sWGS on cfDNA and matching tumor DNA in pediatric cancer
This dataset contains shallow whole genome sequencing data from paired cfDNA - tumor DNA samples of various pediatric cancer entities (total 215 samples). Files are provided in fastq format. Samples were sequenced on an Ion Proton sequencer (Thermo Fisher Scientific) or a Hiseq3000 (Illumina). Data analysis is available at https://github.com/rmvpaeme/sWGS_pediatric_cancer.
- 215 samples
- DAC: EGAC00001002060
- Technologies: Illumina HiSeq 3000, Ion Torrent Proton
DAC Tech Transfer / Ghent University / Center For Medical Genetics Ghent
Access to the data will be provided after signing a Data Transfer Agreement (DTA) between UGent and the requesting party. For more information, please contact the DAC.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005189201 | 1618223535487 | 5.2 GB | ||
| EGAF00005189202 | 1618220958964 | 3.8 GB | ||
| EGAF00005189203 | 1618222158408 | 4.9 GB | ||
| EGAF00005189204 | 1618221931606 | 3.5 GB | ||
| EGAF00005189205 | 1618221980808 | 5.2 GB | ||
| EGAF00005189206 | 1618221065580 | 6.3 GB | ||
| EGAF00005189207 | 1618220285185 | 5.9 GB | ||
| EGAF00005189208 | 1618219082967 | 885.0 MB | ||
| EGAF00005189209 | 1618220405563 | 1.1 GB | ||
| EGAF00005189210 | 1618219458037 | 519.1 MB | ||
| EGAF00005189211 | 1618219458037 | 1.2 GB | ||
| EGAF00005189212 | 1618220958964 | 677.9 MB | ||
| EGAF00005189213 | 1618220765356 | 523.4 MB | ||
| EGAF00005189214 | 1618220477820 | 1.8 GB | ||
| EGAF00005189215 | 1618219807131 | 4.4 GB | ||
| EGAF00005189216 | 1618219275709 | 576.8 MB | ||
| EGAF00005189217 | 1618220597419 | 563.9 MB | ||
| EGAF00005189218 | 1618219275709 | 1.9 GB | ||
| EGAF00005189219 | 1618219275709 | 3.0 GB | ||
| EGAF00005189220 | 1618219866881 | 2.3 GB | ||
| EGAF00005189221 | 1618219035535 | 752.8 MB | ||
| EGAF00005189222 | 1618221931606 | 1.5 GB | ||
| EGAF00005189223 | 1618220958964 | 1.0 GB | ||
| EGAF00005189224 | 1618220405563 | 1.4 GB | ||
| EGAF00005189225 | 1618220958964 | 1.1 GB | ||
| EGAF00005189226 | 1618220359705 | 983.4 MB | ||
| EGAF00005189227 | 1618219082967 | 811.1 MB | ||
| EGAF00005189228 | 1618220405563 | 887.5 MB | ||
| EGAF00005189229 | 1618219144151 | 669.9 MB | ||
| EGAF00005189230 | 1618220477820 | 767.0 MB | ||
| EGAF00005189231 | 1618220524247 | 1.4 GB | ||
| EGAF00005189232 | 1618220359705 | 576.6 MB | ||
| EGAF00005189233 | 1618220899229 | 944.5 MB | ||
| EGAF00005189234 | 1618219866881 | 634.0 MB | ||
| EGAF00005189235 | 1618221931606 | 2.0 GB | ||
| EGAF00005189236 | 1618220359705 | 2.2 GB | ||
| EGAF00005189237 | 1618219144151 | 733.9 MB | ||
| EGAF00005189238 | 1618219144151 | 751.2 MB | ||
| EGAF00005189239 | 1618221931606 | 2.2 GB | ||
| EGAF00005189240 | 1618220477820 | 2.5 GB | ||
| EGAF00005189241 | 1618219204876 | 2.0 GB | ||
| EGAF00005189242 | 1618219926852 | 570.3 MB | ||
| EGAF00005189243 | 1618219577564 | 655.3 MB | ||
| EGAF00005189244 | 1618219626940 | 560.0 MB | ||
| EGAF00005189245 | 1618220644755 | 812.7 MB | ||
| EGAF00005189246 | 1618220359705 | 1.0 GB | ||
| EGAF00005189247 | 1618219323892 | 683.2 MB | ||
| EGAF00005189248 | 1618221423864 | 1.1 GB | ||
| EGAF00005189249 | 1618219384410 | 1.1 GB | ||
| EGAF00005189250 | 1618220597419 | 1.2 GB | ||
| EGAF00005189251 | 1618221931607 | 1.1 GB | ||
| EGAF00005189252 | 1618219926852 | 4.5 GB | ||
| EGAF00005189253 | 1618222701998 | 2.4 GB | ||
| EGAF00005189254 | 1618222701998 | 3.1 GB | ||
| EGAF00005189255 | 1618221065580 | 3.4 GB | ||
| EGAF00005189256 | 1618219458038 | 662.1 MB | ||
| EGAF00005189257 | 1618219082967 | 651.0 MB | ||
| EGAF00005189258 | 1618218853106 | 657.9 MB | ||
| EGAF00005189259 | 1618219035535 | 740.9 MB | ||
| EGAF00005189260 | 1618220597419 | 882.3 MB | ||
| EGAF00005189261 | 1618219699024 | 767.4 MB | ||
| EGAF00005189262 | 1618219035535 | 644.4 MB | ||
| EGAF00005189263 | 1618219518096 | 774.8 MB | ||
| EGAF00005189264 | 1618219626940 | 723.4 MB | ||
| EGAF00005189265 | 1618220359705 | 1.1 GB | ||
| EGAF00005189266 | 1618219144151 | 1.3 GB | ||
| EGAF00005189267 | 1618220001271 | 635.6 MB | ||
| EGAF00005189268 | 1618222805397 | 3.5 GB | ||
| EGAF00005189269 | 1618218903699 | 1.0 GB | ||
| EGAF00005189270 | 1618222217703 | 4.4 GB | ||
| EGAF00005189271 | 1618221931607 | 4.2 GB | ||
| EGAF00005189272 | 1618223224115 | 4.9 GB | ||
| EGAF00005189273 | 1618220524247 | 5.3 GB | ||
| EGAF00005189274 | 1618220899229 | 771.9 MB | ||
| EGAF00005189275 | 1618218903699 | 812.1 MB | ||
| EGAF00005189276 | 1618218976935 | 524.3 MB | ||
| EGAF00005189277 | 1618222940809 | 4.5 GB | ||
| EGAF00005189278 | 1618219518096 | 492.8 MB | ||
| EGAF00005189279 | 1618220958964 | 1.2 GB | ||
| EGAF00005189280 | 1618220958964 | 780.5 MB | ||
| EGAF00005189281 | 1618220597419 | 690.4 MB | ||
| EGAF00005189282 | 1618220285185 | 771.7 MB | ||
| EGAF00005189283 | 1618219458037 | 554.1 MB | ||
| EGAF00005189284 | 1618220359705 | 771.6 MB | ||
| EGAF00005189285 | 1618220359705 | 1.1 GB | ||
| EGAF00005189286 | 1618220405563 | 2.5 GB | ||
| EGAF00005189287 | 1618220106351 | 787.9 MB | ||
| EGAF00005189288 | 1618219275709 | 1.9 GB | ||
| EGAF00005189289 | 1618225598934 | 4.9 GB | ||
| EGAF00005189290 | 1618221485311 | 4.3 GB | ||
| EGAF00005189291 | 1618218853106 | 343.5 MB | ||
| EGAF00005189292 | 1618221124304 | 2.0 GB | ||
| EGAF00005189293 | 1618220477820 | 1.7 GB | ||
| EGAF00005189294 | 1618219035535 | 758.9 MB | ||
| EGAF00005189295 | 1618221185373 | 639.5 MB | ||
| EGAF00005189296 | 1618219626940 | 851.2 MB | ||
| EGAF00005189297 | 1618218903699 | 764.2 MB | ||
| EGAF00005189298 | 1618220239719 | 1.3 GB | ||
| EGAF00005189299 | 1618220597419 | 702.6 MB | ||
| EGAF00005189300 | 1618219866881 | 732.2 MB | ||
| EGAF00005189301 | 1618221244759 | 1.9 GB | ||
| EGAF00005189302 | 1618220001271 | 677.5 MB | ||
| EGAF00005189303 | 1618221304237 | 1.4 GB | ||
| EGAF00005189304 | 1618219082967 | 755.9 MB | ||
| EGAF00005189305 | 1618220239719 | 659.8 MB | ||
| EGAF00005189306 | 1618219204875 | 1.2 GB | ||
| EGAF00005189307 | 1618220359705 | 526.8 MB | ||
| EGAF00005189308 | 1618219035535 | 567.2 MB | ||
| EGAF00005189309 | 1618219926852 | 573.9 MB | ||
| EGAF00005189310 | 1618219518096 | 480.8 MB | ||
| EGAF00005189311 | 1618220001271 | 445.0 MB | ||
| EGAF00005189312 | 1618219926852 | 621.9 MB | ||
| EGAF00005189313 | 1618219275709 | 526.8 MB | ||
| EGAF00005189314 | 1618220179849 | 616.6 MB | ||
| EGAF00005189315 | 1618220179849 | 559.3 MB | ||
| EGAF00005189316 | 1618220285185 | 528.7 MB | ||
| EGAF00005189317 | 1618219384410 | 831.5 MB | ||
| EGAF00005189318 | 1618220239719 | 952.3 MB | ||
| EGAF00005189319 | 1618220239719 | 757.4 MB | ||
| EGAF00005189320 | 1618221423864 | 1.3 GB | ||
| EGAF00005189321 | 1618220059802 | 653.9 MB | ||
| EGAF00005189322 | 1618220597419 | 720.8 MB | ||
| EGAF00005189323 | 1618219626940 | 830.9 MB | ||
| EGAF00005189324 | 1618220059802 | 820.5 MB | ||
| EGAF00005189325 | 1618220825989 | 945.8 MB | ||
| EGAF00005189326 | 1618221244759 | 1.3 GB | ||
| EGAF00005189327 | 1618220001271 | 716.5 MB | ||
| EGAF00005189328 | 1618220285185 | 821.3 MB | ||
| EGAF00005189329 | 1618219082967 | 1.0 GB | ||
| EGAF00005189330 | 1618220405563 | 1.0 GB | ||
| EGAF00005189331 | 1618219204876 | 817.0 MB | ||
| EGAF00005189332 | 1618218976935 | 444.9 MB | ||
| EGAF00005189333 | 1618223295985 | 4.4 GB | ||
| EGAF00005189334 | 1618220059802 | 1.0 GB | ||
| EGAF00005189335 | 1618219082967 | 1.1 GB | ||
| EGAF00005189336 | 1618219626940 | 1.3 GB | ||
| EGAF00005189337 | 1618220524247 | 2.4 GB | ||
| EGAF00005189338 | 1618221018819 | 1.9 GB | ||
| EGAF00005189339 | 1618219699024 | 608.1 MB | ||
| EGAF00005189340 | 1618221485311 | 689.9 MB | ||
| EGAF00005189341 | 1618220001271 | 2.3 GB | ||
| EGAF00005189342 | 1618219458037 | 677.0 MB | ||
| EGAF00005189343 | 1618219807131 | 677.7 MB | ||
| EGAF00005189344 | 1618220001271 | 361.7 MB | ||
| EGAF00005189345 | 1618219275709 | 358.3 MB | ||
| EGAF00005189346 | 1618219458037 | 1.8 GB | ||
| EGAF00005189347 | 1618219699024 | 1.5 GB | ||
| EGAF00005189348 | 1618219384410 | 3.7 GB | ||
| EGAF00005189349 | 1618219458037 | 2.3 GB | ||
| EGAF00005189350 | 1618220899229 | 1.9 GB | ||
| EGAF00005189351 | 1618220720836 | 2.0 GB | ||
| EGAF00005189352 | 1618220524247 | 1.8 GB | ||
| EGAF00005189353 | 1618220899229 | 833.3 MB | ||
| EGAF00005189354 | 1618219384410 | 647.6 MB | ||
| EGAF00005189355 | 1618221931606 | 1.7 GB | ||
| EGAF00005189356 | 1618220720836 | 1.4 GB | ||
| EGAF00005189357 | 1618219746316 | 764.7 MB | ||
| EGAF00005189358 | 1618218903699 | 774.5 MB | ||
| EGAF00005189359 | 1618218853106 | 1.1 GB | ||
| EGAF00005189360 | 1618219866881 | 772.0 MB | ||
| EGAF00005189361 | 1618219699024 | 816.3 MB | ||
| EGAF00005189362 | 1618219926852 | 651.1 MB | ||
| EGAF00005189363 | 1618219626940 | 561.4 MB | ||
| EGAF00005189364 | 1618220720836 | 2.0 GB | ||
| EGAF00005189365 | 1618222027418 | 2.2 GB | ||
| EGAF00005189366 | 1618219323892 | 624.6 MB | ||
| EGAF00005189367 | 1618219144151 | 764.4 MB | ||
| EGAF00005189368 | 1618220106351 | 551.1 MB | ||
| EGAF00005189369 | 1618222578107 | 2.0 GB | ||
| EGAF00005189370 | 1618220524247 | 493.9 MB | ||
| EGAF00005189371 | 1618219144151 | 460.8 MB | ||
| EGAF00005189372 | 1618219746316 | 374.5 MB | ||
| EGAF00005189373 | 1618220001271 | 697.9 MB | ||
| EGAF00005189374 | 1618220899229 | 869.9 MB | ||
| EGAF00005189375 | 1618222158408 | 2.4 GB | ||
| EGAF00005189376 | 1618219866881 | 1.3 GB | ||
| EGAF00005189377 | 1618220899229 | 2.2 GB | ||
| EGAF00005189378 | 1618221559384 | 1.9 GB | ||
| EGAF00005189379 | 1618219384410 | 840.9 MB | ||
| EGAF00005189380 | 1618219082967 | 804.8 MB | ||
| EGAF00005189381 | 1618221304237 | 1.9 GB | ||
| EGAF00005189382 | 1618219384410 | 683.6 MB | ||
| EGAF00005189383 | 1618219204875 | 1.9 GB | ||
| EGAF00005189384 | 1618219699024 | 755.8 MB | ||
| EGAF00005189385 | 1618219384410 | 1.0 GB | ||
| EGAF00005189386 | 1618219458037 | 3.4 GB | ||
| EGAF00005189387 | 1618219518096 | 3.5 GB | ||
| EGAF00005189388 | 1618220106351 | 2.9 GB | ||
| EGAF00005189389 | 1618219626940 | 3.7 GB | ||
| EGAF00005189390 | 1618220359705 | 832.6 MB | ||
| EGAF00005189391 | 1618220958964 | 999.0 MB | ||
| EGAF00005189392 | 1618220958964 | 1.3 GB | ||
| EGAF00005189393 | 1618221931606 | 3.7 GB | ||
| EGAF00005189394 | 1618219866881 | 3.8 GB | ||
| EGAF00005189395 | 1618219035535 | 2.9 GB | ||
| EGAF00005189396 | 1618219275709 | 1.7 GB | ||
| EGAF00005189397 | 1618219275709 | 1.5 GB | ||
| EGAF00005189398 | 1618219323892 | 697.6 MB | ||
| EGAF00005189399 | 1618221304237 | 2.7 GB | ||
| EGAF00005189400 | 1618222277312 | 2.7 GB | ||
| EGAF00005189401 | 1618221185373 | 4.0 GB | ||
| EGAF00005189402 | 1618219577564 | 679.7 MB | ||
| EGAF00005189403 | 1618218616725 | 750.6 MB | ||
| EGAF00005189404 | 1618219866881 | 692.2 MB | ||
| EGAF00005189405 | 1618219384410 | 835.1 MB | ||
| EGAF00005189406 | 1618220644755 | 6.0 GB | ||
| EGAF00005189407 | 1618219035535 | 2.0 GB | ||
| EGAF00005189408 | 1618219577564 | 1.9 GB | ||
| EGAF00005189409 | 1618220359705 | 428.0 MB | ||
| EGAF00005189410 | 1618218798950 | 571.5 MB | ||
| EGAF00005189411 | 1618219699024 | 2.9 GB | ||
| EGAF00005189412 | 1618218903699 | 605.8 MB | ||
| EGAF00005189413 | 1618218546654 | 488.2 MB | ||
| EGAF00005189414 | 1618220359705 | 1.4 GB | ||
| EGAF00005189415 | 1618219204876 | 890.9 MB | ||
| 215 Files (328.3 GB) | ||||