sWGS on cfDNA and matching tumor DNA in pediatric cancer
This dataset contains shallow whole genome sequencing data from paired cfDNA - tumor DNA samples of various pediatric cancer entities (total 215 samples). Files are provided in fastq format. Samples were sequenced on an Ion Proton sequencer (Thermo Fisher Scientific) or a Hiseq3000 (Illumina). Data analysis is available at https://github.com/rmvpaeme/sWGS_pediatric_cancer.
- 215 samples
- DAC: EGAC00001002060
- Technologies: Illumina HiSeq 3000, Ion Torrent Proton
DAC Tech Transfer / Ghent University / Center For Medical Genetics Ghent
Access to the data will be provided after signing a Data Transfer Agreement (DTA) between UGent and the requesting party. For more information, please contact the DAC.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005198 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005189201 | fastq.gz | 5.2 GB | ||
| EGAF00005189202 | fastq.gz | 3.8 GB | ||
| EGAF00005189203 | fastq.gz | 4.9 GB | ||
| EGAF00005189204 | fastq.gz | 3.5 GB | ||
| EGAF00005189205 | fastq.gz | 5.2 GB | ||
| EGAF00005189206 | fastq.gz | 6.3 GB | ||
| EGAF00005189207 | fastq.gz | 5.9 GB | ||
| EGAF00005189208 | fastq.gz | 885.0 MB | ||
| EGAF00005189209 | fastq.gz | 1.1 GB | ||
| EGAF00005189210 | fastq.gz | 519.1 MB | ||
| EGAF00005189211 | fastq.gz | 1.2 GB | ||
| EGAF00005189212 | fastq.gz | 677.9 MB | ||
| EGAF00005189213 | fastq.gz | 523.4 MB | ||
| EGAF00005189214 | fastq.gz | 1.8 GB | ||
| EGAF00005189215 | fastq.gz | 4.4 GB | ||
| EGAF00005189216 | fastq.gz | 576.8 MB | ||
| EGAF00005189217 | fastq.gz | 563.9 MB | ||
| EGAF00005189218 | fastq.gz | 1.9 GB | ||
| EGAF00005189219 | fastq.gz | 3.0 GB | ||
| EGAF00005189220 | fastq.gz | 2.3 GB | ||
| EGAF00005189221 | fastq.gz | 752.8 MB | ||
| EGAF00005189222 | fastq.gz | 1.5 GB | ||
| EGAF00005189223 | fastq.gz | 1.0 GB | ||
| EGAF00005189224 | fastq.gz | 1.4 GB | ||
| EGAF00005189225 | fastq.gz | 1.1 GB | ||
| EGAF00005189226 | fastq.gz | 983.4 MB | ||
| EGAF00005189227 | fastq.gz | 811.1 MB | ||
| EGAF00005189228 | fastq.gz | 887.5 MB | ||
| EGAF00005189229 | fastq.gz | 669.9 MB | ||
| EGAF00005189230 | fastq.gz | 767.0 MB | ||
| EGAF00005189231 | fastq.gz | 1.4 GB | ||
| EGAF00005189232 | fastq.gz | 576.6 MB | ||
| EGAF00005189233 | fastq.gz | 944.5 MB | ||
| EGAF00005189234 | fastq.gz | 634.0 MB | ||
| EGAF00005189235 | fastq.gz | 2.0 GB | ||
| EGAF00005189236 | fastq.gz | 2.2 GB | ||
| EGAF00005189237 | fastq.gz | 733.9 MB | ||
| EGAF00005189238 | fastq.gz | 751.2 MB | ||
| EGAF00005189239 | fastq.gz | 2.2 GB | ||
| EGAF00005189240 | fastq.gz | 2.5 GB | ||
| EGAF00005189241 | fastq.gz | 2.0 GB | ||
| EGAF00005189242 | fastq.gz | 570.3 MB | ||
| EGAF00005189243 | fastq.gz | 655.3 MB | ||
| EGAF00005189244 | fastq.gz | 560.0 MB | ||
| EGAF00005189245 | fastq.gz | 812.7 MB | ||
| EGAF00005189246 | fastq.gz | 1.0 GB | ||
| EGAF00005189247 | fastq.gz | 683.2 MB | ||
| EGAF00005189248 | fastq.gz | 1.1 GB | ||
| EGAF00005189249 | fastq.gz | 1.1 GB | ||
| EGAF00005189250 | fastq.gz | 1.2 GB | ||
| EGAF00005189251 | fastq.gz | 1.1 GB | ||
| EGAF00005189252 | fastq.gz | 4.5 GB | ||
| EGAF00005189253 | fastq.gz | 2.4 GB | ||
| EGAF00005189254 | fastq.gz | 3.1 GB | ||
| EGAF00005189255 | fastq.gz | 3.4 GB | ||
| EGAF00005189256 | fastq.gz | 662.1 MB | ||
| EGAF00005189257 | fastq.gz | 651.0 MB | ||
| EGAF00005189258 | fastq.gz | 657.9 MB | ||
| EGAF00005189259 | fastq.gz | 740.9 MB | ||
| EGAF00005189260 | fastq.gz | 882.3 MB | ||
| EGAF00005189261 | fastq.gz | 767.4 MB | ||
| EGAF00005189262 | fastq.gz | 644.4 MB | ||
| EGAF00005189263 | fastq.gz | 774.8 MB | ||
| EGAF00005189264 | fastq.gz | 723.4 MB | ||
| EGAF00005189265 | fastq.gz | 1.1 GB | ||
| EGAF00005189266 | fastq.gz | 1.3 GB | ||
| EGAF00005189267 | fastq.gz | 635.6 MB | ||
| EGAF00005189268 | fastq.gz | 3.5 GB | ||
| EGAF00005189269 | fastq.gz | 1.0 GB | ||
| EGAF00005189270 | fastq.gz | 4.4 GB | ||
| EGAF00005189271 | fastq.gz | 4.2 GB | ||
| EGAF00005189272 | fastq.gz | 4.9 GB | ||
| EGAF00005189273 | fastq.gz | 5.3 GB | ||
| EGAF00005189274 | fastq.gz | 771.9 MB | ||
| EGAF00005189275 | fastq.gz | 812.1 MB | ||
| EGAF00005189276 | fastq.gz | 524.3 MB | ||
| EGAF00005189277 | fastq.gz | 4.5 GB | ||
| EGAF00005189278 | fastq.gz | 492.8 MB | ||
| EGAF00005189279 | fastq.gz | 1.2 GB | ||
| EGAF00005189280 | fastq.gz | 780.5 MB | ||
| EGAF00005189281 | fastq.gz | 690.4 MB | ||
| EGAF00005189282 | fastq.gz | 771.7 MB | ||
| EGAF00005189283 | fastq.gz | 554.1 MB | ||
| EGAF00005189284 | fastq.gz | 771.6 MB | ||
| EGAF00005189285 | fastq.gz | 1.1 GB | ||
| EGAF00005189286 | fastq.gz | 2.5 GB | ||
| EGAF00005189287 | fastq.gz | 787.9 MB | ||
| EGAF00005189288 | fastq.gz | 1.9 GB | ||
| EGAF00005189289 | fastq.gz | 4.9 GB | ||
| EGAF00005189290 | fastq.gz | 4.3 GB | ||
| EGAF00005189291 | fastq.gz | 343.5 MB | ||
| EGAF00005189292 | fastq.gz | 2.0 GB | ||
| EGAF00005189293 | fastq.gz | 1.7 GB | ||
| EGAF00005189294 | fastq.gz | 758.9 MB | ||
| EGAF00005189295 | fastq.gz | 639.5 MB | ||
| EGAF00005189296 | fastq.gz | 851.2 MB | ||
| EGAF00005189297 | fastq.gz | 764.2 MB | ||
| EGAF00005189298 | fastq.gz | 1.3 GB | ||
| EGAF00005189299 | fastq.gz | 702.6 MB | ||
| EGAF00005189300 | fastq.gz | 732.2 MB | ||
| EGAF00005189301 | fastq.gz | 1.9 GB | ||
| EGAF00005189302 | fastq.gz | 677.5 MB | ||
| EGAF00005189303 | fastq.gz | 1.4 GB | ||
| EGAF00005189304 | fastq.gz | 755.9 MB | ||
| EGAF00005189305 | fastq.gz | 659.8 MB | ||
| EGAF00005189306 | fastq.gz | 1.2 GB | ||
| EGAF00005189307 | fastq.gz | 526.8 MB | ||
| EGAF00005189308 | fastq.gz | 567.2 MB | ||
| EGAF00005189309 | fastq.gz | 573.9 MB | ||
| EGAF00005189310 | fastq.gz | 480.8 MB | ||
| EGAF00005189311 | fastq.gz | 445.0 MB | ||
| EGAF00005189312 | fastq.gz | 621.9 MB | ||
| EGAF00005189313 | fastq.gz | 526.8 MB | ||
| EGAF00005189314 | fastq.gz | 616.6 MB | ||
| EGAF00005189315 | fastq.gz | 559.3 MB | ||
| EGAF00005189316 | fastq.gz | 528.7 MB | ||
| EGAF00005189317 | fastq.gz | 831.5 MB | ||
| EGAF00005189318 | fastq.gz | 952.3 MB | ||
| EGAF00005189319 | fastq.gz | 757.4 MB | ||
| EGAF00005189320 | fastq.gz | 1.3 GB | ||
| EGAF00005189321 | fastq.gz | 653.9 MB | ||
| EGAF00005189322 | fastq.gz | 720.8 MB | ||
| EGAF00005189323 | fastq.gz | 830.9 MB | ||
| EGAF00005189324 | fastq.gz | 820.5 MB | ||
| EGAF00005189325 | fastq.gz | 945.8 MB | ||
| EGAF00005189326 | fastq.gz | 1.3 GB | ||
| EGAF00005189327 | fastq.gz | 716.5 MB | ||
| EGAF00005189328 | fastq.gz | 821.3 MB | ||
| EGAF00005189329 | fastq.gz | 1.0 GB | ||
| EGAF00005189330 | fastq.gz | 1.0 GB | ||
| EGAF00005189331 | fastq.gz | 817.0 MB | ||
| EGAF00005189332 | fastq.gz | 444.9 MB | ||
| EGAF00005189333 | fastq.gz | 4.4 GB | ||
| EGAF00005189334 | fastq.gz | 1.0 GB | ||
| EGAF00005189335 | fastq.gz | 1.1 GB | ||
| EGAF00005189336 | fastq.gz | 1.3 GB | ||
| EGAF00005189337 | fastq.gz | 2.4 GB | ||
| EGAF00005189338 | fastq.gz | 1.9 GB | ||
| EGAF00005189339 | fastq.gz | 608.1 MB | ||
| EGAF00005189340 | fastq.gz | 689.9 MB | ||
| EGAF00005189341 | fastq.gz | 2.3 GB | ||
| EGAF00005189342 | fastq.gz | 677.0 MB | ||
| EGAF00005189343 | fastq.gz | 677.7 MB | ||
| EGAF00005189344 | fastq.gz | 361.7 MB | ||
| EGAF00005189345 | fastq.gz | 358.3 MB | ||
| EGAF00005189346 | fastq.gz | 1.8 GB | ||
| EGAF00005189347 | fastq.gz | 1.5 GB | ||
| EGAF00005189348 | fastq.gz | 3.7 GB | ||
| EGAF00005189349 | fastq.gz | 2.3 GB | ||
| EGAF00005189350 | fastq.gz | 1.9 GB | ||
| EGAF00005189351 | fastq.gz | 2.0 GB | ||
| EGAF00005189352 | fastq.gz | 1.8 GB | ||
| EGAF00005189353 | fastq.gz | 833.3 MB | ||
| EGAF00005189354 | fastq.gz | 647.6 MB | ||
| EGAF00005189355 | fastq.gz | 1.7 GB | ||
| EGAF00005189356 | fastq.gz | 1.4 GB | ||
| EGAF00005189357 | fastq.gz | 764.7 MB | ||
| EGAF00005189358 | fastq.gz | 774.5 MB | ||
| EGAF00005189359 | fastq.gz | 1.1 GB | ||
| EGAF00005189360 | fastq.gz | 772.0 MB | ||
| EGAF00005189361 | fastq.gz | 816.3 MB | ||
| EGAF00005189362 | fastq.gz | 651.1 MB | ||
| EGAF00005189363 | fastq.gz | 561.4 MB | ||
| EGAF00005189364 | fastq.gz | 2.0 GB | ||
| EGAF00005189365 | fastq.gz | 2.2 GB | ||
| EGAF00005189366 | fastq.gz | 624.6 MB | ||
| EGAF00005189367 | fastq.gz | 764.4 MB | ||
| EGAF00005189368 | fastq.gz | 551.1 MB | ||
| EGAF00005189369 | fastq.gz | 2.0 GB | ||
| EGAF00005189370 | fastq.gz | 493.9 MB | ||
| EGAF00005189371 | fastq.gz | 460.8 MB | ||
| EGAF00005189372 | fastq.gz | 374.5 MB | ||
| EGAF00005189373 | fastq.gz | 697.9 MB | ||
| EGAF00005189374 | fastq.gz | 869.9 MB | ||
| EGAF00005189375 | fastq.gz | 2.4 GB | ||
| EGAF00005189376 | fastq.gz | 1.3 GB | ||
| EGAF00005189377 | fastq.gz | 2.2 GB | ||
| EGAF00005189378 | fastq.gz | 1.9 GB | ||
| EGAF00005189379 | fastq.gz | 840.9 MB | ||
| EGAF00005189380 | fastq.gz | 804.8 MB | ||
| EGAF00005189381 | fastq.gz | 1.9 GB | ||
| EGAF00005189382 | fastq.gz | 683.6 MB | ||
| EGAF00005189383 | fastq.gz | 1.9 GB | ||
| EGAF00005189384 | fastq.gz | 755.8 MB | ||
| EGAF00005189385 | fastq.gz | 1.0 GB | ||
| EGAF00005189386 | fastq.gz | 3.4 GB | ||
| EGAF00005189387 | fastq.gz | 3.5 GB | ||
| EGAF00005189388 | fastq.gz | 2.9 GB | ||
| EGAF00005189389 | fastq.gz | 3.7 GB | ||
| EGAF00005189390 | fastq.gz | 832.6 MB | ||
| EGAF00005189391 | fastq.gz | 999.0 MB | ||
| EGAF00005189392 | fastq.gz | 1.3 GB | ||
| EGAF00005189393 | fastq.gz | 3.7 GB | ||
| EGAF00005189394 | fastq.gz | 3.8 GB | ||
| EGAF00005189395 | fastq.gz | 2.9 GB | ||
| EGAF00005189396 | fastq.gz | 1.7 GB | ||
| EGAF00005189397 | fastq.gz | 1.5 GB | ||
| EGAF00005189398 | fastq.gz | 697.6 MB | ||
| EGAF00005189399 | fastq.gz | 2.7 GB | ||
| EGAF00005189400 | fastq.gz | 2.7 GB | ||
| EGAF00005189401 | fastq.gz | 4.0 GB | ||
| EGAF00005189402 | fastq.gz | 679.7 MB | ||
| EGAF00005189403 | fastq.gz | 750.6 MB | ||
| EGAF00005189404 | fastq.gz | 692.2 MB | ||
| EGAF00005189405 | fastq.gz | 835.1 MB | ||
| EGAF00005189406 | fastq.gz | 6.0 GB | ||
| EGAF00005189407 | fastq.gz | 2.0 GB | ||
| EGAF00005189408 | fastq.gz | 1.9 GB | ||
| EGAF00005189409 | fastq.gz | 428.0 MB | ||
| EGAF00005189410 | fastq.gz | 571.5 MB | ||
| EGAF00005189411 | fastq.gz | 2.9 GB | ||
| EGAF00005189412 | fastq.gz | 605.8 MB | ||
| EGAF00005189413 | fastq.gz | 488.2 MB | ||
| EGAF00005189414 | fastq.gz | 1.4 GB | ||
| EGAF00005189415 | fastq.gz | 890.9 MB | ||
| 215 Files (328.3 GB) | ||||