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Bulk-tissue paired-end RNA-sequencing of anterior cingulate cortex samples derived from Lewy body disease patients

Profiling of 24 human anterior cingulate cortex samples by bulk-tissue RNA-sequencing. Samples were derived from 5 non-neurological control individuals and 19 individuals with Lewy body disease (Parkinson’s disease = 7 individuals; Parkinson’s disease with dementia = 6 individuals; dementia with Lewy bodies = 6 individuals). Paired-end FASTQ files for each of the human samples are provided and are denoted by the suffixes R1 (read 1) and R3 (read 2). Fastp (v 0.20.0), a fast all-in-one FASTQ pre-processor, was used for adapter trimming, read filtering and base correction. Fastp default settings were used for quality filtering and base correction. Further details on parameters used are available here: https://github.com/RHReynolds/RNAseqProcessing/blob/master/QC/prealignmentQC_fastp_PEadapters.R.

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Policy describing terms and conditions for accessing data generated by University College London, Department of Genetics and Genomic Medicine.

University College London, Department of Genetics and Genomic Medicine (UCL GGM) DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom UCL GGM grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: UCL GGM and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. 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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005305 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005299223 fastq.gz 10.2 GB
EGAF00005299224 fastq.gz 10.5 GB
EGAF00005299225 fastq.gz 9.1 GB
EGAF00005299226 fastq.gz 9.6 GB
EGAF00005299227 fastq.gz 9.4 GB
EGAF00005299228 fastq.gz 9.8 GB
EGAF00005299229 fastq.gz 8.5 GB
EGAF00005299230 fastq.gz 8.8 GB
EGAF00005299231 fastq.gz 9.9 GB
EGAF00005299232 fastq.gz 10.4 GB
EGAF00005299233 fastq.gz 8.8 GB
EGAF00005299234 fastq.gz 9.1 GB
EGAF00005299235 fastq.gz 8.7 GB
EGAF00005299236 fastq.gz 9.2 GB
EGAF00005299237 fastq.gz 9.6 GB
EGAF00005299238 fastq.gz 9.9 GB
EGAF00005299239 fastq.gz 9.6 GB
EGAF00005299240 fastq.gz 9.9 GB
EGAF00005299241 fastq.gz 9.8 GB
EGAF00005299242 fastq.gz 10.2 GB
EGAF00005299243 fastq.gz 9.8 GB
EGAF00005299244 fastq.gz 10.2 GB
EGAF00005299245 fastq.gz 10.2 GB
EGAF00005299246 fastq.gz 10.6 GB
EGAF00005299247 fastq.gz 8.1 GB
EGAF00005299248 fastq.gz 8.5 GB
EGAF00005299249 fastq.gz 8.2 GB
EGAF00005299250 fastq.gz 8.5 GB
EGAF00005299251 fastq.gz 8.6 GB
EGAF00005299252 fastq.gz 8.9 GB
EGAF00005299253 fastq.gz 9.0 GB
EGAF00005299254 fastq.gz 9.3 GB
EGAF00005299255 fastq.gz 9.9 GB
EGAF00005299256 fastq.gz 10.3 GB
EGAF00005299257 fastq.gz 9.4 GB
EGAF00005299258 fastq.gz 9.8 GB
EGAF00005299259 fastq.gz 9.0 GB
EGAF00005299260 fastq.gz 9.4 GB
EGAF00005299261 fastq.gz 9.7 GB
EGAF00005299262 fastq.gz 10.0 GB
EGAF00005299263 fastq.gz 11.4 GB
EGAF00005299264 fastq.gz 11.7 GB
EGAF00005299265 fastq.gz 8.1 GB
EGAF00005299266 fastq.gz 8.5 GB
EGAF00005299267 fastq.gz 8.9 GB
EGAF00005299268 fastq.gz 9.3 GB
EGAF00005299269 fastq.gz 9.7 GB
EGAF00005299270 fastq.gz 10.2 GB
48 Files (456.3 GB)