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UTUC RNAseq data

RNA sequencing of upper urinary tract urothelial carcinoma

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Integrated genetic analysis of upper urinary tract urothelial carcinoma

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Kyoto University grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Kyoto University and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Kyoto University: Department of Pathology and Tumor Biology, Kyoto University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kyoto University within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kyoto University prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kyoto University as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kyoto University may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005282902 bam 6.1 GB
EGAF00005282905 bam 5.4 GB
EGAF00005284054 bam 4.1 GB
EGAF00005284055 bam 3.5 GB
EGAF00005284056 bam 5.0 GB
EGAF00005284057 bam 4.8 GB
EGAF00005284058 bam 2.7 GB
EGAF00005284059 bam 4.9 GB
EGAF00005284060 bam 7.1 GB
EGAF00005284061 bam 3.6 GB
EGAF00005284062 bam 6.0 GB
EGAF00005284063 bam 4.9 GB
EGAF00005284064 bam 4.6 GB
EGAF00005284065 bam 4.6 GB
EGAF00005284066 bam 8.8 GB
EGAF00005284067 bam 4.8 GB
EGAF00005284068 bam 5.0 GB
EGAF00005284069 bam 7.9 GB
EGAF00005284070 bam 4.0 GB
EGAF00005284071 bam 11.2 GB
EGAF00005284072 bam 4.2 GB
EGAF00005284073 bam 3.4 GB
EGAF00005284074 bam 3.5 GB
EGAF00005284075 bam 4.3 GB
EGAF00005284076 bam 4.3 GB
EGAF00005284077 bam 4.9 GB
EGAF00005284078 bam 4.0 GB
EGAF00005284079 bam 4.4 GB
EGAF00005284080 bam 5.6 GB
EGAF00005284081 bam 5.1 GB
EGAF00005284082 bam 5.4 GB
EGAF00005284083 bam 7.4 GB
EGAF00005284084 bam 4.9 GB
EGAF00005284085 bam 5.3 GB
EGAF00005284086 bam 5.7 GB
EGAF00005284087 bam 5.1 GB
EGAF00005284088 bam 9.1 GB
EGAF00005284089 bam 5.4 GB
EGAF00005284090 bam 5.1 GB
EGAF00005284091 bam 4.8 GB
EGAF00005284092 bam 5.3 GB
EGAF00005284093 bam 4.2 GB
EGAF00005284094 bam 4.8 GB
EGAF00005284095 bam 4.9 GB
EGAF00005284096 bam 5.2 GB
EGAF00005284097 bam 5.1 GB
EGAF00005284098 bam 4.8 GB
EGAF00005284099 bam 7.1 GB
EGAF00005284100 bam 5.5 GB
EGAF00005284101 bam 4.2 GB
EGAF00005284102 bam 5.2 GB
EGAF00005284103 bam 4.9 GB
EGAF00005284104 bam 3.3 GB
EGAF00005284105 bam 7.0 GB
EGAF00005284106 bam 5.0 GB
EGAF00005284107 bam 5.2 GB
EGAF00005284108 bam 4.6 GB
EGAF00005284109 bam 7.1 GB
EGAF00005284110 bam 3.3 GB
EGAF00005284111 bam 4.5 GB
EGAF00005284112 bam 4.4 GB
EGAF00005284113 bam 5.0 GB
EGAF00005284114 bam 5.1 GB
EGAF00005284115 bam 5.1 GB
EGAF00005284116 bam 5.7 GB
EGAF00005284117 bam 7.2 GB
EGAF00005284118 bam 4.2 GB
EGAF00005284119 bam 4.5 GB
EGAF00005284120 bam 4.4 GB
EGAF00005284121 bam 4.9 GB
EGAF00005284122 bam 5.8 GB
EGAF00005284123 bam 3.7 GB
EGAF00005284124 bam 3.3 GB
EGAF00005284126 bam 4.7 GB
EGAF00005284127 bam 5.3 GB
EGAF00005284129 bam 5.5 GB
EGAF00005284130 bam 4.8 GB
EGAF00005284132 bam 4.9 GB
EGAF00005284133 bam 4.8 GB
EGAF00005284134 bam 5.2 GB
EGAF00005284135 bam 4.5 GB
EGAF00005284136 bam 4.5 GB
EGAF00005284137 bam 4.7 GB
EGAF00005284138 bam 4.7 GB
EGAF00005284139 bam 6.7 GB
EGAF00005284140 bam 5.0 GB
EGAF00005284141 bam 5.1 GB
EGAF00005284142 bam 4.8 GB
EGAF00005284143 bam 5.6 GB
EGAF00005284144 bam 4.9 GB
EGAF00005284145 bam 4.6 GB
EGAF00005284147 bam 2.8 GB
EGAF00005284148 bam 5.1 GB
EGAF00005284149 bam 4.9 GB
EGAF00005284150 bam 4.5 GB
EGAF00005284151 bam 4.0 GB
EGAF00005284152 bam 4.5 GB
EGAF00005284153 bam 3.5 GB
EGAF00005284154 bam 4.9 GB
EGAF00005284155 bam 4.5 GB
EGAF00005284156 bam 7.1 GB
EGAF00005284157 bam 4.8 GB
EGAF00005284158 bam 4.9 GB
EGAF00005284159 bam 4.5 GB
EGAF00005284161 bam 4.5 GB
EGAF00005284163 bam 5.0 GB
EGAF00005284164 bam 5.3 GB
EGAF00005284165 bam 6.1 GB
EGAF00005284166 bam 4.9 GB
EGAF00005284167 bam 3.7 GB
EGAF00005284168 bam 3.7 GB
EGAF00005284169 bam 5.2 GB
EGAF00005284170 bam 4.2 GB
EGAF00005284171 bam 3.4 GB
EGAF00005284172 bam 8.9 GB
EGAF00005284173 bam 8.4 GB
EGAF00005284174 bam 4.4 GB
EGAF00005284175 bam 3.9 GB
EGAF00005284176 bam 2.8 GB
EGAF00005284177 bam 7.8 GB
EGAF00005284178 bam 7.6 GB
EGAF00005284179 bam 7.5 GB
EGAF00005284180 bam 7.0 GB
EGAF00005284181 bam 5.8 GB
EGAF00005284182 bam 4.1 GB
EGAF00005284183 bam 4.1 GB
EGAF00005284184 bam 6.6 GB
EGAF00005284185 bam 5.3 GB
EGAF00005284186 bam 4.5 GB
EGAF00005284187 bam 4.7 GB
EGAF00005284188 bam 4.4 GB
EGAF00005284189 bam 3.6 GB
EGAF00005284190 bam 3.8 GB
EGAF00005284191 bam 6.5 GB
EGAF00005284192 bam 9.3 GB
EGAF00005284193 bam 4.9 GB
EGAF00005284194 bam 8.6 GB
EGAF00005284195 bam 7.7 GB
EGAF00005284196 bam 4.8 GB
EGAF00005284197 bam 5.3 GB
EGAF00005284198 bam 4.8 GB
EGAF00005284199 bam 4.5 GB
EGAF00005284200 bam 4.3 GB
EGAF00005284201 bam 6.5 GB
EGAF00005284202 bam 6.4 GB
EGAF00005284203 bam 7.3 GB
EGAF00005284204 bam 7.4 GB
EGAF00005284205 bam 7.5 GB
EGAF00005284206 bam 9.2 GB
EGAF00005284207 bam 4.6 GB
EGAF00005284208 bam 8.5 GB
EGAF00005284209 bam 7.3 GB
EGAF00005284210 bam 7.0 GB
EGAF00005284211 bam 6.7 GB
EGAF00005284212 bam 5.1 GB
EGAF00005284213 bam 9.4 GB
EGAF00005284214 bam 6.1 GB
EGAF00005284215 bam 4.6 GB
EGAF00005284216 bam 9.5 GB
EGAF00005284217 bam 4.8 GB
EGAF00005284218 bam 7.9 GB
EGAF00005284219 bam 11.4 GB
EGAF00005284220 bam 5.2 GB
EGAF00005284221 bam 5.9 GB
EGAF00005284222 bam 6.9 GB
EGAF00005284224 bam 8.8 GB
166 Files (900.8 GB)