB
EGAF00005310586	1622809099827	11.1 MB
EGAF00005310587	1622809099827	75.4 MB
EGAF00005310588	1622809226452	318.6 MB
EGAF00005310589	1622808867290	516.8 MB
EGAF00005310590	1622810432505	462.1 MB
EGAF00005310591	1622809226452	511.8 MB
EGAF00005310592	1622809099827	1.3 GB
EGAF00005310593	1622809350985	597.0 MB
EGAF00005310594	1622809350985	421.0 MB
EGAF00005310595	1622809585766	285.9 MB
EGAF00005310596	1622809350985	408.8 MB
EGAF00005310597	1622810065747	352.3 MB
EGAF00005310598	1622810224328	1.3 GB
EGAF00005310599	1622810800418	648.6 MB
EGAF00005310600	1622810432505	383.6 MB
EGAF00005310601	1622810065747	306.8 MB
EGAF00005310602	1622809264053	268.8 MB
EGAF00005310603	1622808867290	441.5 MB
EGAF00005310604	1622808979717	683.9 MB
EGAF00005310605	1622808979717	253.0 MB
EGAF00005310606	1622808979717	274.2 MB
EGAF00005310607	1622809264053	320.5 MB
EGAF00005310608	1622810800418	3.6 GB
EGAF00005310609	1622810065747	632.6 MB
EGAF00005310610	1622809350985	436.6 MB
EGAF00005310611	1622810557250	683.3 MB
EGAF00005310612	1622808979717	292.9 MB
EGAF00005310613	1622810195256	342.5 MB
EGAF00005310614	1622810195256	305.9 MB
EGAF00005310615	1622809585766	817.5 MB
EGAF00005310616	1622809226452	308.8 MB
EGAF00005310617	1622809099826	154.4 MB
EGAF00005310618	1622808867290	334.9 MB
EGAF00005310619	1622808867290	181.9 MB
EGAF00005310620	1622808738215	204.1 MB
EGAF00005310621	1622810330094	400.8 MB
EGAF00005310622	1622809264053	331.2 MB
EGAF00005310623	1622808979717	415.9 MB
EGAF00005310624	1622808979717	522.7 MB
EGAF00005310625	1622809725054	520.7 MB
EGAF00005310626	1622808867290	757.6 MB
EGAF00005310627	1622810195256	284.9 MB
EGAF00005310628	1622809350985	332.7 MB
EGAF00005310629	1622810800418	599.7 MB
EGAF00005310630	1622810330094	348.2 MB
EGAF00005310631	1622810330094	345.2 MB
EGAF00005310632	1622809949719	540.8 MB
EGAF00005310633	1622810330094	327.2 MB
EGAF00005310634	1622809725054	503.6 MB
EGAF00005310635	1622809823420	91.3 MB
EGAF00005310636	1622809264053	279.9 MB
EGAF00005310637	1622809725054	210.1 MB
EGAF00005310638	1622810330094	321.0 MB
EGAF00005310639	1622809949719	241.8 MB
EGAF00005310640	1622810195256	338.6 MB
EGAF00005310641	1622809478549	215.5 MB
EGAF00005310642	1622809725054	420.2 MB
EGAF00005310643	1622810432505	467.3 MB
EGAF00005310644	1622810824156	731.5 MB
EGAF00005310645	1622809585766	403.5 MB
EGAF00005310646	1622810557250	544.1 MB
EGAF00005310647	1622808784314	247.4 MB
EGAF00005310648	1622810330094	433.2 MB
EGAF00005310649	1622809725054	183.6 MB
EGAF00005310650	1622808979717	394.5 MB
EGAF00005310651	1622809823420	422.5 MB
EGAF00005310652	1622810800418	934.9 MB
EGAF00005310653	1622810065747	324.6 MB
EGAF00005310654	1622808979717	381.5 MB
EGAF00005310655	1622809099827	390.5 MB
EGAF00005310656	1622809099827	547.3 MB
EGAF00005310657	1622810557249	848.8 MB
EGAF00005310658	1622808979717	363.2 MB
EGAF00005310659	1622809625481	174.7 MB
EGAF00005310660	1622809099827	290.6 MB
EGAF00005310661	1622809226452	401.7 MB
EGAF00005310662	1622810557249	818.4 MB
EGAF00005310663	1622808979717	115.2 MB
EGAF00005310664	1622809725054	494.0 MB
EGAF00005310665	1622810330094	187.0 MB
EGAF00005310666	1622810330094	299.1 MB
EGAF00005310667	1622809350985	177.4 MB
EGAF00005310668	1622809478549	439.7 MB
EGAF00005310669	1622809350985	184.6 MB
EGAF00005310670	1622809226452	366.7 MB
EGAF00005310671	1622810557249	417.6 MB
EGAF00005310672	1622809823420	382.8 MB
EGAF00005310673	1622810330094	441.3 MB
EGAF00005310674	1622809823420	264.7 MB
EGAF00005310675	1622810432505	436.1 MB
EGAF00005310676	1622809585766	387.6 MB
EGAF00005310677	1622810696637	500.6 MB
EGAF00005310678	1622810065747	327.2 MB
EGAF00005310679	1622809725054	345.3 MB
EGAF00005310680	1622809226452	663.0 MB
EGAF00005310681	1622809725054	397.0 MB
EGAF00005310682	1622809949719	309.7 MB
EGAF00005310683	1622810195256	275.1 MB
EGAF00005310684	1622809099827	422.7 MB
EGAF00005310685	1622809350986	155.1 MB
EGAF00005310686	1622810195256	201.9 MB
EGAF00005310687	1622810432505	416.2 MB
EGAF00005310688	1622810065747	427.5 MB
EGAF00005310689	1622809725054	437.2 MB
EGAF00005310690	1622809725054	235.2 MB
EGAF00005310691	1622809949719	435.8 MB
EGAF00005310692	1622809226452	275.8 MB
EGAF00005310693	1622810432505	449.7 MB
EGAF00005310694	1622809823420	224.8 MB
EGAF00005310695	1622810065747	437.7 MB
EGAF00005310696	1622809949719	350.0 MB
EGAF00005310697	1645638240781	344.0 MB
EGAF00005310698	1622809725054	977.8 MB
EGAF00005310699	1622809725054	266.1 MB
EGAF00005310700	1622809949719	489.4 MB
EGAF00005310701	1622809725054	302.9 MB
EGAF00005310702	1622809949719	219.6 MB
EGAF00005310703	1622810065747	334.1 MB
EGAF00005310704	1622809725054	225.8 MB
EGAF00005310705	1622810557249	765.8 MB
EGAF00005310706	1622810696637	387.2 MB
EGAF00005310707	1622810065747	539.8 MB
EGAF00005310708	1622809949719	329.6 MB
EGAF00005310709	1622810065747	527.7 MB
EGAF00005310710	1622810195256	168.3 MB
EGAF00005310711	1622810696637	1.1 GB
EGAF00005310712	1622810330094	387.1 MB
EGAF00005310713	1622810065747	192.1 MB
EGAF00005310714	1622809949719	416.7 MB
EGAF00005310715	1622810065747	181.7 MB
EGAF00005310716	1622810696637	473.5 MB
EGAF00005310717	1622811390519	517.7 MB
EGAF00005310718	1622811268519	1.4 GB
EGAF00005310719	1622810696637	878.7 MB
EGAF00005310720	1622810696637	496.3 MB
EGAF00005310721	1622810696637	527.2 MB
EGAF00005310722	1622810557249	586.8 MB
EGAF00005310723	1622810432505	422.8 MB
EGAF00005310724	1622810195256	338.8 MB
EGAF00005310725	1622810195256	293.0 MB
EGAF00005310726	1622810696637	443.3 MB
EGAF00005310727	1622810330094	401.6 MB
EGAF00005310728	1622810065747	162.9 MB
EGAF00005310729	1622810195256	267.9 MB
EGAF00005310730	1622810195256	235.9 MB
EGAF00005310731	1622810195256	174.1 MB
EGAF00005310732	1622810195256	286.9 MB
EGAF00005310733	1622810939890	305.7 MB
EGAF00005310734	1622810696637	420.6 MB
EGAF00005310735	1622810696637	521.1 MB
EGAF00005310736	1622812956320	4.9 GB
EGAF00005310737	1622810195256	304.8 MB
EGAF00005310738	1622810330094	249.8 MB
EGAF00005310739	1622810939890	477.0 MB
EGAF00005310740	1622810195256	333.4 MB
EGAF00005310741	1622810800418	321.6 MB
EGAF00005310742	1622810432505	388.2 MB
EGAF00005310743	1622810195256	219.7 MB
EGAF00005310744	1622810432505	297.5 MB
EGAF00005310745	1622810696637	1.1 GB
EGAF00005310746	1622810195256	197.0 MB
EGAF00005310747	1622810330094	384.5 MB
EGAF00005310748	1622810696637	478.6 MB
EGAF00005310749	1622810557249	227.2 MB
EGAF00005310750	1622810195256	286.8 MB
EGAF00005310751	1622810557249	771.3 MB
EGAF00005310752	1622810432505	401.8 MB
EGAF00005310753	1622810065747	223.9 MB
EGAF00005310754	1622810330094	385.8 MB
EGAF00005310755	1622810696637	852.8 MB
EGAF00005310756	1622810432505	532.2 MB
EGAF00005310757	1622810195256	339.2 MB
396 Files (195.9 GB)