Capture-based Methods for Transcriptomic Profiling of FFPE material
This dataset includes all FASTQ files for 11 samples where different capture-based methods for transcriptome profiling have been tested. Specifically, we have the 'traditional' RNA-seq experiment with fresh frozen (FF) material, and 3 different capture methods for the matching formalin-fixed paraffin-embedded samples: Agilent (AGI), IDT, and Twist Biosciences (TBS). In total, there are 43 samples with paired-end FASTQ files (1 sample did not have sufficient material to test all methods). Samples are identified by the R01-R11 IDs with a suffix that indicates the capture method used (or FF for fresh frozen).
- 43 samples
- DAC: EGAC00001002098
- Technologies: Illumina HiSeq 2500, Illumina HiSeq 4000
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005255 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005279593 | fastq.gz | 2.0 GB | ||
| EGAF00005279594 | fastq.gz | 2.0 GB | ||
| EGAF00005279595 | fastq.gz | 2.4 GB | ||
| EGAF00005279596 | fastq.gz | 2.4 GB | ||
| EGAF00005279597 | fastq.gz | 4.0 GB | ||
| EGAF00005279598 | fastq.gz | 4.0 GB | ||
| EGAF00005279599 | fastq.gz | 3.5 GB | ||
| EGAF00005279600 | fastq.gz | 3.5 GB | ||
| EGAF00005279601 | fastq.gz | 2.1 GB | ||
| EGAF00005279602 | fastq.gz | 2.1 GB | ||
| EGAF00005279603 | fastq.gz | 2.8 GB | ||
| EGAF00005279604 | fastq.gz | 2.8 GB | ||
| EGAF00005279605 | fastq.gz | 2.1 GB | ||
| EGAF00005279606 | fastq.gz | 2.2 GB | ||
| EGAF00005279607 | fastq.gz | 1.8 GB | ||
| EGAF00005279608 | fastq.gz | 1.8 GB | ||
| EGAF00005279609 | fastq.gz | 2.2 GB | ||
| EGAF00005279610 | fastq.gz | 2.2 GB | ||
| EGAF00005279611 | fastq.gz | 3.7 GB | ||
| EGAF00005279612 | fastq.gz | 3.8 GB | ||
| EGAF00005279613 | fastq.gz | 1.9 GB | ||
| EGAF00005279614 | fastq.gz | 2.0 GB | ||
| EGAF00005279615 | fastq.gz | 1.6 GB | ||
| EGAF00005279616 | fastq.gz | 1.7 GB | ||
| EGAF00005279617 | fastq.gz | 2.0 GB | ||
| EGAF00005279618 | fastq.gz | 2.2 GB | ||
| EGAF00005279619 | fastq.gz | 2.3 GB | ||
| EGAF00005279620 | fastq.gz | 2.3 GB | ||
| EGAF00005279621 | fastq.gz | 2.4 GB | ||
| EGAF00005279622 | fastq.gz | 2.3 GB | ||
| EGAF00005279623 | fastq.gz | 2.4 GB | ||
| EGAF00005279624 | fastq.gz | 2.5 GB | ||
| EGAF00005279625 | fastq.gz | 3.1 GB | ||
| EGAF00005279626 | fastq.gz | 3.0 GB | ||
| EGAF00005279627 | fastq.gz | 2.5 GB | ||
| EGAF00005279628 | fastq.gz | 2.5 GB | ||
| EGAF00005279629 | fastq.gz | 2.8 GB | ||
| EGAF00005279630 | fastq.gz | 3.0 GB | ||
| EGAF00005279631 | fastq.gz | 2.6 GB | ||
| EGAF00005279632 | fastq.gz | 2.7 GB | ||
| EGAF00005279633 | fastq.gz | 2.4 GB | ||
| EGAF00005279634 | fastq.gz | 2.3 GB | ||
| EGAF00005279635 | fastq.gz | 3.7 GB | ||
| EGAF00005279636 | fastq.gz | 3.8 GB | ||
| EGAF00005279637 | fastq.gz | 2.0 GB | ||
| EGAF00005279638 | fastq.gz | 2.1 GB | ||
| EGAF00005279639 | fastq.gz | 1.7 GB | ||
| EGAF00005279640 | fastq.gz | 1.7 GB | ||
| EGAF00005279641 | fastq.gz | 1.7 GB | ||
| EGAF00005279642 | fastq.gz | 1.6 GB | ||
| EGAF00005279643 | fastq.gz | 2.1 GB | ||
| EGAF00005279644 | fastq.gz | 2.2 GB | ||
| EGAF00005279645 | fastq.gz | 2.7 GB | ||
| EGAF00005279646 | fastq.gz | 2.6 GB | ||
| EGAF00005279647 | fastq.gz | 1.8 GB | ||
| EGAF00005279648 | fastq.gz | 1.8 GB | ||
| EGAF00005279649 | fastq.gz | 679.5 MB | ||
| EGAF00005279650 | fastq.gz | 674.7 MB | ||
| EGAF00005279651 | fastq.gz | 2.6 GB | ||
| EGAF00005279652 | fastq.gz | 2.7 GB | ||
| EGAF00005279653 | fastq.gz | 2.3 GB | ||
| EGAF00005279654 | fastq.gz | 2.3 GB | ||
| EGAF00005279655 | fastq.gz | 3.3 GB | ||
| EGAF00005279656 | fastq.gz | 3.3 GB | ||
| EGAF00005279657 | fastq.gz | 2.2 GB | ||
| EGAF00005279658 | fastq.gz | 2.2 GB | ||
| EGAF00005279659 | fastq.gz | 2.0 GB | ||
| EGAF00005279660 | fastq.gz | 2.0 GB | ||
| EGAF00005279661 | fastq.gz | 2.4 GB | ||
| EGAF00005279662 | fastq.gz | 2.4 GB | ||
| EGAF00005279663 | fastq.gz | 3.3 GB | ||
| EGAF00005279664 | fastq.gz | 3.3 GB | ||
| EGAF00005279665 | fastq.gz | 3.1 GB | ||
| EGAF00005279666 | fastq.gz | 3.1 GB | ||
| EGAF00005279667 | fastq.gz | 1.9 GB | ||
| EGAF00005279668 | fastq.gz | 2.0 GB | ||
| EGAF00005279669 | fastq.gz | 3.4 GB | ||
| EGAF00005279670 | fastq.gz | 3.7 GB | ||
| EGAF00005279671 | fastq.gz | 1.6 GB | ||
| EGAF00005279672 | fastq.gz | 1.6 GB | ||
| EGAF00005279673 | fastq.gz | 1.5 GB | ||
| EGAF00005279674 | fastq.gz | 1.5 GB | ||
| EGAF00005279675 | fastq.gz | 3.1 GB | ||
| EGAF00005279676 | fastq.gz | 3.1 GB | ||
| EGAF00005279677 | fastq.gz | 2.7 GB | ||
| EGAF00005279678 | fastq.gz | 2.9 GB | ||
| 86 Files (210.3 GB) | ||||