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IPF Core Biopsy Study RNA-Seq Fastqs

RNA-Seq fastq files for 97 Idiopathic Pulmonary Fibrosis samples.

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Genentech Data Access Agreement

GENENTECH DATA ACCESS COMMITTEE DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User Institution (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech. In signing this Agreement, User Institution agrees on behalf of itself and User to be bound by the terms and conditions of access set out in this Agreement. For the sake of clarity, the terms of access set out in this Agreement shall govern activities conducted by the User and the User Institution (as defined below). User Institution and User are referred to within the Agreement as “You” and “Your” for convenience only. Definitions: gRED means Genentech Research and Early Development. Data means all and any human genetic data generated by gRED and requested by User through submission of an Application for Access to Genotype Data and obtained from Genentech under the terms of this Agreement. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher who has requested Data by submitting an Application for Access to Genotype Data to gRED and whose User Institution has previously completed this Data Access Agreement with respect to such Data and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Genentech Data Access Committee means members of the gRED organization that are responsible for making the data access decisions for the genotype data generated by gRED. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree not to use the data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the Data provided under this Agreement to any other data source on the same samples or to link the Data to any person or otherwise identify any Data Subject from the Data. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the Data for the approved purpose and project described in your Application for Access to Raw Exome Sequencing and/or RNA Sequencing Data; use of the Data for a new purpose or project will require a new application and approval. You agree to restrict your use of the Data to the analysis of somatic mutations and/or gene expression level only; use of these data to infer germline genotype is not permitted. 7. You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED. 8. You accept that Genentech: a. bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b. accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognize that nothing in this Agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on the comparisons with their own data. 11. You agree that You will submit a report to the Genentech Data Access Committee, if requested, on completion of the approved purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 12. (a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws. (b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 13. This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 14 below. Upon termination, You will be required to destroy any Data held. 14. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You. Either party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 12(a), and 14-17. 15. Nothing herein shall create any association, partnership, joint venture, fiduciary duty or the relation of principal and agent between the parties hereto, it being understood that each party is acting as an independent contractor, and neither party shall have the authority to bind the other or the other’s representatives in any way. 16. Except as required by law or permitted under Section 7, neither party shall use or refer to this Agreement in the public media, or use the names or marks of the other party without express prior written permission. 17. This Agreement may be executed by the parties hereto in separate counterparts, each of which when so executed and delivered shall be deemed an original, but all such counterparts shall together constitute one and the same agreement. The parties agree that execution of this Agreement by exchanging facsimile, PDF, or e-Signature (as defined below) signatures shall have the same legal force and effect as the exchange of original signatures. Pursuant to this Agreement, e-Signatures shall mean a signature that consists of one or more letters, characters, numbers or other symbols in digital form incorporated in, attached to or associated with the electronic document, that (a) is unique to the person making the signature; (b) the technology or process used to make the signature is under the sole control of the person making the signature; (c) the technology or process can be used to identify the person using the technology or process; and (d) the electronic signature can be linked with an electronic document in such a way that it can be used to determine whether the electronic document has been changed since the electronic signature was incorporated in, attached to or associated with the electronic document. The written form shall be required to make changes to this clause as well. IN WITNESS WHEREOF, the parties have caused this Agreement to be executed by their respective duly authorized representatives as set forth below. [Signatures on following page]

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004961624 fastq.gz 650.0 MB
EGAF00004961625 fastq.gz 1.2 GB
EGAF00004961626 fastq.gz 1.2 GB
EGAF00004961627 fastq.gz 563.6 MB
EGAF00004961628 fastq.gz 599.0 MB
EGAF00004961629 fastq.gz 1.1 GB
EGAF00004961630 fastq.gz 1.2 GB
EGAF00004961631 fastq.gz 1.0 GB
EGAF00004961632 fastq.gz 998.1 MB
EGAF00004961633 fastq.gz 1.2 GB
EGAF00004961634 fastq.gz 677.1 MB
EGAF00004961635 fastq.gz 1.1 GB
EGAF00004961636 fastq.gz 766.6 MB
EGAF00004961637 fastq.gz 692.6 MB
EGAF00004961638 fastq.gz 1.1 GB
EGAF00004961639 fastq.gz 1.3 GB
EGAF00004961640 fastq.gz 584.5 MB
EGAF00004961641 fastq.gz 1.4 GB
EGAF00004961642 fastq.gz 1.1 GB
EGAF00004961643 fastq.gz 1.4 GB
EGAF00004961644 fastq.gz 1.2 GB
EGAF00004961645 fastq.gz 1.2 GB
EGAF00004961646 fastq.gz 1.1 GB
EGAF00004961647 fastq.gz 1.1 GB
EGAF00004961648 fastq.gz 768.7 MB
EGAF00004961649 fastq.gz 1.1 GB
EGAF00004961650 fastq.gz 856.6 MB
EGAF00004961651 fastq.gz 771.2 MB
EGAF00004961652 fastq.gz 1.1 GB
EGAF00004961653 fastq.gz 645.1 MB
EGAF00004961654 fastq.gz 1.4 GB
EGAF00004961655 fastq.gz 1.5 GB
EGAF00004961656 fastq.gz 764.5 MB
EGAF00004961657 fastq.gz 1.2 GB
EGAF00004961658 fastq.gz 563.9 MB
EGAF00004961659 fastq.gz 1.2 GB
EGAF00004961660 fastq.gz 754.0 MB
EGAF00004961661 fastq.gz 1.4 GB
EGAF00004961662 fastq.gz 679.0 MB
EGAF00004961663 fastq.gz 1.2 GB
EGAF00004961664 fastq.gz 677.8 MB
EGAF00004961665 fastq.gz 1.8 GB
EGAF00004961666 fastq.gz 497.2 MB
EGAF00004961667 fastq.gz 1.1 GB
EGAF00004961668 fastq.gz 1.2 GB
EGAF00004961669 fastq.gz 1.2 GB
EGAF00004961670 fastq.gz 1.1 GB
EGAF00004961671 fastq.gz 1.3 GB
EGAF00004961672 fastq.gz 419.7 MB
EGAF00004961673 fastq.gz 1.5 GB
EGAF00004961674 fastq.gz 834.4 MB
EGAF00004961675 fastq.gz 1.6 GB
EGAF00004961676 fastq.gz 1.3 GB
EGAF00004961677 fastq.gz 796.1 MB
EGAF00004961678 fastq.gz 1.2 GB
EGAF00004961679 fastq.gz 1.3 GB
EGAF00004961680 fastq.gz 581.0 MB
EGAF00004961681 fastq.gz 1.4 GB
EGAF00004961682 fastq.gz 1.2 GB
EGAF00004961683 fastq.gz 378.9 MB
EGAF00004961684 fastq.gz 599.6 MB
EGAF00004961685 fastq.gz 1.6 GB
EGAF00004961686 fastq.gz 1.3 GB
EGAF00004961687 fastq.gz 1.5 GB
EGAF00004961688 fastq.gz 688.1 MB
EGAF00004961689 fastq.gz 791.8 MB
EGAF00004961690 fastq.gz 738.1 MB
EGAF00004961691 fastq.gz 1.2 GB
EGAF00004961692 fastq.gz 1.3 GB
EGAF00004961693 fastq.gz 614.5 MB
EGAF00004961694 fastq.gz 594.8 MB
EGAF00004961695 fastq.gz 1.3 GB
EGAF00004961696 fastq.gz 796.4 MB
EGAF00004961697 fastq.gz 1.2 GB
EGAF00004961698 fastq.gz 518.3 MB
EGAF00004961699 fastq.gz 600.0 MB
EGAF00004961700 fastq.gz 1.2 GB
EGAF00004961701 fastq.gz 1.0 GB
EGAF00004961702 fastq.gz 674.0 MB
EGAF00004961703 fastq.gz 1.7 GB
EGAF00004961704 fastq.gz 543.5 MB
EGAF00004961705 fastq.gz 1.2 GB
EGAF00004961706 fastq.gz 954.0 MB
EGAF00004961707 fastq.gz 899.1 MB
EGAF00004961708 fastq.gz 741.2 MB
EGAF00004961709 fastq.gz 1.1 GB
EGAF00004961710 fastq.gz 705.0 MB
EGAF00004961711 fastq.gz 1.2 GB
EGAF00004961712 fastq.gz 1.5 GB
EGAF00004962485 fastq.gz 898.0 MB
EGAF00004962486 fastq.gz 903.7 MB
EGAF00004962487 fastq.gz 535.8 MB
EGAF00004962488 fastq.gz 920.0 MB
EGAF00004962489 fastq.gz 674.2 MB
EGAF00004962490 fastq.gz 978.3 MB
EGAF00004962491 fastq.gz 1.1 GB
EGAF00004970859 fastq.gz 1.4 GB
97 Files (97.8 GB)