Need Help?

CD19 CAR-T cells from non-Hodgkin's lymphoma patients

The samples across 17 NHL patient samples with the CD19 CAR-T treatments are sequenced in 10x genomics. Refer to the manuscript supplementary tables and "https://github.com/hwanglab/hwanglab_2021_tigitCarT" for the sequencing sample sheets, the patient clinical information, processed data, and source codes.

Request Access

Sequential single-cell transcriptional and protein marker profiling reveals TIGIT as a marker of CD19 CAR-T cell dysfunction in patients with non-Hodgkin’s lymphoma

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005309461 1622644508754 2.4 GB
EGAF00005309462 1622646540748 5.5 GB
EGAF00005309463 1622643283463 88.3 MB
EGAF00005309464 1622643168700 166.9 MB
EGAF00005309465 1622644906634 2.7 GB
EGAF00005309466 1622646654761 6.1 GB
EGAF00005309467 1622643654211 1.3 GB
EGAF00005309468 1622643775847 2.9 GB
EGAF00005309469 1622650801802 18.5 GB
EGAF00005309470 1622648683251 17.8 GB
EGAF00005309471 1622650408598 17.8 GB
EGAF00005309472 1622651524977 17.2 GB
EGAF00005309473 1622645757597 14.1 GB
EGAF00005309474 1622647130745 12.0 GB
EGAF00005309475 1622651988783 17.6 GB
EGAF00005309476 1622648447199 14.9 GB
EGAF00005309477 1622651639509 17.8 GB
EGAF00005309478 1622650282122 17.4 GB
EGAF00005309479 1622644255932 289.3 MB
EGAF00005309480 1622643522920 443.4 MB
EGAF00005309481 1622648575859 18.6 GB
EGAF00005309482 1622651639509 18.1 GB
EGAF00005309483 1622644255932 186.9 MB
EGAF00005309484 1622643545718 341.3 MB
EGAF00005309485 1622643283463 95.0 MB
EGAF00005309486 1622643522921 178.6 MB
EGAF00005309487 1622643283463 504.9 MB
EGAF00005309488 1622643775847 865.9 MB
EGAF00005309489 1622646540748 15.6 GB
EGAF00005309490 1622651639509 15.6 GB
EGAF00005309491 1622647130746 18.1 GB
EGAF00005309492 1622650408598 17.5 GB
EGAF00005309493 1622643283463 68.3 MB
EGAF00005309494 1622643905716 123.0 MB
EGAF00005309495 1622644486930 417.5 MB
EGAF00005309496 1622643654211 949.2 MB
EGAF00005309497 1622644634748 2.3 GB
EGAF00005309498 1622647369168 5.4 GB
EGAF00005309499 1622644255932 2.0 GB
EGAF00005309500 1622644783068 4.5 GB
EGAF00005309501 1622650282122 24.7 GB
EGAF00005309502 1622648083401 23.9 GB
EGAF00005309503 1622650559437 17.9 GB
EGAF00005309504 1622647966255 17.3 GB
EGAF00005309505 1622643283463 89.6 MB
EGAF00005309506 1622643168700 159.5 MB
EGAF00005309507 1622644486930 1.7 GB
EGAF00005309508 1622646540748 4.0 GB
EGAF00005309509 1622644906634 1.7 GB
EGAF00005309510 1622646540749 4.0 GB
EGAF00005309511 1622643522921 1.5 GB
EGAF00005309512 1622646540749 3.5 GB
EGAF00005309513 1622643168700 54.6 MB
EGAF00005309514 1622643168700 98.2 MB
EGAF00005309515 1622643283463 122.6 MB
EGAF00005309516 1622643283463 223.0 MB
EGAF00005309517 1622643283464 95.1 MB
EGAF00005309518 1622643654211 176.5 MB
EGAF00005309519 1622643522921 35.4 MB
EGAF00005309520 1622643283463 38.6 MB
EGAF00005309521 1622647724143 18.4 GB
EGAF00005309522 1622648812664 17.9 GB
EGAF00005309523 1622645757597 22.3 GB
EGAF00005309524 1622650921370 21.3 GB
EGAF00005309525 1622648328091 23.9 GB
EGAF00005309526 1622651871230 22.9 GB
EGAF00005309527 1622648704963 17.3 GB
EGAF00005309528 1622651152900 16.9 GB
EGAF00005309529 1622648083401 21.0 GB
EGAF00005309530 1622648083401 20.5 GB
EGAF00005309531 1622643283463 150.3 MB
EGAF00005309532 1622643654211 277.9 MB
EGAF00005309533 1622643401568 164.1 MB
EGAF00005309534 1622643283463 307.8 MB
EGAF00005309535 1622643168700 185.4 MB
EGAF00005309536 1622643283463 339.6 MB
EGAF00005309537 1622643775847 133.8 MB
EGAF00005309538 1622643283463 249.3 MB
EGAF00005309539 1622648447199 17.4 GB
EGAF00005309540 1622652236239 17.2 GB
EGAF00005309541 1622643283463 191.1 MB
EGAF00005309542 1622643401568 423.9 MB
EGAF00005309543 1622645385749 1.3 GB
EGAF00005309544 1622645385749 3.0 GB
EGAF00005309545 1622648218968 20.3 GB
EGAF00005309546 1622652236239 19.9 GB
EGAF00005309547 1622648083401 17.3 GB
EGAF00005309548 1622646540748 16.9 GB
EGAF00005309549 1622650921370 18.4 GB
EGAF00005309550 1622644486930 17.8 GB
EGAF00005309551 1622648328091 24.0 GB
EGAF00005309552 1622649300034 22.8 GB
EGAF00005309553 1622643168701 191.8 MB
EGAF00005309554 1622643283464 432.0 MB
EGAF00005309555 1622644117961 1.6 GB
EGAF00005309556 1622645989402 3.6 GB
EGAF00005309557 1622646540749 21.9 GB
EGAF00005309558 1622646540748 20.9 GB
EGAF00005309559 1622643168700 64.3 MB
EGAF00005309560 1622643283464 115.9 MB
EGAF00005309561 1622643401568 103.1 MB
EGAF00005309562 1622643283463 186.1 MB
EGAF00005309563 1622643168700 208.4 MB
EGAF00005309564 1622643775847 382.7 MB
EGAF00005309565 1622643283463 61.6 MB
EGAF00005309566 1622643283463 113.5 MB
EGAF00005309567 1622643775847 1.8 GB
EGAF00005309568 1622644634748 3.5 GB
EGAF00005309569 1622643401568 2.6 GB
EGAF00005309570 1622644364655 6.0 GB
EGAF00005309571 1622644255932 2.6 GB
EGAF00005309572 1622643882954 5.9 GB
EGAF00005309573 1622646540748 11.7 GB
EGAF00005309574 1622647130746 21.6 GB
EGAF00005309575 1622643522921 2.6 GB
EGAF00005309576 1622645757597 6.0 GB
EGAF00005309577 1622649602407 25.2 GB
EGAF00005309578 1622647130746 22.3 GB
EGAF00005309579 1622651039999 22.3 GB
EGAF00005309580 1622650282122 19.7 GB
EGAF00005309581 1622645385749 9.9 GB
EGAF00005309582 1622646654761 8.6 GB
EGAF00005309583 1622650801802 16.4 GB
EGAF00005309584 1622646893341 15.1 GB
EGAF00005309585 1622649602407 16.3 GB
EGAF00005309586 1622645625978 15.9 GB
EGAF00005309587 1622648575859 19.0 GB
EGAF00005309588 1622647966255 17.6 GB
EGAF00005309589 1622643401568 210.5 MB
EGAF00005309590 1622643522921 390.2 MB
EGAF00005309591 1622652121100 17.5 GB
EGAF00005309592 1622647008734 17.4 GB
EGAF00005309593 1622643064765 54.6 MB
EGAF00005309594 1622643283463 100.9 MB
EGAF00005309595 1622643665136 89.7 MB
EGAF00005309596 1622643168700 162.5 MB
EGAF00005309597 1622650282123 17.5 GB
EGAF00005309598 1622646893341 17.5 GB
EGAF00005309599 1622649602407 16.2 GB
EGAF00005309600 1622646893341 15.5 GB
EGAF00005309601 1622647130745 17.3 GB
EGAF00005309602 1622649173151 16.8 GB
EGAF00005309603 1622643283463 230.1 MB
EGAF00005309604 1622643283463 422.1 MB
EGAF00005309605 1622643168700 119.7 MB
EGAF00005309606 1622643168700 224.6 MB
EGAF00005309607 1622645625978 19.1 GB
EGAF00005309608 1622651268719 16.0 GB
EGAF00005309609 1622645269268 14.5 GB
EGAF00005309610 1622645030653 12.3 GB
EGAF00005309611 1622645030653 17.0 GB
EGAF00005309612 1622647610814 16.7 GB
EGAF00005309613 1622648683251 20.3 GB
EGAF00005309614 1622646540748 19.5 GB
EGAF00005309615 1622648812664 22.3 GB
EGAF00005309616 1622650282123 21.9 GB
EGAF00005309617 1622649052275 10.9 GB
EGAF00005309618 1622645269268 10.5 GB
EGAF00005309619 1622643283463 895.0 MB
EGAF00005309620 1622643654211 1.9 GB
EGAF00005309621 1622651152900 25.4 GB
EGAF00005309622 1622651639509 22.4 GB
EGAF00005309623 1622650282123 22.3 GB
EGAF00005309624 1622650408598 20.9 GB
EGAF00005309625 1622647008734 21.1 GB
EGAF00005309626 1622652236239 19.8 GB
EGAF00005309627 1622646540748 17.3 GB
EGAF00005309628 1622647130745 16.3 GB
EGAF00005309629 1622646540749 2.4 GB
EGAF00005309630 1622646540749 5.6 GB
EGAF00005309631 1622644634748 2.2 GB
EGAF00005309632 1622644634748 5.1 GB
EGAF00005309633 1622643775847 2.5 GB
EGAF00005309634 1622644634748 5.8 GB
EGAF00005309635 1622646893341 15.2 GB
EGAF00005309636 1622650282122 37.7 GB
EGAF00005309637 1622650282122 16.0 GB
EGAF00005309638 1622647966255 15.8 GB
EGAF00005309639 1630393925321 2.8 GB
EGAF00005309640 1622645645361 5.4 GB
EGAF00005309641 1622648328091 17.4 GB
EGAF00005309642 1622650282122 17.0 GB
EGAF00005309643 1622644117961 2.2 GB
EGAF00005309644 1622647966255 5.0 GB
EGAF00005309645 1622644255932 1.6 GB
EGAF00005309646 1622644015769 3.9 GB
EGAF00005309647 1622647008734 8.5 GB
EGAF00005309648 1622648447199 6.3 GB
EGAF00005309649 1622651388157 21.1 GB
EGAF00005309650 1622647130745 19.5 GB
EGAF00005309651 1622643905716 188.0 MB
EGAF00005309652 1622643401568 354.5 MB
EGAF00005309653 1622646540749 20.2 GB
EGAF00005309654 1622650282123 18.8 GB
EGAF00005309655 1622645757597 16.3 GB
EGAF00005309656 1622645385749 15.3 GB
EGAF00005309657 1622643283463 175.8 MB
EGAF00005309658 1622644364655 317.4 MB
EGAF00005309659 1622643401568 166.7 MB
EGAF00005309660 1622643283463 315.2 MB
EGAF00005309661 1622648465246 19.1 GB
EGAF00005309662 1622650282123 18.7 GB
EGAF00005309663 1622643401568 982.4 MB
EGAF00005309664 1622643654211 2.1 GB
EGAF00005309665 1622643522921 39.4 MB
EGAF00005309666 1622643283463 86.3 MB
EGAF00005309667 1622647130745 22.0 GB
EGAF00005309668 1622648812664 21.6 GB
EGAF00005309669 1622644364655 2.3 GB
EGAF00005309670 1622644783068 5.4 GB
EGAF00005309671 1622644255932 2.2 GB
EGAF00005309672 1622645757597 5.2 GB
EGAF00005309673 1622643522921 1.7 GB
EGAF00005309674 1622645269268 4.0 GB
EGAF00005309675 1622643283463 72.8 MB
EGAF00005309676 1622643654211 137.1 MB
EGAF00005309677 1622643168700 151.0 MB
EGAF00005309678 1622643283463 283.7 MB
218 Files (2.0 TB)