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Single circulating tumor cells in hepatocellular carcinoma

We determined intra- and inter-vascular transcriptional heterogeneity within the circulatory system using single-cell RNA-sequencing of 113 CTCs isolated from four key vascular sites along their dissemination route in ten HCC patients. The dataset consists of 146 paired-end fastq files from 113 sigle CTCs, HuH-7 cell line, Hep3B cellline, white blood cell, tumor and normal bulk tissue.

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The Data Access Agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the BGI-Single Cell Clinical application Data Access Commitee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The BGI-Single Cell Clinical application Data Access Commitee and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the BGI-Single Cell Clinical application Data Access Commitee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the BGI-Single Cell Clinical application Data Access Commitee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the BGI-Single Cell Clinical application Data Access Commitee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The BGI-Single Cell Clinical application Data Access Commitee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the BGI-Single Cell Clinical application Data Access Commitee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. Comply with all applicable national, provincial and local laws and regulations, as well as laws and regulations related to human genetic resources management and related policies. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed and bound by the laws and regulations of the People’s Republic of China, and do not implement their conflicting laws. Any disputes related to these terms and conditions should be resolved through friendly consultation between the two parties. Either party has the right to file a lawsuit in a court with jurisdiction in Yantian District, Shenzhen, China.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005278232 1620585725692 2.9 GB
EGAF00005278233 1620585725692 3.2 GB
EGAF00005278234 1620585725692 1.3 GB
EGAF00005278235 1620585725692 1.3 GB
EGAF00005278236 1620585725692 2.0 GB
EGAF00005278237 1620585725692 2.0 GB
EGAF00005278238 1620585725692 2.8 GB
EGAF00005278239 1620585725692 3.0 GB
EGAF00005278240 1620585725692 312.6 MB
EGAF00005278241 1620585725692 371.5 MB
EGAF00005278242 1620585725692 273.7 MB
EGAF00005278243 1620585725692 342.3 MB
EGAF00005278244 1620585725692 920.6 MB
EGAF00005278245 1620585725692 967.6 MB
EGAF00005278246 1620585725692 517.8 MB
EGAF00005278247 1620585725692 584.3 MB
EGAF00005278248 1620585725692 898.1 MB
EGAF00005278249 1620585725692 915.9 MB
EGAF00005278250 1620585725692 1.1 GB
EGAF00005278251 1620585725692 1.1 GB
EGAF00005278252 1620585725692 794.6 MB
EGAF00005278253 1620585725692 813.2 MB
EGAF00005278254 1620585725692 361.4 MB
EGAF00005278255 1620585725692 414.4 MB
EGAF00005278256 1620585725692 3.2 GB
EGAF00005278257 1620585725692 3.5 GB
EGAF00005278258 1620585725692 974.1 MB
EGAF00005278259 1620585725692 992.2 MB
EGAF00005278260 1620585725692 303.6 MB
EGAF00005278261 1620585725692 386.3 MB
EGAF00005278262 1620585725692 929.9 MB
EGAF00005278263 1620585725692 957.1 MB
EGAF00005278264 1620585725692 937.4 MB
EGAF00005278265 1620585725692 986.7 MB
EGAF00005278266 1620585725692 298.3 MB
EGAF00005278267 1620585725692 370.8 MB
EGAF00005278268 1620585725692 269.0 MB
EGAF00005278269 1620585725692 313.6 MB
EGAF00005278270 1620585725692 429.1 MB
EGAF00005278271 1620585725692 483.6 MB
EGAF00005278272 1620585725692 353.4 MB
EGAF00005278273 1620585725692 422.5 MB
EGAF00005278274 1620585725692 2.3 GB
EGAF00005278275 1620585725692 2.4 GB
EGAF00005278276 1620585725692 222.5 MB
EGAF00005278277 1620585725692 248.4 MB
EGAF00005278278 1620585725692 304.2 MB
EGAF00005278279 1620585725692 346.9 MB
EGAF00005278280 1620585725692 316.6 MB
EGAF00005278281 1620585725692 368.7 MB
EGAF00005278282 1620585725692 265.0 MB
EGAF00005278283 1620585725692 324.9 MB
EGAF00005278284 1620585725692 1.0 GB
EGAF00005278285 1620585725692 1.1 GB
EGAF00005278286 1620585725692 301.4 MB
EGAF00005278287 1620585725692 393.9 MB
EGAF00005278288 1620585725692 2.8 GB
EGAF00005278289 1620585725692 3.0 GB
EGAF00005278290 1620585725692 1.0 GB
EGAF00005278291 1620585725692 1.1 GB
EGAF00005278292 1620585725692 377.1 MB
EGAF00005278293 1620585785624 432.8 MB
EGAF00005278294 1620585785624 1.7 GB
EGAF00005278295 1620585785624 1.7 GB
EGAF00005278296 1620585785624 263.9 MB
EGAF00005278297 1620585785624 318.8 MB
EGAF00005278298 1620585785624 250.9 MB
EGAF00005278299 1620585785624 287.0 MB
EGAF00005278300 1620585785624 2.0 GB
EGAF00005278301 1620585785624 2.0 GB
EGAF00005278302 1620585785624 342.3 MB
EGAF00005278303 1620585785624 358.2 MB
EGAF00005278304 1620585785624 1.1 GB
EGAF00005278305 1620585785624 1.1 GB
EGAF00005278306 1620585785624 336.0 MB
EGAF00005278307 1620585785624 402.3 MB
EGAF00005278308 1620585785624 416.4 MB
EGAF00005278309 1620585785624 467.1 MB
EGAF00005278310 1620585785624 2.5 GB
EGAF00005278311 1620585785624 2.5 GB
EGAF00005278312 1620585785624 1.1 GB
EGAF00005278313 1620585785624 1.1 GB
EGAF00005278314 1620585785624 434.6 MB
EGAF00005278315 1620585785624 477.7 MB
EGAF00005278316 1620585785624 257.8 MB
EGAF00005278317 1620585785624 298.7 MB
EGAF00005278318 1620585785624 178.1 MB
EGAF00005278319 1620585785624 176.8 MB
EGAF00005278320 1620585785624 1.7 GB
EGAF00005278321 1620585785624 1.8 GB
EGAF00005278322 1620585785624 1.7 GB
EGAF00005278323 1620585785624 1.7 GB
EGAF00005278324 1620585785624 314.8 MB
EGAF00005278325 1620585785624 390.1 MB
EGAF00005278326 1620585785624 2.1 GB
EGAF00005278327 1620585785624 2.1 GB
EGAF00005278328 1620585785624 2.0 GB
EGAF00005278329 1620585785624 2.0 GB
EGAF00005278330 1620585785624 592.5 MB
EGAF00005278331 1620585785624 654.8 MB
EGAF00005278332 1620585785624 2.7 GB
EGAF00005278333 1620585785624 3.0 GB
EGAF00005278334 1620585785624 2.0 GB
EGAF00005278335 1620585785624 2.1 GB
EGAF00005278336 1620585785624 2.6 GB
EGAF00005278337 1620585785624 2.6 GB
EGAF00005278338 1620585785624 242.2 MB
EGAF00005278339 1620585785624 267.9 MB
EGAF00005278340 1620585785624 767.5 MB
EGAF00005278341 1620585785624 893.9 MB
EGAF00005278342 1620585785624 988.6 MB
EGAF00005278343 1620585785624 996.0 MB
EGAF00005278344 1620585785624 342.7 MB
EGAF00005278345 1620585785624 450.8 MB
EGAF00005278346 1620585785624 399.2 MB
EGAF00005278347 1620585785624 458.7 MB
EGAF00005278348 1620585785624 450.2 MB
EGAF00005278349 1620585785624 496.3 MB
EGAF00005278350 1620585785624 646.1 MB
EGAF00005278351 1620585785624 660.7 MB
EGAF00005278352 1620585785624 256.7 MB
EGAF00005278353 1620585785624 311.8 MB
EGAF00005278354 1620585785624 296.8 MB
EGAF00005278355 1620585785624 324.3 MB
EGAF00005278356 1620585785624 298.6 MB
EGAF00005278357 1620585785624 352.5 MB
EGAF00005278358 1620585785624 812.4 MB
EGAF00005278359 1620585785624 858.8 MB
EGAF00005278360 1620585785624 1.3 GB
EGAF00005278361 1620585785624 1.3 GB
EGAF00005278362 1620585785624 898.9 MB
EGAF00005278363 1620585785624 948.0 MB
EGAF00005278364 1620585785624 1.2 GB
EGAF00005278365 1620585785624 1.3 GB
EGAF00005278366 1620585785624 211.7 MB
EGAF00005278367 1620585785624 227.0 MB
EGAF00005278368 1620585785624 404.1 MB
EGAF00005278369 1620585785624 466.5 MB
EGAF00005278370 1620585785624 331.6 MB
EGAF00005278371 1620585785624 384.7 MB
EGAF00005278372 1620585785624 1.2 GB
EGAF00005278373 1620585785624 1.2 GB
EGAF00005278374 1620585785624 2.0 GB
EGAF00005278375 1620585845196 2.0 GB
EGAF00005278376 1620585845196 371.0 MB
EGAF00005278377 1620585845196 418.7 MB
EGAF00005278378 1620585845196 286.7 MB
EGAF00005278379 1620585845196 345.1 MB
EGAF00005278380 1620585845196 1.7 GB
EGAF00005278381 1620585845196 1.8 GB
EGAF00005278382 1620585845196 268.8 MB
EGAF00005278383 1620585845196 330.1 MB
EGAF00005278384 1620585845196 295.6 MB
EGAF00005278385 1620585845196 342.4 MB
EGAF00005278386 1620585845196 1.4 GB
EGAF00005278387 1620585845196 1.3 GB
EGAF00005278388 1620585845196 370.1 MB
EGAF00005278389 1620585845196 416.4 MB
EGAF00005278390 1620585845196 319.6 MB
EGAF00005278391 1620585845196 351.0 MB
EGAF00005278392 1620585845196 2.9 GB
EGAF00005278393 1620585845196 3.2 GB
EGAF00005278394 1620585845196 1.8 GB
EGAF00005278395 1620585845196 1.8 GB
EGAF00005278396 1620585845196 288.1 MB
EGAF00005278397 1620585845196 358.4 MB
EGAF00005278398 1620585845196 2.7 GB
EGAF00005278399 1620585845196 3.1 GB
EGAF00005278400 1620585845196 3.6 GB
EGAF00005278401 1620585845196 3.8 GB
EGAF00005278402 1620585845196 839.1 MB
EGAF00005278403 1620585845196 893.1 MB
EGAF00005278404 1620585845196 209.3 MB
EGAF00005278405 1620585845196 245.7 MB
EGAF00005278406 1620585845196 1.2 GB
EGAF00005278407 1620585845196 1.2 GB
EGAF00005278408 1620585845196 288.2 MB
EGAF00005278409 1620585845196 352.1 MB
EGAF00005278410 1620585845196 1.3 GB
EGAF00005278411 1620585845196 1.4 GB
EGAF00005278412 1620585845196 2.5 GB
EGAF00005278413 1620585845196 2.9 GB
EGAF00005278414 1620585845196 288.1 MB
EGAF00005278415 1620585845196 349.5 MB
EGAF00005278416 1620585845196 1.0 GB
EGAF00005278417 1620585845196 1.1 GB
EGAF00005278418 1620585845196 316.6 MB
EGAF00005278419 1620585845196 324.6 MB
EGAF00005278420 1620585845196 293.0 MB
EGAF00005278421 1620585845196 355.4 MB
EGAF00005278422 1620585845196 506.8 MB
EGAF00005278423 1620585845196 608.7 MB
EGAF00005278424 1620585845196 1.6 GB
EGAF00005278425 1620585845196 1.6 GB
EGAF00005278426 1620585845196 323.9 MB
EGAF00005278427 1620585845196 376.0 MB
EGAF00005278428 1620585845196 2.6 GB
EGAF00005278429 1620585845196 2.8 GB
EGAF00005278430 1620585845196 2.9 GB
EGAF00005278431 1620585845196 3.1 GB
EGAF00005278432 1620585845196 465.5 MB
EGAF00005278433 1620585845196 490.2 MB
EGAF00005278434 1620585845196 303.2 MB
EGAF00005278435 1620585845196 381.6 MB
EGAF00005278436 1620585845196 985.0 MB
EGAF00005278437 1620585845196 988.6 MB
EGAF00005278438 1620585845196 259.6 MB
EGAF00005278439 1620585845196 316.0 MB
EGAF00005278440 1620585845196 283.2 MB
EGAF00005278441 1620585845196 362.4 MB
EGAF00005278442 1620585845196 307.3 MB
EGAF00005278443 1620585845196 357.1 MB
EGAF00005278444 1620585845196 2.0 GB
EGAF00005278445 1620585845196 2.1 GB
EGAF00005278446 1620585845196 2.9 GB
EGAF00005278447 1620585845196 3.1 GB
EGAF00005278448 1620585845196 1.2 GB
EGAF00005278449 1620585845196 1.3 GB
EGAF00005278450 1620585845196 282.8 MB
EGAF00005278451 1620585845196 341.4 MB
EGAF00005278452 1620585845196 2.5 GB
EGAF00005278453 1620585845196 2.6 GB
EGAF00005278454 1620585845196 845.3 MB
EGAF00005278455 1620585845196 863.7 MB
EGAF00005278456 1620585845196 271.6 MB
EGAF00005278457 1620585905604 332.2 MB
EGAF00005278458 1620585905604 265.7 MB
EGAF00005278459 1620585905604 296.5 MB
EGAF00005278460 1620585905604 285.3 MB
EGAF00005278461 1620585905604 351.5 MB
EGAF00005278462 1620585905604 328.9 MB
EGAF00005278463 1620585905604 400.5 MB
EGAF00005278464 1620585905604 2.0 GB
EGAF00005278465 1620585905604 2.0 GB
EGAF00005278466 1620585905604 287.7 MB
EGAF00005278467 1620585905604 344.7 MB
EGAF00005278468 1620585905604 2.7 GB
EGAF00005278469 1620585905604 3.0 GB
EGAF00005278470 1620585905604 295.1 MB
EGAF00005278471 1620585905604 377.0 MB
EGAF00005278472 1620585905604 292.1 MB
EGAF00005278473 1620585905604 344.4 MB
EGAF00005278474 1620585905604 418.3 MB
EGAF00005278475 1620585905604 423.5 MB
EGAF00005278476 1620585905604 315.8 MB
EGAF00005278477 1620585905604 392.2 MB
EGAF00005278478 1620585905604 692.2 MB
EGAF00005278479 1620585905604 727.2 MB
EGAF00005278480 1620585905604 288.2 MB
EGAF00005278481 1620585905604 357.3 MB
EGAF00005278482 1620585905604 875.0 MB
EGAF00005278483 1620585905604 884.1 MB
EGAF00005278484 1620585905604 268.2 MB
EGAF00005278485 1620585905604 339.8 MB
EGAF00005278486 1620585905604 363.4 MB
EGAF00005278487 1620585905604 390.1 MB
EGAF00005278488 1620585905604 824.2 MB
EGAF00005278489 1620585905604 835.3 MB
EGAF00005278490 1620585905604 3.8 GB
EGAF00005278491 1620585905604 4.1 GB
EGAF00005278492 1620585905604 357.6 MB
EGAF00005278493 1620585905604 353.5 MB
EGAF00005278494 1620585905604 287.5 MB
EGAF00005278495 1620585905604 346.9 MB
EGAF00005278496 1620585905604 278.0 MB
EGAF00005278497 1620585905604 335.5 MB
EGAF00005278498 1620585905604 1.2 GB
EGAF00005278499 1620585905604 1.2 GB
EGAF00005278500 1620585905604 363.5 MB
EGAF00005278501 1620585905604 431.9 MB
EGAF00005278502 1620585905604 241.6 MB
EGAF00005278503 1620585905604 287.4 MB
EGAF00005278504 1620585905604 428.7 MB
EGAF00005278505 1620585905604 472.3 MB
EGAF00005278506 1620585905604 396.2 MB
EGAF00005278507 1620585905604 447.3 MB
EGAF00005278508 1620585905604 281.1 MB
EGAF00005278509 1620585905604 296.4 MB
EGAF00005278510 1620585905604 292.0 MB
EGAF00005278511 1620585905604 353.4 MB
EGAF00005278512 1620585905604 899.3 MB
EGAF00005278513 1620585905604 951.2 MB
EGAF00005278514 1620585905604 890.5 MB
EGAF00005278515 1620585905604 937.8 MB
EGAF00005278516 1620585905604 252.9 MB
EGAF00005278517 1620585905604 306.8 MB
EGAF00005278518 1620585905604 1.1 GB
EGAF00005278519 1620585905604 1.1 GB
EGAF00005278520 1620585905604 1.1 GB
EGAF00005278521 1620585905604 1.1 GB
EGAF00005278522 1620585905604 292.8 MB
EGAF00005278523 1620585905604 340.4 MB
292 Files (286.4 GB)