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RNA-sequencing of meningiomas for integrative molecular classification.

RNA-sequencing of meningiomas for integrative molecular classification.

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MacFeeters-Hamilton Neuro-Oncology Center Data Access Committee

to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom MacFeeters-Hamilton Neuro-Oncology Center (MHNOC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: MHNOC and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. MHNOC: MacFeeters-Hamilton Neuro-Oncology Center, 101 College Street, 14th floor, Room 601, M5G1L7, Toronto, Canada 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify MHNOC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify MHNOC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify MHNOC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. MHNOC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than MHNOC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for MHNOC Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY MHNOC intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. MHNOC anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 12 months after these data were first made available on the relevant hosting database, unless MHNOC has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with MHNOC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005179186 1617950796193 7.0 GB
EGAF00005179187 1617947695681 7.1 GB
EGAF00005179188 1617957405111 8.1 GB
EGAF00005179189 1617962908558 8.3 GB
EGAF00005179190 1617948071355 7.1 GB
EGAF00005179191 1617952274550 7.4 GB
EGAF00005179192 1617961481339 8.4 GB
EGAF00005179193 1617959816824 8.6 GB
EGAF00005179194 1617966806444 9.0 GB
EGAF00005179195 1617967766177 9.2 GB
EGAF00005179196 1617954126283 7.8 GB
EGAF00005179197 1617954126283 7.8 GB
EGAF00005179198 1617958366236 8.5 GB
EGAF00005179199 1617960789588 8.5 GB
EGAF00005179200 1617958272804 7.8 GB
EGAF00005179201 1617961389816 8.3 GB
EGAF00005179202 1617947806828 7.1 GB
EGAF00005179203 1617949348309 7.2 GB
EGAF00005179204 1617947695681 7.1 GB
EGAF00005179205 1617950074660 7.3 GB
EGAF00005179206 1617964460978 9.5 GB
EGAF00005179207 1617967650198 9.7 GB
EGAF00005179208 1617951045556 6.9 GB
EGAF00005179209 1617946721630 6.9 GB
EGAF00005179210 1617955197919 8.0 GB
EGAF00005179211 1617956590948 8.0 GB
EGAF00005179212 1617961216259 8.8 GB
EGAF00005179213 1617962310045 9.0 GB
EGAF00005179214 1617959462162 8.0 GB
EGAF00005179215 1617956217364 8.1 GB
EGAF00005179216 1617951151242 7.5 GB
EGAF00005179217 1617953979298 7.7 GB
EGAF00005179218 1617961274982 8.8 GB
EGAF00005179219 1617964097579 9.1 GB
EGAF00005179220 1617959936793 8.4 GB
EGAF00005179221 1617963859966 8.8 GB
EGAF00005179222 1617973754930 11.0 GB
EGAF00005179223 1617977861190 11.5 GB
EGAF00005179224 1617950074660 7.3 GB
EGAF00005179225 1617950940295 7.4 GB
EGAF00005179226 1617966454753 8.6 GB
EGAF00005179227 1617966454754 8.6 GB
EGAF00005179228 1617956465052 7.5 GB
EGAF00005179229 1617952790370 7.7 GB
EGAF00005179230 1617949851538 7.0 GB
EGAF00005179231 1617951197087 7.2 GB
EGAF00005179232 1617939101628 6.3 GB
EGAF00005179233 1617945193454 6.5 GB
EGAF00005179234 1617943712815 6.8 GB
EGAF00005179235 1617948867399 6.9 GB
EGAF00005179236 1617943022703 6.5 GB
EGAF00005179237 1617944230230 6.8 GB
EGAF00005179238 1617952109439 7.5 GB
EGAF00005179239 1617953615419 7.8 GB
EGAF00005179240 1617952790370 7.7 GB
EGAF00005179241 1617958700492 8.0 GB
EGAF00005179242 1617964097579 9.3 GB
EGAF00005179243 1617963754407 9.3 GB
EGAF00005179244 1617939684749 6.0 GB
EGAF00005179245 1617942899106 6.2 GB
EGAF00005179246 1617953615419 7.8 GB
EGAF00005179247 1617956217364 8.1 GB
EGAF00005179248 1617962908558 8.8 GB
EGAF00005179249 1617967331762 9.1 GB
EGAF00005179250 1617967056521 9.8 GB
EGAF00005179251 1617972937650 10.0 GB
EGAF00005179252 1617959319141 8.5 GB
EGAF00005179253 1617958114235 8.2 GB
EGAF00005179254 1617960285930 8.6 GB
EGAF00005179255 1617962431249 8.8 GB
EGAF00005179256 1617965542692 9.1 GB
EGAF00005179257 1617963262593 9.2 GB
EGAF00005179258 1617964509035 8.8 GB
EGAF00005179259 1617967430680 8.8 GB
EGAF00005179260 1617952109437 7.6 GB
EGAF00005179261 1617956337738 7.9 GB
EGAF00005179262 1617953769586 7.4 GB
EGAF00005179263 1617952109437 7.5 GB
EGAF00005179264 1617969998090 10.4 GB
EGAF00005179265 1617971348043 10.5 GB
EGAF00005179266 1617938372134 6.2 GB
EGAF00005179267 1617940571755 6.4 GB
EGAF00005179268 1617941757285 6.4 GB
EGAF00005179269 1617945316804 6.5 GB
EGAF00005179270 1617964460978 8.8 GB
EGAF00005179271 1617964460978 8.9 GB
EGAF00005179272 1617954709899 7.3 GB
EGAF00005179273 1617953507928 7.6 GB
EGAF00005179274 1617965659267 8.7 GB
EGAF00005179275 1617965542692 8.8 GB
EGAF00005179276 1617957631599 8.1 GB
EGAF00005179277 1617957991859 8.2 GB
EGAF00005179278 1617945704771 6.7 GB
EGAF00005179279 1617950658580 7.0 GB
EGAF00005179280 1617956465052 8.1 GB
EGAF00005179281 1617962054263 8.2 GB
EGAF00005179282 1617949851538 7.0 GB
EGAF00005179283 1617948867399 7.2 GB
EGAF00005179284 1617934741672 5.8 GB
EGAF00005179285 1617938004480 6.0 GB
EGAF00005179286 1617950831928 7.3 GB
EGAF00005179287 1617950595486 7.4 GB
EGAF00005179288 1617949025858 7.1 GB
EGAF00005179289 1617950205863 7.4 GB
EGAF00005179292 1617953875943 7.7 GB
EGAF00005179293 1617953249601 7.7 GB
EGAF00005179294 1617954709899 7.8 GB
EGAF00005179295 1617962908558 8.0 GB
EGAF00005179296 1617960382303 8.7 GB
EGAF00005179297 1617962310045 9.0 GB
EGAF00005179298 1617947212324 7.0 GB
EGAF00005179299 1617952109437 7.1 GB
EGAF00005179300 1617960761312 8.7 GB
EGAF00005179301 1617962908557 8.8 GB
EGAF00005179302 1617956217364 8.1 GB
EGAF00005179303 1617960147192 8.5 GB
EGAF00005179304 1617948867399 7.1 GB
EGAF00005179305 1617950205864 7.4 GB
EGAF00005179306 1617952109437 7.5 GB
EGAF00005179307 1617953401070 7.7 GB
EGAF00005179308 1617956100645 7.5 GB
EGAF00005179309 1617953249601 7.7 GB
EGAF00005179310 1617952109437 7.5 GB
EGAF00005179311 1617953507928 7.8 GB
EGAF00005179312 1617955197919 8.0 GB
EGAF00005179313 1617959816824 8.2 GB
EGAF00005179314 1617954709899 7.8 GB
EGAF00005179315 1617957991859 8.2 GB
EGAF00005179316 1617965067214 9.4 GB
EGAF00005179317 1617969998090 9.7 GB
EGAF00005179318 1617954709899 7.3 GB
EGAF00005179319 1617954335125 7.5 GB
EGAF00005179320 1617956217364 7.9 GB
EGAF00005179321 1617955924252 8.1 GB
EGAF00005179322 1617962908557 8.6 GB
EGAF00005179323 1617965109299 8.6 GB
EGAF00005179324 1617959319141 8.3 GB
EGAF00005179325 1617959319141 8.6 GB
EGAF00005179326 1617957173661 7.6 GB
EGAF00005179327 1617958208852 7.7 GB
EGAF00005179328 1617961937004 7.9 GB
EGAF00005179329 1617961367882 8.1 GB
EGAF00005179330 1617961600559 8.8 GB
EGAF00005179331 1617962431249 9.0 GB
EGAF00005179332 1617960761312 8.9 GB
EGAF00005179333 1617962310045 9.1 GB
EGAF00005179334 1617965067214 9.1 GB
EGAF00005179335 1617965207781 9.1 GB
EGAF00005179336 1617966951037 9.0 GB
EGAF00005179337 1617963984413 9.0 GB
EGAF00005179338 1617960147192 8.1 GB
EGAF00005179339 1617955924252 8.0 GB
EGAF00005179340 1617959936793 8.2 GB
EGAF00005179341 1617966454753 8.5 GB
EGAF00005179342 1617953507928 7.6 GB
EGAF00005179343 1617954335125 7.9 GB
EGAF00005179344 1617949604211 7.3 GB
EGAF00005179345 1617952109437 7.5 GB
EGAF00005179346 1617959319141 8.0 GB
EGAF00005179347 1617956796687 8.0 GB
EGAF00005179348 1617955924252 7.5 GB
EGAF00005179349 1617951377911 7.5 GB
EGAF00005179350 1617954808328 8.0 GB
EGAF00005179351 1617961274982 8.1 GB
EGAF00005179352 1617966454753 9.6 GB
EGAF00005179353 1617971773739 9.8 GB
EGAF00005179354 1617959319141 8.0 GB
EGAF00005179355 1617956914946 8.1 GB
EGAF00005179356 1617957517047 7.7 GB
EGAF00005179357 1617953979298 7.7 GB
EGAF00005179358 1617962054263 8.0 GB
EGAF00005179359 1617957405111 8.3 GB
EGAF00005179360 1617961937004 8.4 GB
EGAF00005179361 1617959816824 8.5 GB
EGAF00005179362 1617960761312 8.8 GB
EGAF00005179363 1617962908558 8.9 GB
EGAF00005179364 1617959319141 8.4 GB
EGAF00005179365 1617963035438 8.6 GB
EGAF00005179366 1617952109437 7.5 GB
EGAF00005179367 1617954808328 7.8 GB
EGAF00005179368 1617953875943 7.8 GB
EGAF00005179369 1617956796687 8.0 GB
EGAF00005179370 1617952109437 7.6 GB
EGAF00005179371 1617955924252 7.9 GB
EGAF00005179372 1617954709900 7.8 GB
EGAF00005179373 1617961506172 8.1 GB
EGAF00005179374 1617956914946 8.2 GB
EGAF00005179375 1617959462162 8.6 GB
EGAF00005179376 1617957405111 8.1 GB
EGAF00005179377 1617962310045 8.4 GB
EGAF00005179378 1617953615419 7.8 GB
EGAF00005179379 1617959319141 7.9 GB
EGAF00005179380 1617957405111 8.1 GB
EGAF00005179381 1617956914946 8.1 GB
EGAF00005179382 1617954197380 7.6 GB
EGAF00005179383 1617954569739 7.8 GB
EGAF00005179384 1617962908558 8.3 GB
EGAF00005179385 1617959319141 8.5 GB
EGAF00005179386 1617963859966 8.4 GB
EGAF00005179387 1617959319141 8.5 GB
EGAF00005179388 1617965207781 9.5 GB
EGAF00005179389 1617966454753 9.8 GB
EGAF00005179390 1617965542692 9.6 GB
EGAF00005179391 1617972427302 9.9 GB
EGAF00005179392 1617962908558 9.1 GB
EGAF00005179393 1617963262593 9.2 GB
EGAF00005179394 1617945193454 6.4 GB
EGAF00005179395 1617946177137 6.6 GB
EGAF00005179396 1617957631599 8.3 GB
EGAF00005179397 1617962188136 8.5 GB
EGAF00005179398 1617953249601 7.7 GB
EGAF00005179399 1617959319141 8.0 GB
EGAF00005179400 1617971773739 9.7 GB
EGAF00005179401 1617966454753 9.8 GB
EGAF00005179402 1617957991859 7.8 GB
EGAF00005179403 1617958366236 7.9 GB
EGAF00005179404 1617970095628 9.3 GB
EGAF00005179405 1617964218442 9.4 GB
EGAF00005179406 1617939128380 6.1 GB
EGAF00005179407 1617940085848 6.4 GB
EGAF00005179408 1617956337738 8.0 GB
EGAF00005179409 1617960620517 8.0 GB
EGAF00005179410 1617955924252 7.9 GB
EGAF00005179411 1617959654526 8.2 GB
EGAF00005179412 1617962054264 9.0 GB
EGAF00005179413 1617965207781 9.1 GB
EGAF00005179414 1617945193454 6.5 GB
EGAF00005179415 1617944069323 6.6 GB
EGAF00005179416 1617954569739 7.3 GB
EGAF00005179417 1617955080427 7.6 GB
EGAF00005179418 1617941628034 6.4 GB
EGAF00005179419 1617942899106 6.7 GB
EGAF00005179420 1617945193454 6.4 GB
EGAF00005179421 1617942189496 6.6 GB
EGAF00005179422 1617941628034 6.5 GB
EGAF00005179423 1617946341117 6.7 GB
EGAF00005179424 1617939840715 6.4 GB
EGAF00005179425 1617943372464 6.5 GB
EGAF00005179426 1617956100645 7.9 GB
EGAF00005179427 1617957040003 8.1 GB
EGAF00005179428 1617961274982 8.9 GB
EGAF00005179429 1617961506172 8.8 GB
EGAF00005179430 1617964460978 9.4 GB
EGAF00005179431 1617970460632 9.5 GB
EGAF00005179432 1617960789588 8.9 GB
EGAF00005179433 1617962431249 8.9 GB
EGAF00005179434 1617963035438 9.1 GB
EGAF00005179435 1617963984413 9.1 GB
248 Files (2.0 TB)