Need Help?

Leiomyosarcoma Whole Genome Sequencing

DNA was extracted from fresh frozen LMS material for 29 untreated tumors (24 primary tumors, 5 metastatic 13 relapses) and 13 tumors treated with radiation (7 primaries, 6 metastatic relapses). DNA from matched blood was used as a normal reference. Whole-genome sequencing was performed using established protocols on Illumina instruments.

Request Access

Sickkids policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Shlien Lab, at The Hospital for Sick Children grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Shlien Lab, at The Hospital for Sick Children and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Hospital for Sick Children 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify EGA within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify EGA prior to any significant changes to the protocol for the Project. 14. The User Institution will notify EGA as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. EGA may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than EGA. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005307511 1622394788639 37.1 GB
EGAF00005307512 1622392204075 40.6 GB
EGAF00005307513 1622404144739 36.6 GB
EGAF00005307514 1622412599065 39.8 GB
EGAF00005307515 1622401207925 35.6 GB
EGAF00005307516 1622406844407 39.0 GB
EGAF00005307517 1622394788639 37.7 GB
EGAF00005307518 1622411224438 41.5 GB
EGAF00005307519 1622403543970 37.6 GB
EGAF00005307520 1622406484635 41.6 GB
EGAF00005307521 1622397971785 37.4 GB
EGAF00005307522 1622405764971 41.0 GB
EGAF00005307523 1622410624290 37.0 GB
EGAF00005307524 1622395323943 40.7 GB
EGAF00005307525 1622410024480 39.3 GB
EGAF00005307526 1622397971785 45.5 GB
EGAF00005307527 1622402590733 36.6 GB
EGAF00005307528 1622406543606 41.6 GB
EGAF00005307529 1622404204548 37.5 GB
EGAF00005307530 1622405502669 42.3 GB
EGAF00005307531 1622405502669 40.0 GB
EGAF00005307532 1622406124483 45.4 GB
EGAF00005307533 1622403184558 37.4 GB
EGAF00005307534 1622395624271 40.3 GB
EGAF00005307535 1622394788641 37.6 GB
EGAF00005307536 1622409724026 40.6 GB
EGAF00005307537 1622405502669 35.1 GB
EGAF00005307538 1622398023631 39.0 GB
EGAF00005307539 1622407504064 35.6 GB
EGAF00005307540 1622405502670 40.2 GB
EGAF00005307541 1622400964418 34.9 GB
EGAF00005307542 1622392624716 38.6 GB
EGAF00005307543 1622411284463 34.0 GB
EGAF00005307544 1622396824815 38.1 GB
EGAF00005307545 1622402106140 34.8 GB
EGAF00005307546 1622406904736 38.6 GB
EGAF00005307547 1622396763620 34.8 GB
EGAF00005307548 1622404503942 38.7 GB
EGAF00005307549 1622411464438 42.0 GB
EGAF00005307550 1622398204754 47.6 GB
EGAF00005307551 1622397971785 37.1 GB
EGAF00005307552 1622406484635 41.9 GB
EGAF00005307553 1622403004270 37.7 GB
EGAF00005307554 1622405824070 42.9 GB
EGAF00005307555 1622404503942 36.7 GB
EGAF00005307556 1622411524771 41.8 GB
EGAF00005307557 1622404324671 38.3 GB
EGAF00005307558 1622406004038 43.9 GB
EGAF00005307559 1622405884024 37.2 GB
EGAF00005307560 1622398324448 41.9 GB
EGAF00005307561 1622403963573 35.8 GB
EGAF00005307562 1622403843822 41.1 GB
EGAF00005307563 1622403424484 40.5 GB
EGAF00005307564 1622399823619 45.3 GB
EGAF00005307565 1622395323943 41.6 GB
EGAF00005307566 1622395805600 46.6 GB
EGAF00005307567 1622402645387 39.9 GB
EGAF00005307568 1622393643681 41.9 GB
EGAF00005307569 1622409101988 38.7 GB
EGAF00005307570 1622406904736 40.6 GB
EGAF00005307571 1622410384555 39.8 GB
EGAF00005307572 1622412664437 43.5 GB
EGAF00005307573 1622409424512 38.3 GB
EGAF00005307574 1622395030798 42.0 GB
EGAF00005307575 1622393285280 38.7 GB
EGAF00005307576 1622407804189 43.0 GB
EGAF00005307577 1622412664437 40.3 GB
EGAF00005307578 1622406724923 44.0 GB
EGAF00005307579 1622398984471 39.2 GB
EGAF00005307580 1622407324983 41.8 GB
EGAF00005307581 1622405824070 39.3 GB
EGAF00005307582 1622409304181 42.8 GB
EGAF00005307583 1622412599065 40.3 GB
EGAF00005307584 1622399884472 45.2 GB
EGAF00005307585 1622409784474 38.4 GB
EGAF00005307586 1622406243885 43.6 GB
EGAF00005307587 1622407143533 39.1 GB
EGAF00005307588 1622406783813 43.3 GB
EGAF00005307589 1622409101988 38.3 GB
EGAF00005307590 1622411763487 42.3 GB
EGAF00005307591 1622395030798 38.0 GB
EGAF00005307592 1622396105171 40.9 GB
EGAF00005307593 1622395864078 57.0 GB
EGAF00005307594 1622394788639 60.6 GB
EGAF00005307595 1622410443797 35.9 GB
EGAF00005307596 1622403305008 39.7 GB
EGAF00005307597 1622405502670 35.8 GB
EGAF00005307598 1622403904790 39.6 GB
EGAF00005307599 1622393524715 41.0 GB
EGAF00005307600 1622406124483 41.6 GB
EGAF00005307601 1622392024755 38.9 GB
EGAF00005307602 1622409784474 39.4 GB
EGAF00005307603 1622402106140 36.5 GB
EGAF00005307604 1622406844407 39.5 GB
EGAF00005307605 1622391964593 39.0 GB
EGAF00005307606 1622392024755 44.5 GB
EGAF00005307607 1622405644299 39.8 GB
EGAF00005307608 1622404084996 45.5 GB
EGAF00005307609 1622398803768 42.5 GB
EGAF00005307610 1622409101988 48.3 GB
EGAF00005307611 1622402943965 43.5 GB
EGAF00005307612 1622407324983 48.9 GB
EGAF00005307613 1622392204075 28.0 GB
EGAF00005307614 1622404084996 30.8 GB
EGAF00005307615 1622403424484 28.4 GB
EGAF00005307616 1622401929897 31.6 GB
EGAF00005307617 1622400844703 28.0 GB
EGAF00005307618 1622405502670 30.8 GB
EGAF00005307619 1622400304132 27.3 GB
EGAF00005307620 1622404624137 30.0 GB
EGAF00005307621 1622409364156 37.3 GB
EGAF00005307622 1622394788640 41.2 GB
EGAF00005307623 1622400184366 27.2 GB
EGAF00005307624 1622400543617 30.1 GB
EGAF00005307625 1622394788640 37.6 GB
EGAF00005307626 1622393524715 41.1 GB
EGAF00005307627 1622394788640 39.0 GB
EGAF00005307628 1622406963956 42.5 GB
EGAF00005307629 1622397971785 37.9 GB
EGAF00005307630 1622410443797 40.7 GB
EGAF00005307631 1622394788639 37.5 GB
EGAF00005307632 1622411103610 40.2 GB
EGAF00005307633 1622391004721 28.3 GB
EGAF00005307634 1622405502669 31.4 GB
EGAF00005307635 1622392504945 37.6 GB
EGAF00005307636 1622393643681 41.0 GB
EGAF00005307637 1622406424662 49.3 GB
EGAF00005307638 1622395624271 55.3 GB
EGAF00005307639 1622390747041 39.8 GB
EGAF00005307640 1622407863692 44.8 GB
EGAF00005307641 1622405884024 38.7 GB
EGAF00005307642 1622406064758 43.2 GB
EGAF00005307643 1622392024755 38.4 GB
EGAF00005307644 1622411763487 43.3 GB
EGAF00005307645 1622394857530 38.8 GB
EGAF00005307646 1622396524649 43.3 GB
EGAF00005307647 1622396704496 39.5 GB
EGAF00005307648 1622404324671 44.5 GB
EGAF00005307649 1622410384555 35.8 GB
EGAF00005307650 1622402349575 38.8 GB
EGAF00005307651 1622412599065 37.0 GB
EGAF00005307652 1622405502669 40.6 GB
EGAF00005307653 1622407504064 38.7 GB
EGAF00005307654 1622405502669 42.6 GB
EGAF00005307655 1622407863692 38.6 GB
EGAF00005307656 1622398683821 42.8 GB
EGAF00005307657 1622401869227 38.4 GB
EGAF00005307658 1622394788639 43.1 GB
EGAF00005307659 1622409483858 37.8 GB
EGAF00005307660 1622405502669 41.9 GB
EGAF00005307661 1622397971785 38.0 GB
EGAF00005307662 1622407504064 41.2 GB
EGAF00005307663 1622401788653 35.8 GB
EGAF00005307664 1622409101988 38.8 GB
EGAF00005307665 1622407143533 36.8 GB
EGAF00005307666 1622407804189 40.0 GB
EGAF00005307667 1622412599065 39.2 GB
EGAF00005307668 1622391964593 43.2 GB
EGAF00005307669 1622409724026 38.2 GB
EGAF00005307670 1622395504346 41.7 GB
EGAF00005307671 1622410983434 37.9 GB
EGAF00005307672 1622393704992 41.4 GB
EGAF00005307673 1622394788640 36.1 GB
EGAF00005307674 1622405502671 39.1 GB
EGAF00005307675 1622409101989 36.1 GB
EGAF00005307676 1622394788640 39.5 GB
EGAF00005307677 1622405502671 37.1 GB
EGAF00005307678 1622407205202 40.2 GB
EGAF00005307679 1622397364366 35.7 GB
EGAF00005307680 1622402052021 39.8 GB
EGAF00005307681 1622397971785 37.5 GB
EGAF00005307682 1622406424662 41.3 GB
EGAF00005307683 1622404683670 38.1 GB
EGAF00005307684 1622392684724 41.4 GB
174 Files (6.9 TB)